ID DQ178610; SV 1; circular; genomic DNA; STD; VRL; 2575 BP. XX AC DQ178610; XX DT 21-SEP-2005 (Rel. 85, Created) DT 21-SEP-2005 (Rel. 85, Last updated, Version 1) XX DE Cabbage leaf curl Jamaica virus clone 1910 Cu3-A8 segment DNA-A, complete DE sequence. XX KW . XX OS Cabbage leaf curl Jamaica virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2575 RA Smith K.N., Roye M.E., McLaughlin W.A., Maxwell D.P.; RT "Leaf curl disease of Brassicas in Jamaica: Specifically examining RT interspecific recombination between a crop and weed virus"; RL Unpublished. XX RN [2] RP 1-2575 RA Roye M.E., Smith K.N., Maxwell D.P.; RT ; RL Submitted (24-AUG-2005) to the INSDC. RL Biotechnology Centre, University of the West Indies, Mona, 1 St John's RL Road, Kingston, Jamaica XX DR MD5; 1f7064eff5c79da31fd931d4bd384bdb. XX FH Key Location/Qualifiers FH FT source 1..2575 FT /organism="Cabbage leaf curl Jamaica virus" FT /segment="DNA-A" FT /host="cauliflower" FT /isolate="CUc-3" FT /mol_type="genomic DNA" FT /country="Jamaica" FT /clone="1910 Cu3-A8" FT /db_xref="taxon:345184" FT gene 160..915 FT /gene="cp" FT CDS 160..915 FT /codon_start=1 FT /gene="cp" FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:Q3LTQ3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q3LTQ3" FT /protein_id="ABA26602.1" FT /translation="MPKRDAPWRSMAGTSKVSRNANYSPRAGITHKFDKAAAWVNRPMY FT RKPRIYRMFRSPDVPRGCEGPCKVQSYEQRHDISHVGKVICISDITRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMSWLVRDRRPYGTPMEFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(912..1310) FT /gene="ren" FT CDS complement(912..1310) FT /codon_start=1 FT /gene="ren" FT /product="REn" FT /note="replication enchancer protein" FT /db_xref="GOA:Q3LTQ2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q3LTQ2" FT /protein_id="ABA26605.1" FT /translation="MDSRTGESITVAQAENSVFIWEVPNPLYFKIQRVEDPLYTRTRIY FT HIQVRFNHNLRRALDLHKAYFNFQVWTSSMRASGPTYLSRFKCLVMSHLDNLGVIGINH FT VIRAVRFATDRSYVTHVHENHDIKIKIY" FT gene complement(1057..1446) FT /gene="trap" FT CDS complement(1057..1446) FT /codon_start=1 FT /gene="trap" FT /product="TrAP" FT /note="transcriptional activator protein" FT /db_xref="GOA:Q3LTQ1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q3LTQ1" FT /protein_id="ABA26604.1" FT /translation="MRNSSPLKPPSIKAQHKTAKRRAVRRRRIDLNCGCSIFLHINCAD FT NGFTHRGEHHCSSGREFRFYLGGSKSPVFQDTTRRGPVVHQNQDLPHPSPVQPQPTESI FT GSPQSLLQFPGLDEFDESFWADIFK" FT gene complement(1388..2443) FT /gene="rep" FT CDS complement(1388..2443) FT /codon_start=1 FT /gene="rep" FT /product="Rep" FT /note="replication protein" FT /db_xref="GOA:Q3LTQ0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q3LTQ0" FT /protein_id="ABA26603.1" FT /translation="MPRKGSFSVKAKNYFLTYPRCSLSKEEALSQLQKINTPVNKKFIK FT ICRELHENGEPHIHVLIQFEGKYNCTNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTVEWGVFQIDGRSARGGQQTANDAAAEALNSGTKEEAMKIIKEKLPEKFLFQYH FT NLSSNLDRIFSKAPDPWSPPFPLSSFTNVPDEMQEWADDYFGRSAAARPERPISIIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNSKVFSNNVEYNVIDDIAPQYLKLKHWKELIGAQ FT RDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSGYISFLNKEENASLRAWTIKNAKFITLE FT APLYQSTAQDC" FT gene complement(2029..2292) FT /gene="ac4" FT CDS complement(2029..2292) FT /codon_start=1 FT /gene="ac4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q3LTP9" FT /protein_id="ABA26606.1" FT /translation="MKMGSLISTFSYSSKGSTTARITDSSTWSPHPGQHISIRTYRELN FT PAPTSSPTSTRTEIQLNGECSRSTEEVLEAVSKQLTTQPPRH" XX SQ Sequence 2575 BP; 650 A; 553 C; 622 G; 750 T; 0 other; accggatggc cgcgattttt tggagtcatg cgtgggacca cgcattaaat gaaatctaac 60 caatcacatg ccgcctgaga aggttagata ttatggcgta cttagtgcgc tgtgggccta 120 taaaaagaaa tgaaatttca ttttatgctt tacttcgaaa tgcctaagcg ggatgccccg 180 tggcgttcaa tggcggggac ctctaaggtg tcccgcaatg ctaactactc acctcgtgca 240 ggtataaccc ataaatttga taaggccgct gcctgggtta acaggcccat gtacaggaag 300 cccaggattt ataggatgtt tagaagccct gatgttccca gaggctgtga aggcccatgt 360 aaggtccaat cttatgagca gcgtcatgat atctcacatg ttgggaaggt catctgcatt 420 tcggatataa cacgtggcaa tggtattacc catcgtgttg ggaagcgttt ctgcgtcaag 480 tccgtctaca ttttgggcaa gatatggatg gacgagaata tcaagctcaa gaaccacacc 540 aacagtgtca tgtcttggtt ggttagggac aggagacctt atggcactcc tatggaattt 600 gggcaagtgt tcaacatgtt cgacaacgag cccagtactg ctactgtgaa gaacgatctg 660 cgtgatcgtt ttcaagtcat gcataagttc tacgccaagg taaccggtgg gcagtatgcg 720 agtaacgagc aggcgctggt gaagcggttc tggaaggtca ataactacgt ggtgtataac 780 catcaagaag cagggaaata cgagaatcat acggagaacg ctctgttatt gtatatggca 840 tgtactcatg cctctaatcc tgtgtatgcg acattgaaaa ttcggatcta tttttatgat 900 tcgataacaa attaataaat tttgattttt atatcatgat tttcgtgtac atgagttaca 960 taggatctgt ccgttgcgaa acgaacagct ctaattacat gattgatacc aataacccct 1020 aggttatcta aatgagacat tacaaggcat ttgaatctac ttaaatatgt cggcccagaa 1080 gctctcatcg aactcgtcca gacctggaaa ttgaagtagg ctttgtggag atccaatgct 1140 ctccgtaggt tgtggttgaa ccggacttgg atgtggtaga tcctggttct ggtgtacaac 1200 gggtcctcta cgcgttgtat cttgaaatac aggggatttg gaacctccca gataaaaacg 1260 gaattctctg cctgagctac agtgatgctc tccccggtgc gtgaatccat tatcagcgca 1320 attgatatgg aggaagatag aacacccgca gttcaaatca atgcgtcttc tgcgtacagc 1380 tctcctttta gcagtcttgt gctgtgcttt gatagagggg ggcttcaagg gtgatgaatt 1440 tcgcattttt gatagtccac gctctgagtg atgcgttttc ctctttgttg aggaaactta 1500 tataaccgct cccctctcct ggattgcaca gcacgattga gggtatgcca cctttaattt 1560 gaactggttt gccgtactta cagtttgatt gccagtccct ttgggcccca atgagctctt 1620 tccagtgctt tagctttaga tattgcggag ctatgtcatc aatgacgtta tattccacat 1680 tatttgaaaa gacctttgaa ttaaagtcga ggtgcccact caaataatta tgtggtccta 1740 atgcacgcgc ccacatggtc ttgcctgttc gtgaatcacc ttccactatg atactaatag 1800 gtctttccgg ccgcgcagcg gcactccgac caaaatagtc atctgcccac tcttgcattt 1860 cgtccgggac gttagtaaag gaggagaggg gaaacggagg agaccaagga tccggagcct 1920 tactgaaaat cctatcgagg ttactggata ggttgtgata ctgaaaaaga aacttctccg 1980 ggagcttttc tttaatgatt ttcatggcct cctcctttgt tccagagttt agtgcctcgg 2040 cggctgcgtc gttagctgtt tgctgaccgc ctctagcact tcttccgtcg atctggaaca 2100 ctccccattc aactgtatct ccgtccttgt cgatgtagga cttgacgtcg gagctggatt 2160 tagctccctg tatgttcgga tggaaatgtg ctgaccggga tggggagacc aagtcgaaga 2220 atctgttatt cgtgcagttg tacttccctt cgaactgtat gagaacgtgg atatgaggct 2280 ccccattttc atgaagctct ctgcatattt tgatgaactt cttgttcacc ggagtgttta 2340 ttttttgtaa ttgggaaagt gcctcttctt tgctaagaga gcatcgtgga tacgtaagga 2400 aatagttttt ggctttaact gagaaagagc cctttcgtgg catatttgta aatatgggtg 2460 ttcccccgat agctctctcg ctcaaaactc ctatgaattg ggggaactgg gggaacttat 2520 atagtagaag ttcctaaagg caaatcaaca cgtggcggcc atccgttata atatt 2575 //