Dbfetch
ID DQ178612; SV 1; circular; genomic DNA; STD; VRL; 2584 BP. XX AC DQ178612; XX DT 21-SEP-2005 (Rel. 85, Created) DT 29-APR-2006 (Rel. 87, Last updated, Version 2) XX DE Cabbage leal curl virus isolate Jamaica clone pCRFA13 segment DNA-A, DE complete sequence. XX KW . XX OS Cabbage leaf curl Jamaica virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2584 RA Smith K.N., Roye M.E., McLaughlin W.A., Maxwell D.P.; RT "Leaf curl disease of Brassicas in Jamaica: Specifically examining RT interspecific recombination between a crop and weed virus"; RL Unpublished. XX RN [2] RP 1-2584 RA Roye M.E., Smith K.N., Maxwell D.P.; RT ; RL Submitted (24-AUG-2005) to the INSDC. RL Biotechnology Centre, University of the West Indies, Mona, 1 St John's RL Road, Kingston, Jamaica XX DR MD5; b0ae531c617c078a31716b6e320784ce. DR EuropePMC; PMC5904752; 29530481. XX FH Key Location/Qualifiers FH FT source 1..2584 FT /organism="Cabbage leaf curl Jamaica virus" FT /segment="DNA-A" FT /host="cabbage" FT /isolate="Douglas Castle" FT /mol_type="genomic DNA" FT /country="Jamaica" FT /clone="pCRFA13" FT /db_xref="taxon:345184" FT gene 162..917 FT /gene="cp" FT CDS 162..917 FT /codon_start=1 FT /gene="cp" FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:Q3LTP6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q3LTP6" FT /protein_id="ABA26609.1" FT /translation="MPKRDAPWRSMAGTSKVSRNANYSPRAGMTHKFDKAAAWVNRPMY FT RKPRIYRTLRSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDITRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMEFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(914..1312) FT /gene="ren" FT CDS complement(914..1312) FT /codon_start=1 FT /gene="ren" FT /product="REn" FT /note="replication enchancer protein" FT /db_xref="GOA:Q3LTP5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q3LTP5" FT /protein_id="ABA26612.1" FT /translation="MDSRTGESITVAQAENSVFIWEVPNPLYFRIRHVEDPLYTRTRIY FT HIEVRFNHNLRKALDLRKAYFNFQVWTTSMRASGPTYLSRFKCLVMSHLDNLGVIGINH FT VIRAVRFATDRPYVTHVHENHQIKLKIY" FT gene complement(1059..1448) FT /gene="trap" FT CDS complement(1059..1448) FT /codon_start=1 FT /gene="trap" FT /product="TrAP" FT /note="transcriptional activator protein" FT /db_xref="GOA:Q3LTN7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q3LTN7" FT /protein_id="ABA26611.1" FT /translation="MQNSSPLKPPSIKAQHKIAKRRAVRRRRIDLNCGCTIFLHINCAD FT NGFTHRGEHHCSSGREFRFYLGGSKSPLFQDTTRRGPVVHQNQDLPHRSPVQPQPTESI FT GSPQSLLQFPSLDDFDESFWADIFK" FT gene complement(1390..2439) FT /gene="rep" FT CDS complement(1390..2439) FT /codon_start=1 FT /gene="rep" FT /product="Rep" FT /note="replication protein" FT /db_xref="GOA:Q3LTP3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q3LTP3" FT /protein_id="ABA26610.1" FT /translation="MPRNPKSFRLAARNIFLTYPQCDIPKDEALQMLQTLSWSVVKPTY FT IRVAREEHSDGSPHLHCLIQLSGKSNIKDARLFDITHPRRSANFHPNIQAAKDTNAVKN FT YITKDGDYCESGQYKVSGGTKANKDDVYHNAVNAGCVEEALAIIKAGDPKTFIVSYHNV FT RANIERLFTKAPEPWAPPFQLSSFTNVPDEMRSWADDYFGRSAAARPERPISIIVEGDS FT RTGKTMWARALGPHNYLSGHLDFNSKVFSNNVEYNVIDDIAPHYLKLKHWKELIGAQRD FT WQSNCKYGRPVQIKGGIPSIVLCNPGEGSSYISFLNKEENASLRAWTIKNAKFITLEAP FT LYQSTAQDC" FT gene complement(1995..2360) FT /gene="ac4" FT CDS complement(1995..2360) FT /codon_start=1 FT /gene="ac4" FT /product="AC4" FT /db_xref="UniProtKB/TrEMBL:Q3LTP2" FT /protein_id="ABA26613.1" FT /translation="MKLFRCFKPCHGQSSNPHTSESQERSIQTVPPTYTVSSSFQESPT FT SRMLDYLTSLTPEGLPIFTQTFRQPKTPMPSRITSPKMVIIVNPGNTRCLGEQRQIKTT FT STTTPSMRDVWKRLSQL" XX SQ Sequence 2584 BP; 655 A; 543 C; 625 G; 760 T; 1 other; accggatggc cgcgattttt ttggagtcct gcgtgggacc acgcaataaa tgaaatctaa 60 ccaatcacat gccgcctgac aaggctagat attatggctt acttagtgcg ctgtgggcct 120 atataaagac atgagatttc aattttatcc tttacttcga aatgcctaag cgggatgccc 180 cgtggcgttc tatggcgggg acctctaagg tgtcccgcaa tgctaactac tcacctcgtg 240 caggtatgac ccataaattt gataaggccg ctgcttgggt taacaggccc atgtatagga 300 agcccaggat ttataggacg ttaagaagcc ctgatgttcc tagaggctgt gaagggcctt 360 gcaaagtcca gtcttatgag cagcggcatg acatttctca tgttggtaag gtcatgtgca 420 tttcggacat aacacgtggt aatggtatta cccatcgtgt tggcaagcgc ttttgcgtca 480 agtctgtgta cattttgggc aagatatgga tggacgagaa tatcaagctc aagaaccaca 540 ccaatagtgt catgttttgg ttggttaggg accggagacc atatggcacc cctatggagt 600 ttggccaagt gttcaacatg ttcgataacg agcccagtac tgctactgtg aagaacgatc 660 ttcgtgatcg ttatcaggtg atgcacaagt tctatgcaaa ggtaacgggt gggcagtatg 720 cgagtaacga gcaggcgttg gtgaagcgtt tctggaaggt taataactac gtggtgtaca 780 accatcaaga agccgggaaa tacgagaatc atacggagaa cgctttgtta ttgtatatgg 840 catgtactca tgcctctaat cctgtgtatg cgactttgaa aattcggatc tatttttacg 900 attcgataac aaattaataa atttttaatt ttatttgatg attctcgtga acatgagtta 960 cataaggtct gtctgtcgcg aaacgaacag ctctaattac atgatttata ccaataaccc 1020 ctaggttatc taaatgagac attacaaggc atttgaatct acttaaatat gtcggcccag 1080 aagctctcat cgaagtcgtc cagacttgga aattgaagta ggctttgcgg agatccaatg 1140 ctttccgtag gttgtggttg aaccggactt cgatgtggta aatcctggtt ctggtgtaca 1200 acgggtcctc tacgtgtcgt atcctgaaat agaggggatt tggaacctcc cagataaaaa 1260 cggaattctc tgcctgagct acagtgatgc tctccccggt gcgtgaatcc attatctgcg 1320 caattgatat ggaggaagat agtacacccg cagttcaaat caatgcgtct tcgtcgtaca 1380 gctctccttt tagcaatctt gtgctgtgct ttgatagagg ggggcttcaa gggtgatgaa 1440 ttttgcattt ttgatagtcc aagctcttag tgatgcattt tcctctttgt tgaggaaact 1500 tatataactg ctcccctctc ctggattgca cagcacgatt gagggtatgc cacctttaat 1560 ttgaactggt ctgccgtact tacagtttga ttgccagtcc ctttgggccc ctatgagctc 1620 tttccagtgc tttagcttta gataatgcgg agctatgtca tcaatgacgt tgtattccac 1680 attattggaa aagacctttg aattaaagtc gaggtgccca ctcaaataat tatgtggtcc 1740 taaagcacgt gcccacatgg tcttncctgt tcgtgaatca ccttccacta tgatactaat 1800 aggtctttcc ggccgcgcag ctgcactccg accaaaatag tcatctgccc atgatctcat 1860 ctcgtccggg acgttagtaa aggaggagag ttgaaacgga ggagcccaag gttccggagc 1920 cttagtaaag agtcgctcta tgttagctct aacgttatga taactaacaa tgaacgtctt 1980 cggatctcca gcctttataa ttgcgagagc ctcttccaca catcccgcat tgacggcgtt 2040 gtggtagacg tcgtctttat ttgcctttgt tcccccagac accttgtatt gcccggattc 2100 acaataatca ccatctttgg tgatgtaatt cttgacggca ttggtgtctt tggctgcctg 2160 aatgtttggg tgaaaattgg cagaccttct ggggtgagtg atgtcaaata atctagcatc 2220 cttgatgttg gactttcctg aaagctggat gagacagtgt aagtgggggg aaccgtctga 2280 atgctcctct cttgcgactc tgatgtatgt gggtttgacg actgaccatg acagggtttg 2340 aagcatctga agagcttcat ctttgggtat gtcgcactgg ggatatgtta agaatatatt 2400 tctggctgct aaacgaaacg attttgggtt tcgtggcatt tttgtaaata agatttagga 2460 ctccagtgga ggacgccagg agagctctct ctaaaaccta atgtttttgg tgtcttggtg 2520 tccaatatat actaaaagcc tctggggaac accaggggca aaagcggcca tccgcaataa 2580 tatt 2584 //