ID DQ157465; SV 1; linear; genomic RNA; STD; VRL; 4975 BP. XX AC DQ157465; XX DT 07-JUN-2006 (Rel. 88, Created) DT 13-AUG-2006 (Rel. 88, Last updated, Version 2) XX DE Citrus leprosis virus C segment RNA2, complete sequence. XX KW . XX OS Citrus leprosis virus C OC Viruses; Riboviria; Kitaviridae; Cilevirus. XX RN [1] RP 1-4975 RA Pascon R.C., Silva A.C.R.; RT "Isolated nucleic acids molecules from the genome of Citrus Leprosis Virus RT and uses thereof"; RL Unpublished. XX RN [2] RP 1-4975 RX DOI; 10.1007/s11262-005-6913-1. RX PUBMED; 16732481. RA Pascon R.C., Kitajima J.P., Breton M.C., Assumpcao L., Greggio C., RA Zanca A.S., Okura V.K., Alegria M.C., Camargo M.E., Silva G.G., RA Cardozo J.C., Vallim M.A., Franco S.F., Silva V.H., Junior H.J., RA Oliveira F., Giachetto P.F., Ferrari F., Aguilar-Vildoso C.I., RA Franchiscini F.J., Silva J.M., Arruda P., Ferro J.A., Reinach F., RA da Silva A.C.; RT "The complete nucleotide sequence and genomic organization of Citrus RT Leprosis associated Virus, Cytoplasmatic type (CiLV-C)"; RL Virus Genes 32(3):289-298(2006). XX RN [3] RP 1-4975 RA Kitajima J.F.W., Martins A.R.; RT ; RL Submitted (06-AUG-2005) to the INSDC. RL Alellyx Applied Genomics, Rua James Clerk Maxwell, 320, Campinas, Sao Paulo RL 13069-380, Brazil XX DR MD5; 91710b18fc0c33c4499d985213722a84. XX FH Key Location/Qualifiers FH FT source 1..4975 FT /organism="Citrus leprosis virus C" FT /segment="RNA2" FT /mol_type="genomic RNA" FT /db_xref="taxon:347219" FT 5'UTR 1..66 FT CDS 67..459 FT /codon_start=1 FT /product="p15" FT /db_xref="UniProtKB/Swiss-Prot:Q1KZ57" FT /protein_id="ABA42873.1" FT /translation="MLNWSTIEWDSFWQQHDCGCFTFECDFITSIDPLVHDYAIYHSLS FT QKTVLEMLQTHLVAGPDASETIRRQVAFLIYDFHRLSCNCDKCYGDCNATTTGRFKVVD FT RVLNDHIEFGIMRRQDLIPILHNLET" FT CDS 1590..3203 FT /codon_start=1 FT /product="p61" FT /db_xref="UniProtKB/TrEMBL:Q1AF91" FT /protein_id="ABA42874.1" FT /translation="MALFQLFSFLNVTLGLVSNIYNSTGHLSIDKACSGYSTEAFKGVC FT LPSYSYVKVDRHILTKDDRYYLGYAKATNREYQLYSLHIGTYDLFGSDIMSCGARGYAL FT GLHNGDLELVLNYCRKVDGQKHIGEVFQSCRFVEYSEHMISGIVHSIPKDLMEEFSPIG FT KVPYFGIMPFRTECADQCSTKQAFYAMDAYPFYNIGYWFPLCADKYIPLCYSGRTDPCP FT LGYEERLIKVHSYMEGFESGMKTVCKSGEYIFPAWYSGQSEIYDTVVKPYIVNVPEYCG FT RFSRSDKSLVYSRFGFRGTIFSGLKVITLDGIDYLTTDFCVNYSMHHYVKPLVFERMRK FT SFICTSSGCLYKGFDVNHLHDICTPKLVVKRHEALISSFSFINTLGTKVGAVPYDFDGN FT IIQFIDVFSIDGFYVYSLSHKKIQTLTVMLVQSEEEWYMKLLHFVADDILRECLSTVFK FT VLFSAISACLSFIIDVGGCCFRQFIFVCLDSVILLLLLLPNYTHLTFILGFTLNAYIQL FT VYYESCCFRAYRDIAETIDL" FT CDS 3228..4121 FT /codon_start=1 FT /product="p32" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q1AF90" FT /protein_id="ABA42871.1" FT /translation="MALSTNNNSSHVGADDFLELENILSSEYNEEGIFKTSKTVCIRTD FT KRIGVGFLTPNDMISRLVGFINRKAEDAGVRSVESFRQISDVVLIIVPQIALPAELSLK FT