ID DQ185573; SV 1; linear; genomic RNA; STD; VRL; 6806 BP. XX AC DQ185573; XX DT 06-OCT-2005 (Rel. 85, Created) DT 06-OCT-2005 (Rel. 85, Last updated, Version 1) XX DE Citrus sudden death-associated virus strain P15, complete genome. XX KW . XX OS Citrus sudden death-associated virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Marafivirus. XX RN [1] RP 1-6806 RA Barros C.C.P., Jesus W.C.Jr., Teixeira D.C., Santos M.A., Nagata T.; RT "Complete genome sequence of Citrus sudden death-associated virus"; RL Unpublished. XX RN [2] RP 1-6806 RG Fundecitrus RA Barros C.C.P., Jesus W.C.Jr., Teixeira D.C., Santos M.A., Nagata T.; RT ; RL Submitted (29-AUG-2005) to the INSDC. RL Catholic University of Brasilia, SGAN Quadra 916, Modulo B, W5 Norte, RL Brasilia, Distrito Federal 70790160, Brazil XX DR MD5; a4ef00bc62d900b5b714e1be324b1192. DR EuropePMC; PMC5192391; 27999249. DR EuropePMC; PMC5408698; 28441782. XX CC Genome sequence lacks 3' polyA tail. XX FH Key Location/Qualifiers FH FT source 1..6806 FT /organism="Citrus sudden death-associated virus" FT /strain="P15" FT /mol_type="genomic RNA" FT /note="acronym: CSDaV" FT /db_xref="taxon:312008" FT 5'UTR 1..108 FT CDS 109..6678 FT /codon_start=1 FT /product="polyprotein" FT /note="contains motifs similar to other positive strain RNA FT virus methyltransferases, papain-like proteases, helicases, FT polymerases, and coat proteins" FT /db_xref="GOA:Q3HWZ1" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q3HWZ1" FT /protein_id="ABA54133.1" FT /translation="MDRISARIPVAPASAGPTEYVPYPHTNPLLPRGVFTSGPIQPRLH FT FLPHHAQDAPIRCYRPLTYANHLRYDRSASSLKTSPVKLPLTGGTLADAILSLAPTTHR FT DTIATPLMEALAEPYRQSLSTYPWHIPTNLQPFLTSCGITTAGQGFKAHPHPVHKTIET FT NLLSNVWSHYATTPSGVMFMKPSKFEKLRIKQPNFSKLYNYRITAKDSTRYPSTSPDLP FT TEDTCFMHDALMYYSPGQICDLFISRPSLQKLYASLVVPPESDFTTISLFPDLYRYRIE FT KDQLVYELEQNPAHNYIQPRSAIDWLKTTTIRCQDLTLTISRLDSWGPVHSLLIQRGRP FT PIHLEEDSISFRTPKAVLLPEPASLSQGVRDRLVPADVYQALFIYVRAVRTLRVTDPAG FT FVRTQISKPEYSWVTSFRWDNFPPLALATAPHRPHTTYFLFNSTAARVSHWFRTHTLAL FT LSGATAAAASLLMTASWGFRALISSHLVSLSICKRWLRAPPHLLWPEKAPWFQLTLRPK FT VTGPMIDLPILRPFRLFPSTCAKLGAKYPALATLLPAAPRPLWPLKVGLALATVPVCLF FT LWRKFIGPDSPQDMHDSYHAMFHPQPWGLSLARKAICCDRAPFLPIPLVPSSDFKAPPT FT PATPLLTSIPIKGVEPQVPGEGVPPQSASSTGPASDSRCAPQPASSTGPDQPAQDMSAA FT PQAPTKSKVTFAQPLESVTPVVPGAGEPPQSASSTGPASVSRRDPQTASSTVPDAPTLD FT SSVTPPPIIYPVDHLQNDFGPCRCSLCEPPQPAPVPSAPPTVSDHKESQDGEALASALQ FT