ID DQ178614; SV 1; circular; genomic DNA; STD; VRL; 2577 BP. XX AC DQ178614; XX DT 21-SEP-2005 (Rel. 85, Created) DT 21-SEP-2005 (Rel. 85, Last updated, Version 1) XX DE Cabbage leaf curl Jamaica virus clone pCRFA4 segment DNA-A, complete DE sequence. XX KW . XX OS Cabbage leaf curl Jamaica virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2577 RA Smith K.N., Roye M.E., McLaughlin W.A., Maxwell D.P.; RT "Leaf curl disease of Brassicas in Jamaica: Specifically examining RT interspecific recombination between a crop and weed virus"; RL Unpublished. XX RN [2] RP 1-2577 RA Roye M.E., Smith K.N., Maxwell D.P.; RT ; RL Submitted (24-AUG-2005) to the INSDC. RL Biotechnology Centre, University of the West Indies, Mona, 1 St John's RL Road, Kingston, Jamaica XX DR MD5; 95f50f18388640a7d4603cf6fb586ba6. XX FH Key Location/Qualifiers FH FT source 1..2577 FT /organism="Cabbage leaf curl Jamaica virus" FT /segment="DNA-A" FT /isolate="Douglas Castle" FT /mol_type="genomic DNA" FT /country="Jamaica" FT /clone="pCRFA4" FT /db_xref="taxon:345184" FT gene 162..917 FT /gene="cp" FT CDS 162..917 FT /codon_start=1 FT /gene="cp" FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:Q3LTN9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q3LTN9" FT /protein_id="ABA26616.1" FT /translation="MLKRDAPWRSMAGTSKVSRNANYSLRAGMTHKFDKAAAWVNRPMY FT RKPRIYRMFRSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCLSDITRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFNAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYEIHTENAW FT LLYMACTHASNPGYATLKIRIYFYDSITN" FT gene complement(913..1312) FT /gene="ren" FT CDS complement(914..1312) FT /codon_start=1 FT /gene="ren" FT /product="REn" FT /note="replication enchancer protein" FT /db_xref="GOA:Q3LTN8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q3LTN8" FT /protein_id="ABA26619.1" FT /translation="MDSRTGESITVAQAENSVFIWEVPNPLYFRIRHVEDPLYTRTRIY FT HIEVRFNHNLRKALDLHKAYFNFQVWTTSMRASGPTYLSRFKCLVMSHLDNLGVIGINH FT VIRAVRFATDRPYVTHVHENHQIKFKIY" FT gene complement(1059..1448) FT /gene="trap" FT CDS complement(1059..1448) FT /codon_start=1 FT /gene="trap" FT /product="TrAP" FT /note="transcriptional activator protein" FT /db_xref="GOA:Q3LTN7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q3LTN7" FT /protein_id="ABA26618.1" FT /translation="MQNSSPLKPPSIKAQHKIAKRRAVRRRRIDLNCGCTIFLHINCAD FT NGFTHRGEHHCSSGREFRFYLGGSKSPLFQDTTRRGPVVHQNQDLPHRSPVQPQPTESI FT GSPQSLLQFPSLDDFDESFWADIFK" FT gene complement(1390..2455) FT /gene="rep" FT CDS complement(1390..2445) FT /codon_start=1 FT /gene="rep" FT /product="Rep" FT /note="replication protein" FT /db_xref="GOA:Q3LTN6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q3LTN6" FT /protein_id="ABA26617.1" FT /translation="MPRKGSFSIKAKNYFLTYPRCSLSKEEALSQLQTINTPVNKKFIK FT ICRELHENGEPHIHVLIQFEGKYNCTNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTIEWGVFQIDGRSARGGQQTANDAAAEALNSGTKEEAMKIIKEKLPEKFLFQYH FT NLSSNLDRIFSKAPDPWSPPFPLSSFTNVPDEMQDWADDYFGRSAAARPERPISIIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNSKVFSNNVEYNVIDDIAPHYLKLKHWKELIGAQ FT RDWQSNCKYGRPVQIKGGIPSIVLCNPGEGSSYISFLNKEENASLRAWTIKNAKFITLE FT APLYQSTAQDC" FT gene complement(2031..2294) FT /gene="ac4" FT CDS complement(2031..2294) FT /codon_start=1 FT /gene="ac4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q3LTN5" FT /protein_id="ABA26620.1" FT /translation="MRMGSLISTFSYSSKGNTTARITDSSTWSPHPGQHISIRTYRELN FT PAPTSSPTSTRTEIQLNGECSRSTEEVLEAVSKQLTTQPPRH" XX SQ Sequence 2577 BP; 652 A; 548 C; 619 G; 758 T; 0 other; accggatggc cgcgattttt tggagtcatg cgtgggacca cgcattaaat gaaatctaac 60 caatcacatg ccacctgaga aggttagata ttatggcgta cttagtgcgc tgtgggccta 120 tataaagaaa tggaattttc attttaggct ttaactttga aatgcttaag cgggatgccc 180 cgtggcgttc aatggcgggg acttctaagg tgtcccgcaa tgctaactac tcacttcgtg 240 caggtatgac ccataaattt gataaggccg ctgcttgggt taacaggccc atgtacagga 300 agcccaggat ttataggatg tttagaagcc ccgatgtgcc cagaggctgt gaaggcccat 360 gtaaggtcca atcctatgag cagcgtcatg acatttccca tgttggtaag gtcatgtgcc 420 tttctgacat aacacgtggc aatggtatta cccatcgtgt tgggaagcgt ttctgcgtca 480 agtccgtcta tattttgggc aagatatgga tggacgagaa tatcaagctc aagaaccaca 540 ccaacagtgt catcttttgg ttggttaggg acaggagacc atatggcacc cctatggatt 600 ttggccaagt gttcaacatg ttcgacaacg agcccagtac tgctactgtg aagaacgatc 660 tccgtgatcg ttatcaagtc atgcacaagt ttaacgccaa ggtaaccggt gggcagtatg 720 cgagtaacga gcaggcgttg gtgaagcgtt tctggaaggt caataactac gtggtgtaca 780 accatcaaga agcagggaaa tacgagattc atacggagaa cgcttggtta ttgtatatgg 840 catgtactca tgcctctaat cctgggtatg cgactttgaa aattcggatc tatttttacg 900 attcgataac aaattaataa attttaaatt ttatttgatg attctcgtga acatgagtta 960 cataaggtct gtctgtcgca aaacgaacag ctctaattac atgatttata ccaataaccc 1020 ctaggttatc taaatgagac attacaaggc atttgaatct acttaaatat gtcggcccag 1080 aagctctcat cgaagtcgtc cagacttgga aattgaagta ggctttgtgg agatccaatg 1140 ctttccgtag gttgtggttg aaccggactt cgatgtggta aatcctggtt ctggtgtaca 1200 acgggtcctc tacgtgtcgt atcctgaaat agaggggatt tggaacctcc cagataaaaa 1260 cggaattctc tgcctgagct acagtgatgc tctccccggt gcgtgaatcc attatctgcg 1320 caattgatat ggaggaagat agtacacccg cagttcaaat caatgcgtct tcgtcgtaca 1380 gctctccttt tagcaatctt gtgctgtgct ttgatagagg ggggcttcaa gggtgatgaa 1440 ttttgcattt ttgatagtcc aagctcttag tgatgcattt tcctctttgt tgaggaaact 1500 tatataactg ctcccctctc ctggattgca cagcacgatt gagggtatgc cacctttaat 1560 ttgaactggt ctgccgtact tacagtttga ttgccagtcc ctttgggccc ctatgagctc 1620 tttccagtgc tttagcttta gataatgcgg agctatgtca tcaatgacgt tgtattccac 1680 attatttgaa aagacctttg aattaaagtc gaggtgccca cttaaataat tatgtggtcc 1740 taatgcacgc gcccacatgg tcttgcctgt gcgtgaatca ccttccacta tgatactaat 1800 aggtctttcc ggccgcgcag cggcactccg accaaaatag tcatctgccc aatcttgcat 1860 ctcgtccggg acgttagtaa aggaggagag gggaaacgga ggagaccaag gatccggagc 1920 cttactgaaa atcctatcga ggttactgga taggttgtga tactgaaaga gaaacttttc 1980 cggcagcttc tctttaatga ttttcatggc ctcctctttt gttccagagt ttagtgcctc 2040 ggcggctgcg tcgttagctg tttgctgacc gcctctagca cttcttccgt cgatctggaa 2100 cactccccat tcaattgtat ctccgtcctt gtcgatgtag gacttgacgt cggagctgga 2160 tttagctccc tgtatgttcg gatggaaatg tgctgaccgg gatggggaga ccaagtcgaa 2220 gaatctgtta ttcgtgcagt tgtatttccc ttcgaactgt atgagaacgt ggatatgagg 2280 ctccccattc tcatgaagct ctctgcatat tttgatgaac ttcttgttca ccggagtgtt 2340 tatggtttgt aattgtgaaa gtgcctcttc tttgctaaga gagcatcggg gatacgtaag 2400 gaaatagttt ttggctttaa ttgagaaaga gccctttcgt ggcatatttg taaatatgag 2460 tgttcccccg atagctctct cgctcaaaac tcctatgaat tgggggaact gggggaactt 2520 atatagtaga agttcctaaa gccaaatcaa cacgtggcgg ccatccgtta taatatt 2577 //