LVDSANILEAVNDQEVTVNSTGGPCVVVMNCAHSIPNEDRTHVNGSEVHRRLGIQYQVD FT CDNISGRVTTFSITALWREAFSFRPSFYKVSDPLVVPISVGFRKAVIAKSHADLQRSIG FT RGLIVTHHSSQSSVTSESPIDLTVKKSTGLKIRDKSEDDNQRKHPVPLTSSNNKLKTLR FT VSTTPIVNGRSTSTSE" FT CDS 4093..4737 FT /codon_start=1 FT /product="p24" FT /db_xref="GOA:Q1KZ54" FT /db_xref="InterPro:IPR032441" FT /db_xref="UniProtKB/Swiss-Prot:Q1KZ54" FT /protein_id="ABA42872.1" FT /translation="MDAQLLQANKRLLRRAANVRQRYKMLATESFVADIKQILLRFIQK FT PNVIIMYISVLVLFAAHIDSNTHDILDDLAAQFPNNTFIEWAKSNFFRICGALVFIPVI FT IDTEEKHRNYLALVIFVFLMGFPQRSIMEYFIYSISFHVYAKAKHPVTRIFIIGAAVFS FT CVMFGIFTNEQLRKLYAELPKVPTHPVAVNRVEKVANRASRVSTEGTVNFG" FT 3'UTR 4738..4975 XX SQ Sequence 4975 BP; 1267 A; 903 C; 1113 G; 1692 T; 0 other; gataaatcta atcaatctat tgtattgttc taggctaata actctcaatt attagtgaac 60 attacaatgc tgaactggtc tacgattgag tgggacagtt tctggcaaca gcacgattgc 120 ggttgcttta cgttcgagtg tgattttatt acctctatag atccactcgt gcatgattac 180 gcgatttatc attctttatc tcaaaagact gttctcgaga tgcttcagac gcacttggtt 240 gccgggccag atgcatctga aacaattcga agacaagttg cctttctcat ttatgacttt 300 cacaggttat cctgtaattg tgataaatgt tatggggatt gcaatgctac cactaccggt 360 agattcaagg tggtcgatcg tgttttgaac gatcacattg aattcggtat tatgcgtcgt 420 caagacctaa taccgatact gcataatctt gagacttaat tgtcatctcg ctagcacatg 480 tttgtggggt atgacgagta ctaattcaag gtgcggggct acgccttatg attttgtcga 540 ctttcgcgtg ttgacaactt cattactggt cttaaaccgc ttaatcccaa tgcggggact 600 tgtgtttgtc atttgccata cttcacaaac atgtgctagc aagtgaatac atatgtttgt 660 acactgtatc atttgtttca tgagctgttt cagtcgggca tagtataaat aagagcgcaa 720 gggaagggac tgcgcatact aatacggttg ttcgagctca tgttgcttgt gaatcatagg 780 tagtcaacgc aggatttgtc tgcaatatct acggatcaag ggaaattgcg tggagatcat 840 gtacggagac ggcactacgc tgtataggat cttgagggat caaaccagcc ttaatccgct 900 tgccccaatg cggggacgtg tatgtattga agcgcggttt cctacgagaa gcagattgcg 960 ttgacatatt cttgactatc atgattgatg gagcttttgt ttaaccacgt agtacttgga 1020 cggaacggtg catcgccttg aggtaaggtc ataaagccga ttgccccaat gcggggacgt 1080 ccattgtatg aagcggggcg acaaagtttt cacttacagt ttacatcact tgtatttcac 1140 tttaagtata ttggtcattt gattgctatt tgacttgtca tatagttatc acttgacctt 1200 tgaactaata cagcgagtat tgaacgctgg tacgtatact attagggttt agtcctaata 1260 gtattcattt tcaaccactt tcaatattct ttgttttcat tgaatattga taattgttag 1320 atttattgct agggcttagc cctagcagta ttcatcttca accaccttca atattctttg 1380 cttatgccac gagtcacata tgatttgaga tgaattgtag ttgtgactac atgtaaccat 1440 aattgatttg ggagcgtagg cttccaggtt gatgccgacc ggtttgtata tattgtaaat 1500 gttgtaaata cagtttcata cgtacgtgcg gaacagtttg ctgtaaatac gagagcctac 1560 agcaaattaa gctaaaatag tattgtcaaa tggcgctatt tcagcttttt agtttcttaa 1620 atgttacgtt ggggctcgta tccaacatct acaatagtac gggacacctt agtattgata 1680 aagcctgttc ggggtacagt actgaggcgt tcaagggcgt ttgtctaccc tcgtatagtt 1740 atgtcaaggt tgatagacat atcttaacga aggatgatag