ALGLAPAPPAPLSQNLTIESSGAMHASCWDQLSSPSSDWDPSPVARDSSATGPPGMYSD FT LFPAPYLPGTGQFIFRSRANGRANIPYPDMDCLLLSIEQATRLPKEALWDTLCATCPDS FT LLDPDTIRRVGLSTDHFVIFAHHYSLRCRFHTAHGVIELGMADATSSFDIDHTAGNPGH FT FSLRQSATPRLNGGIAQDLAVAALRFNIDGTLLPIRSVHVYSTWPKRAKNLSSNMKNGF FT DGIMANIHPTKTNESREKILALDSQLDIAVRRSVRLIHIAGFPGCGKSFPISRLLRTPT FT FRNFKVAVPTVELRAEWKAIIGLPTSEAWRIGTWESSLLKSARVLVIDEIYKMPRGYID FT LAIHSDPTIEMVIALGDPLQGEYHSTHPSSTNSRLLAEPHHLSMYLDYYCMWSHRVPQN FT VAAFFHIKTTSKQPGFCRYQRELPNSRILANSQNAGHTLQQCGYAAVTIASSQGSTYDN FT AACIHLDRNSSLLSPAHSMVALTRSKVGVIFTGDPAQLSNAPSSNRMFSEFFSGRTRPL FT HDWFHNEFPKATVLTEPLKTRGPRLTGAASPYSKVFPSGKDSTPALKPDFQGDVRSSRA FT PIVLGSGELNAPQVSTHFLPETRRPLHWDIPSAIPESATRPDSTEPTTCHPEPVYPGET FT FENLAAHFLPAHDPTDREIYWQGQLSNQFPHMDKEFHLAAQPMSLLAAIHQEKQDPTLL FT PASIQKRLRFRPSDRPYQITPKDEILGQLLFEGLCRAYHRSPFHTEAFDPVLFAECINL FT NEFAQLSSKTQATIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGSWKACQTLALMH FT DAVVLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNWCQQHLTTAVKLANDYTAFD FT QSQHGEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFGPLTCMRLTGEPGTYDDNSD FT YNLAVINCEYMAANTPTMVSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCG FT YYASHVGCVRSPVALFAKLAIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVP FT FQSACFDFFCRRAPRHLKLSLMLGEVPESIIARIGSSLKWASHAIYTTLSSAARVAILR FT SSRNSRSMPDDPDTTLLQGELLQHFQVPFMQSDTLLPLTGGSSAPILTPEAFSTSLAFS FT MASDAQAGPAPSRDDRVDRQPRLPAAPRVAEVGLNAPSVDYPFQWVVASYDGSEAKNLS FT DDLSGSATLTKVMANYRHAELTSVELEVCPLAAAFSKPISVSAVWTIASISPASASETS FT YYGGRLFTVGGPVLMSSTTHLPADLTRLNPVLKGPVKYTDCPRFSYSVYSNGGTKGTNL FT CTIILRGVVRLSGPSGNLLA" XX SQ Sequence 6806 BP; 1314 A; 2533 C; 1370 G; 1589 T; 0 other; gtcccctgtg atcgtctctc ccgcctcatc gccggaaaga tatttttgtt ttaacttttc 60 tttgcacacc tacgccagat ctacgtgcct taggtcatct aagccgctat ggatcgcatc 120 tctgcccgca ttcccgtcgc gcccgcttct gccggcccga ccgagtatgt tccttacccc 180 cacactaacc ccctcctacc ccgaggcgtt ttcacctccg ggcccatcca accccgcctt 240 catttccttc ctcaccatgc ccaagatgcc cccatccgct gctatcgacc cctcacctat 300 gccaaccatc tccgctatga ccgctccgcc tcatcgctca agacttcgcc cgtcaagctc 360 ccgctgaccg gtggtactct tgccgatgcc atcctttccc tagctcccac cactcaccgt 420 gataccattg ccacccccct tatggaagcc cttgctgaac cttaccgcca gtccttgagc 480 acctacccct ggcacattcc aaccaatctt cagcccttcc tcacctcctg tggaatcacc 540 actgctggcc aaggctttaa ggcccaccct caccctgtgc acaagaccat tgagaccaat 600 ctcctctcta atgtctggtc ccactacgcc accaccccca gtggcgtcat gttcatgaaa 660 ccatccaagt tcgagaagct cagaatcaaa