ID DQ169056; SV 1; linear; genomic DNA; STD; VRL; 2739 BP. XX AC DQ169056; XX DT 14-SEP-2005 (Rel. 85, Created) DT 14-SEP-2005 (Rel. 85, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus segment DNA A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Tsai W.S.; RT ; RL Submitted (17-AUG-2005) to the INSDC. RL Virology Unit, Asian Vegetable Research and Development Center-The World RL Vegetable Center, PO Box 42, Shanhua, Tainan, Taiwan 741, ROC XX DR MD5; 301b51655e1f2a659e489c9ad33c0737. DR EuropePMC; PMC3125359; 21676270. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="DNA A" FT /host="tomato" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /clone="D1" FT /db_xref="taxon:223347" FT gene 41..427 FT /gene="AV3" FT CDS 41..427 FT /codon_start=1 FT /gene="AV3" FT /product="AV3 protein" FT /db_xref="UniProtKB/TrEMBL:Q3S3V6" FT /protein_id="ABA00497.1" FT /translation="MKCTLHVLFSAWGSINRLAHQVWIHKHVGSIIARISRKRSWSKVH FT ASCKISPRDRKELFTRHSRLRSCPRSHSCSPSEELWRSDQQISSFQRPHRRYADVSTST FT APMELVQLSPLPASQKQRPGPTGR" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:Q3S3V5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q3S3V5" FT /protein_id="ABA00498.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:Q3S3V4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q3S3V4" FT /protein_id="ABA00493.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGTPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(310..795) FT /gene="AC5" FT CDS complement(310..795) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:Q3S3V3" FT /protein_id="ABA00494.1" FT /translation="MHVLHRCCARFIVKHVKNFPEILGSSCRTTVTDQEKHDTVSMVFC FT LDVFIHPYLSQHIDGFHTESLPYAMCESSSSGNITNTHDFANMRDIVPRFKGLHLTRAF FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSIGAVEVETSAYLRCGR" FT gene complement(1047..1457) FT /gene="AC3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q3S3V2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q3S3V2" FT /protein_id="ABA00496.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFNIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT YNVIRAVYHVLDNVLERTIDVWTSYDIKLDIY" FT gene complement(1177..1596) FT /gene="AC2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q3S3V1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q3S3V1" FT /protein_id="ABA00495.1" FT /translation="MQSSSHSKNHSIPVARTSLPQKKKKSIRRRRVDLPCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTVQPQP FT AESPGTSQVFSNFQHLDGLTPSDWDFLESLQNPGP" FT gene complement(1499..2584) FT /gene="AC1" FT CDS complement(1499..2584) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /note="Rep" FT /db_xref="GOA:Q3S3V0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q3S3V0" FT /protein_id="ABA00492.1" FT /translation="MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTRKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKKYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALKVLKELAPKDFVLQFH FT NLNTNLDRIFQPPSEVYVSPFSISSFDRVPADLVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPPEEEEEHSQEAS" FT gene complement(2251..2427) FT /gene="AC4" FT CDS complement(2251..2427) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q3S3U9" FT /protein_id="ABA00499.1" FT /translation="MGLRISMFSSNSKGNSSAKIIDSSTWFPQVGQHISIRTFRELNQR FT RTSKNTSTKTETF" XX SQ Sequence 2739 BP; 747 A; 593 C; 613 G; 786 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg ccctcgacca atgaaatgca cgttacatgt 60 cctatttagt gcgtggggat caataaatag acttgctcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtctaagg tgcatgctag 180 ctgtaaaata tctccaagag atagaaaaga actattcacc agacacagtc ggctacgatc 240 ttgtccgaga tctcattctt gttctccgag cgaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgc atcgaaggta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtccttt gaatctaggc acgatgtctc tcatattggc 540 aaagtcatgt gtgttagtga tgttacccga ggaactggac tcacacatcg cgtagggaag 600 cgattctgtg tgaaatccgt ctatgtgctg ggaaagatat ggatggatga aaacatcaag 660 acaaaaaacc atactaacag tgtcatgttt ttcttggtcc gtgaccgtcg tcctacagga 720 actccccagg atttcgggga agtttttaac atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgca agtggcatgc gactgtgacg 840 ggaggaacat atgcatcgaa ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgtagttt acaatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctactttt atgattcggt cacaaattaa taaatatcca gttttatatc atatgaagtc 1080 catacatcaa ttgttcgctc taatacatta tccaatacat gataaaccgc tcttattaca 1140 ttataaattc ctatgacacc taacatatcc aggtacttaa ggacctgggt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga tgttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaact gtatttgaat cttgattatg 1320 tcgtgctgtg ttaggaaggg cctgctgtcg tgtttcaaaa ttttgaaata caggggattt 1380 cgaatttccc aggtatatac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatataatag gaacaaccac acggcagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctggggg agcgatgttc tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctgcattttt ctcttcgtcc agatattcct tatagctgct gtttggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgactggctt tccgtacttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaaatgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtaccag gcttcattgc tatacacttt tgggctcaga tcaagatgtc 1860 cacacaagta attgtggggt cctaagcaac gagcccacat tgttttgcca gttctactat 1920 ccccctctat gactatgctt atgggcctaa aaggccgcgc agcggcacac acaacattgg 1980 acgagaccca atcgacgagg tctgccggaa ctctgtcgaa ggatgaaatt gaaaatggag 2040 aaacataaac ctcggaagga ggttgaaaaa tgcgatctaa atttgtattt aaattgtgaa 2100 actgcagaac gaaatccttt ggggctaatt cctttaatac tttcaacgca tcgtctttat 2160 ttcccgtgtt aatcgcctgg gcatatgcat cgttcgccgt ttgttgacct ccacgggcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaacgtc tccgtctttg tcgatgtatt 2280 ttttgacgtc cgacgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggaaac caagtcgaag aatctattat ttttgcactg gaatttccct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatctt cgtgaagctc tctacagatc ttgatgaatt 2460 tcttcctcgt cggggtttct agggtttgca attgggaaag tgcctcttct ttagttagag 2520 agcactttgg atatgtgagg aaatagtttt tggcatttac tctaaaacga cgtggcgaag 2580 ccataaaact tgtcgttttg attcggcgtc cctcaactta tctatgtaat tggtgtctgg 2640 agtcctatat ataggtaaga caccatatgg cattattgta attttgaaaa gaaaattact 2700 ttaattcaaa ttccctaaag cggccattcg tataatatt 2739 //