ID DQ178613; SV 1; circular; genomic DNA; STD; VRL; 2506 BP. XX AC DQ178613; XX DT 21-SEP-2005 (Rel. 85, Created) DT 29-APR-2006 (Rel. 87, Last updated, Version 2) XX DE Cabbage leal curl virus isolate Jamaica clone pCRFB2 segment DNA-B, DE complete sequence. XX KW . XX OS Cabbage leaf curl Jamaica virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2506 RA Smith K.N., Roye M.E., McLaughlin W.A., Maxwell D.P.; RT "Leaf curl disease of Brassicas in Jamaica: Specifically examining RT interspecific recombination between a crop and weed virus"; RL Unpublished. XX RN [2] RP 1-2506 RA Roye M.E., Smith K.N., Maxwell D.P.; RT ; RL Submitted (24-AUG-2005) to the INSDC. RL Biotechnology Centre, University of the West Indies, Mona, 1 St John's RL Road, Kingston, Jamaica XX DR MD5; afdb534677d5e6c409f76e15775ef019. XX FH Key Location/Qualifiers FH FT source 1..2506 FT /organism="Cabbage leaf curl Jamaica virus" FT /segment="DNA-B" FT /isolate="Douglas Castle" FT /mol_type="genomic DNA" FT /country="Jamaica" FT /clone="pCRFB2" FT /db_xref="taxon:345184" FT gene 374..1144 FT /gene="nsp" FT CDS 374..1144 FT /codon_start=1 FT /gene="nsp" FT /product="NSP" FT /note="nuclear shuttle protein" FT /db_xref="GOA:Q3LTP1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:Q3LTP1" FT /protein_id="ABA26614.1" FT /translation="MYPTKFRRGASYSQRRFVSRNHSSKRGTLVRRTDGKRRRGPSSKA FT HDEPKMKLQRIHENQYGPEFVMTHNSALSTFINFPVLGKLEPNRSRSYIKLNRLSFKGT FT VKIERVHADVNMDGVSSKIEGVFSLVIVVDRKPHLSSAGGLHTFDEIFGARIHSHGNLA FT ITPGLKDRYYILHVFKRVLSVEKDTMMVDLEGSTTISNRRYNCWASFNDLEHDSCNGVY FT ANISKNAILVYYCWMSDAMSKASTFVSYDLDYLG" FT gene complement(1202..2084) FT /gene="mp" FT CDS complement(1202..2083) FT /codon_start=1 FT /gene="mp" FT /product="MP" FT /note="movement protein" FT /db_xref="GOA:Q3LTP0" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:Q3LTP0" FT /protein_id="ABA26615.1" FT /translation="MDSQLANAPNAFNYIESHRDEYQLSHDLTEILLQFPSTAAQFTAR FT LNRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTEDESLQASWTFPLRCNIDLHYF FT SSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDVPFRAPTVKNHS FT KQFSHRDVDFSHVDYGKWERKTLRSKSLSRIGLTGPIELQPGDSWASRSTIGLTNPQTE FT SEVENALHPYREFNQLGTSALDPGDSASQVGLQRAQSTITLSVAQLSEIVRTTVQECIN FT NNCNPSQPKSLQ" XX SQ Sequence 2506 BP; 690 A; 467 C; 552 G; 797 T; 0 other; accggatggc cgcaaatttt tggcgtcctg gtgctgggga ccatctcccg ctcccccttg 60 gcgcactatc tctcatcttt cgacgtgtcg cgtcgaggag cgttcgctaa cgcttatctc 120 tgtgttagac ctttcatttg aattttgaaa taattgggcg tatatttcta tcttgaccgg 180 tctttgtgac gacaaagttt ctgacacatt gtacgatata tggagcgtgg cccaattata 240 ttttctctgc ggagttagat tatcgcttat tgttattcgt cttgcctata