cagcctaact tctccaagct ctacaactac 720 cgcatcacag ccaaggactc cacccgttat ccctccactt caccagacct acccactgag 780 gacacctgct ttatgcatga cgccctgatg tactactccc ccggccagat ctgtgacctc 840 ttcatctctc gccccagcct ccaaaagctc tatgcctctc tcgtggttcc ccctgaaagt 900 gacttcacca ccatctccct cttccccgac ttgtatcgct acaggattga gaaggaccag 960 cttgtctatg agctggagca gaacccggcc cacaactaca ttcagccccg ctccgccatt 1020 gactggctga agaccaccac catccgctgc caagacctaa ccctcacaat ctcccgcctt 1080 gactcctggg gcccagttca ctctcttttg atccaaagag gtaggccacc catccacctt 1140 gaagaggact ccatcagctt ccgcactccc aaagctgtcc tccttcctga accagcttct 1200 ttatcccagg gggttcgtga ccgccttgtt cctgctgatg tctaccaggc tctcttcatc 1260 tatgtcagag ccgttcggac cctccgtgtc actgaccccg ctgggtttgt ccgaactcag 1320 atttcaaagc ccgagtactc ctgggtcacc tccttccgct gggacaactt tccccccttg 1380 gcccttgcca ctgctccaca cagaccccac accacttact tcctcttcaa ttccactgcg 1440 gcccgggtat cccactggtt ccgcacccat accttggccc tgctctctgg cgccactgca 1500 gccgccgcca gcctcctcat gaccgccagt tggggcttcc gcgctctcat ttcttctcac 1560 cttgtctccc tctccatctg caagcgctgg ctgagggccc ctccccatct cctttggccc 1620 gagaaggctc catggttcca actcacactg cggcctaaag tcaccggccc catgattgac 1680 ctgcccatcc tccgaccatt cagattgttc ccatccacct gtgctaaatt gggcgccaag 1740 tatcctgccc tcgccacctt gttgccagca gcacccaggc ccctctggcc cctgaaagtt 1800 ggccttgccc ttgccaccgt gcccgtctgt ttattcttgt ggcggaagtt cattggtccc 1860 gactctcccc aggacatgca cgacagctac catgctatgt ttcatccaca gccctgggga 1920 ctctctctgg cccgcaaggc catttgctgt gacagagctc cattcctccc catccctctt 1980 gtgcccagct ctgacttcaa agccccaccc acaccagcta cccctctact gacctccatc 2040 ccaatcaagg gtgtggagcc tcaagttcct ggagaaggag tacctccgca gtcggcttca 2100 tcaaccggcc cggcatcgga ctcccgctgc gccccgcaac cagcttcatc aactggtccg 2160 gatcagcccg cccaggacat gagtgctgcc ccccaagctc ccacaaaatc caaagttact 2220 tttgctcaac cccttgagag cgtgacacct gtagttccag gagcaggaga acctccgcag 2280 tcggcttcat caaccggccc ggcatcggtc tcccgtcgtg acccgcaaac ggcttcatca 2340 accgttccgg atgctcccac cctggacagc agtgtgaccc ctccaccgat tatctaccca 2400 gttgaccatc tccagaatga cttcggcccc tgccgttgtt cactctgcga accgccccag 2460 ccagccccag ttccctctgc ccctcccact gtctctgacc acaaggaatc ccaagatggt 2520 gaggccctcg cttccgccct ccaagctctc gggctcgccc ctgctccacc agctcctctg 2580 tctcagaatc taaccatcga gtcctcagga gccatgcatg cctcttgttg ggatcagctc 2640 tcttccccat catcggactg ggatccctcc cccgtggctc gcgacagctc tgccaccggt 2700 ccaccaggca tgtactctga tctcttcccg gctccttatc tcccaggcac cggccaattc 2760 atcttccgct ccagagccaa cggccgggcc aacattccct accccgacat ggattgtctc 2820 ctactttcca tcgagcaggc tacccgcctt cccaaggagg ccctctggga cactctctgt 2880 gccacctgcc ccgactctct gcttgaccct gacaccatcc gccgagtcgg cctctccaca 2940 gaccattttg ttatcttcgc ccaccactac tccctcaggt gccggttcca taccgcccat 3000 ggtgtcattg agctgggcat ggccgacgcc acttcatctt ttgatatcga ccacactgcc 3060 ggcaatcctg gccacttctc cctccggcag tctgccacgc cccggctcaa tggtggcatt 3120 gctcaggacc ttgctgtggc cgccttaagg ttcaacattg acggcactct cctccccatc 3180 cgctcagttc atgtctattc cacctggccc aagagagcca agaacctgtc ctcaaatatg 3240 aaaaacggct ttgatggaat catggccaac attcatccca ccaagaccaa tgaatccaga 3300 gaaaagattt tggccctgga ctcccagctt gatattgcag tccggagatc tgtccgcctc 3360 atccacattg ccggctttcc aggctgcggc aagtccttcc ccatctcccg cctcctccgc 3420 actcccacct tcaggaactt taaggtggct gtgccaactg tcgagcttcg agctgaatgg 3480 aaagcaatca ttggcctccc aacttctgag gcatggcgca tcggtacctg ggaatcctct 3540 ctgctcaaat ctgcccgggt tctcgtcatt gatgaaatct acaagatgcc ccggggctac 3600 attgatctcg ccatccactc tgatccaacc attgagatgg tcattgctct cggtgaccca 3660 ctccaaggcg agtaccactc cactcatcct tcttccacca actcccgcct tcttgctgaa 3720 ccacaccacc tctccatgta tctcgactac tactgtatgt ggtcccatag agtccctcag 3780 aatgtcgctg ctttcttcca catcaagacc acctccaagc agccaggctt ctgccgctac 3840 cagcgagagc ttcccaactc caggatcctg gccaactctc aaaatgcagg ccatactctt 3900 cagcaatgcg gctatgccgc cgtcaccatt gcctcaagtc agggttccac ttatgacaat 3960 gcggcctgca tccatcttga ccgcaacagc tccctgctct cccctgctca ttccatggtc 4020 gctctcaccc gctccaaggt tggtgtcatc ttcaccgggg atcctgccca gctgtccaat 4080 gccccgagct ccaacagaat gttctctgaa ttcttctcag gccgcacccg ccctcttcat 4140 gactggttcc acaatgagtt cccaaaggcc actgtcctca ccgagcccct caagactcgg 4200 gggccccgcc tcaccggtgc tgcctcacca tactccaagg tgttcccatc cggcaaggat 4260 tccaccccgg ccctcaaacc tgatttccag ggggacgttc gttcttctcg ggcccccatc 4320 gttctgggct ccggcgagct caatgctcca caggtctcaa ctcacttcct tcctgagact 4380 cgccgccctc ttcactggga catcccttct gccatccctg agagtgccac caggcctgat 4440 tccactgagc ccaccacttg ccatcctgag ccggtttacc caggggaaac ctttgaaaat 4500 cttgctgccc actttctccc ggctcacgat cccactgatc gagaaatcta ctggcagggc 4560 cagctgtcca accagttccc tcacatggac aaagagttcc acctggccgc tcagcccatg 4620 agcctcctgg ctgcgattca tcaagagaaa caggacccca ctctgctccc agcttccatc 4680 cagaagaggc tccgcttccg cccatcagac aggccttacc agatcactcc aaaagatgaa 4740 atcctgggcc aattgctctt tgaaggcctc