taatggacga 300 tagtttaata cttttaatcg tctttgacaa taacattaaa ataacaaatc attttgtaga 360 ggagctggga ataatgtatc ctacaaagtt taggcgtggg gcatcttact ctcaaagacg 420 atttgtttca cgtaatcatt cttctaagcg tggaactttg gttagacgca ctgatgggaa 480 acgtcgtaga ggcccatcaa gcaaagccca tgatgagcct aaaatgaaat tgcaacgcat 540 acatgaaaat caatatgggc ctgaatttgt catgacccat aactcagctc tttcaacttt 600 tattaatttc ccagtacttg ggaagctcga acctaaccga agcaggtcgt atattaagtt 660 gaatcgttta tcatttaagg gaaccgttaa gattgagcgt gtgcacgcgg atgtgaacat 720 ggacggagta agttcgaaga tagaaggtgt gttttctctt gttattgttg tggatcgcaa 780 accacatttg agctctgctg gaggtttgca tacatttgat gaaatatttg gtgcaagaat 840 ccacagccat gggaacttag ctattacacc cggtttgaaa gatcgttatt acatcctcca 900 tgtttttaaa cgcgtattgt ctgtggagaa agacactatg atggtggatc ttgaaggatc 960 gaccacgata tctaataggc gttataactg ttgggcctcg tttaacgatc ttgaacatga 1020 ctcatgtaac ggcgtttatg cgaatataag caaaaacgcc attttagttt actattgttg 1080 gatgtccgat gctatgtcta aggcatcgac atttgtatct tacgatcttg attatttagg 1140 ttaaccatga ataaaatgtc gttgacattg aaaatatgca taaataataa aacaagcaat 1200 tttattgcaa tgactttggt tgcgagggat tacaattatt gttaatacat tcctggaccg 1260 tcgtcctgac tatctcgctt aattgggcca ctgacagcgt tatggtagat tgggcccttt 1320 gtaacccaac ttgtgatgct gaatccccgg ggtctaatgc gctagttcct aactggttga 1380 attctctata tggatgtagc gcattctcca cttctgattc agtttgtggg tttgtaagcc 1440 caatagtgct tcttgaagcc catgaatctc ctggttgtaa ttcaattggg cctgttagtc 1500 caattctgga tagtgatttg gacctcaagg ttttcctctc ccattttccg tagtccacat 1560 gggagaaatc aacatctcta tgtgaaaatt gtttggagtg atttttcact gttggtgccc 1620 ggaatgggac atccactgag tgtttagctg tggataattt caatttgcct ttaaacttgg 1680 caaaatgtgt tcgttgatgc acatttgtgt cgctaaccct gtaatagagt ttccacggaa 1740 tagggtcttt tagcgagaag aatgaagatg aaaaatagtg gagatctatg ttacatctca 1800 agggaaatgt ccaagacgct tgtaaggatt cgtcttcagt cattcttttg tcatggatct 1860 ctacaataac cgacccagtg gcgttaattg gtacttgctg tctatattcg atgacgcaat 1920 ggtcgatttt catacaactc cgattaagcc ttgccgtgaa ctgggctgca gttgaaggga 1980 attgaagtag tatctcagta agatcatgcg atagctggta ttcgtctcta tgagactcta 2040 tgtaattaaa cgcatttgga gcatttgcta actgagaatc catctataga aatctgtccg 2100 cgcagcggca ggggtttcaa taatatctgg gtttaagaat aactgtgttg aagaacacaa 2160 aactgaaacg acctgtttca caattggaaa gagagaatat ctgggcttgt taacaagaac 2220 gaaataacga ttgtcttaag gaaggatgac tatgttaagt tatttagata acttgagtat 2280 aataatctaa gactaagtct gggtttatag agagcgaatt cgaagaagtt aaaatcgctt 2340 cgaattttat gttagtggca tatgcgtaaa tatggtcatg gacaccagga gagctctcct 2400 ccaaaaccta ttgtttctgg tgtcttggtg tcctataaat actaaaagcc tctggggaat 2460 ccataggaca cgtgtacaca tctcagcggc catccgcaat aatatt 2506 //