tgccgagcct atcatcggtc ccctttccac 4800 actgaggcct ttgatcctgt tctgttcgcc gagtgcatca atctgaatga attcgcccag 4860 ctctcctcca agactcaggc caccatcatg ggcaatgctc gccgctctga tccagactgg 4920 cggtggagtg ctgtccgcat cttctccaag acccagcaca aagtaaatga agggtccatc 4980 tttggttcct ggaaggcatg tcagactttg gccctcatgc atgatgctgt tgtccttatc 5040 ctgggccccg tcaagaagta ccagagagtg tttgaccaga gagacagacc ccggcacctt 5100 tacatccatg ccggcaacac tccttcacag atgagcaact ggtgccagca gcatctcacc 5160 accgctgtca agctggccaa tgattacacc gcctttgatc aatctcagca tggggaggca 5220 gttgttctcg aaagaaagaa gatggaaagg ctctccattc cacaggccct cattgacctc 5280 cacatccatc tcaagaccca tgtctccacc cagttcggcc ccctcacttg catgcgcctg 5340 actggcgaac ctggcaccta tgatgacaat tctgactata atcttgcggt gatcaactgt 5400 gagtacatgg ctgccaacac tcccactatg gtctcaggcg acgactccct cctggatcgt 5460 gagcctccca ctcgccctga atgggtcatc ctccagcctc ttctcagtct ccgcttcaag 5520 aaagaaaggg gtcggtacgc caccttctgt ggctactacg cctcccatgt cggctgtgtc 5580 cgctcccccg tggctctctt tgccaagctg gccatagctg tcgatgacgg ctccatctct 5640 gacaaaatgg cctcatacct ctctgaattt gctcttggcc actcccttgg agaccatctc 5700 tgggaagctt tgcccctcga ggccgttccc ttccaatctg cctgctttga cttcttctgc 5760 cgccgggccc ccagacacct caagctctct ctcatgctcg gcgaggtccc agaatccatc 5820 attgcccgca tcgggtcatc cttgaagtgg gcctctcatg ccatctacac cacactctcc 5880 tctgccgctc gagtggccat tctgagatcc tcccgcaaca gcagatccat gccagatgac 5940 cccgacacca ctctgctaca aggtgaattg cttcagcact ttcaagtacc attcatgcaa 6000 tctgacactc tcctgcctct cactggtggt tcctctgctc ccatcctcac accagaagcc 6060 ttctccacct ctctcgcttt ctccatggcc agcgatgccc aagcaggtcc ggcccccagt 6120 cgcgatgatc gcgttgaccg ccagcctcgc cttcctgctg ctcctcgcgt tgctgaagtt 6180 ggtctcaatg ccccgtcggt cgactacccg ttccagtggg tcgtcgcctc ctacgacgga 6240 tcagaagcca agaacctaag tgatgatctc tctggctctg ccactctcac caaagtcatg 6300 gccaactacc gacatgctga gctcacatct gttgagctgg aggtctgccc tcttgctgca 6360 gccttctcca agcccatctc tgtgtcggcc gtctggacca ttgcctccat ctccccagct 6420 tccgcctctg aaacctccta ctatggcggt cgcctcttca ctgtcggtgg tccagtcctc 6480 atgtccagta ccactcacct tccagcagat ctcacccgcc tcaatcctgt gctcaagggc 6540 cctgtcaagt acaccgactg ccccagattc tcctactccg tctactccaa cggcggaact 6600 aagggcacca acctctgcac catcatcctc cggggagttg tccgcctcag cggcccctcc 6660 ggtaatctcc tcgcttaggc gagccacttc aggtgaagga aaacacctcc tggtctcagc 6720 caggtaatga tgctaaacct cccccgctca agcagcaatg cctagggttg ccggtcgatc 6780 caaagaccgt ttttctttta tttaat 6806 //