gtactatctt ggttacgcta 1800 aggccacaaa tcgtgaatac cagttgtata gtttacatat tggtacctac gatttgttcg 1860 gtagtgatat catgtcatgt ggtgctaggg gctatgctct gggtctccac aacggagacc 1920 ttgagttggt tcttaattat tgccgtaagg tcgatgggca gaagcatatt ggtgaagtgt 1980 tccaaagttg tagattcgtt gagtatagcg aacatatgat ttctggaatt gttcactcga 2040 tacctaagga cttaatggaa gagtttagtc caataggcaa ggtaccgtat ttcggtatca 2100 tgccttttag gactgagtgc gcagatcaat gttctactaa gcaagcattt tatgcaatgg 2160 atgcttatcc tttttataac attggctact ggtttccatt atgtgctgac aagtatatcc 2220 cactatgtta cagcggtcgt acggatccat gtccacttgg atatgaggag aggcttataa 2280 aagtccactc atatatggag gggtttgagt ctggtatgaa gaccgtttgt aaatctggtg 2340 aatatatttt tccagcctgg tactcaggac aatcagagat atatgatacg gttgttaaac 2400 cgtatattgt taatgtccct gaatattgtg ggcgatttag tcgctctgat aagtccttgg 2460 tttattccag gtttggtttt agagggacta tcttttctgg gcttaaggtt attacattag 2520 atggtattga ttatttgacc acagatttct gtgtcaatta ttctatgcat cattatgtaa 2580 aaccgctggt ttttgaaagg atgcggaagt cctttatttg cacctcgtct ggttgtttat 2640 ataaaggctt tgatgttaat catcttcatg acatttgtac acctaaattg gttgtgaaac 2700 gtcatgaggc tttgatttct tccttttctt tcataaacac tctcggtacc aaagtgggtg 2760 ctgttcctta tgattttgat gggaatatca tacagttcat cgacgttttt agcatcgatg 2820 ggttttatgt ttactcgttg agtcacaaga agatccaaac tctcacagta atgctcgttc 2880 agtctgaaga agagtggtat atgaagttgt tgcattttgt tgcggacgac atacttaggg 2940 aatgtttgag tacagtcttt aaagtattgt tttccgctat tagtgcttgc ctatccttca 3000 ttattgatgt tggtggatgt tgcttccgcc aattcatctt tgtttgtttg gattctgtga 3060 ttttgttatt gctactgctc ccgaattaca cccatttaac gtttatctta ggatttacgc 3120 tgaatgctta catacagttg gtgtattatg agagctgttg ttttagagct tatcgcgaca 3180 tagctgaaac cattgatttg taaatcaatg gtgaatttta tgttgagatg gctctttcta 3240 ccaataacaa ttcttctcac gttggtgctg acgatttttt ggaattggag aatatcttat 3300 cctccgagta taatgaggag gggatattca agacttcaaa gaccgtttgc attcggactg 3360 acaagcgtat tggcgttgga tttctgacac cgaacgatat gatttctcgt ttggttgggt 3420 tcataaaccg taaagctgaa gacgctgggg ttagatctgt ggagtctttt aggcagatat 3480 ctgatgtcgt gcttataatt gtgccgcaga tagcgctccc ggccgagctg tcgctaaagc 3540 ttgtcgattc agctaatata ctagaggctg ttaatgacca agaggtcact gtcaatagta 3600 ctggtggtcc atgtgttgtt gtcatgaact gtgcccattc gattccgaat gaggacagga 3660 ctcatgttaa tggatctgaa gttcacaggc ggcttggtat acagtatcaa gttgactgtg 3720 ataatatttc aggtcgtgta acaacctttt cgatcactgc actatggcgc gaggcttttt 3780 cgtttcgacc atccttttat aaggtgtcgg atcctcttgt ggtcccaata tctgtgggct 3840 ttcgcaaggc agttattgcg aaatcacatg cagatttaca aaggtccata ggtagaggtt 3900 tgattgtcac tcaccactcc tctcaatcgt cagtcacgtc ggagagtccg attgacttga 3960 cggttaagaa gagtactggt cttaaaatac gagacaagag tgaggatgat aatcaaagaa 4020 aacatcctgt tccattgacg tcaagtaata ataagcttaa aactttaaga gtatcgacga 4080 cgccaattgt gaatggacgc tcaacttcta caagcgaata aacgcctctt gaggcgcgca 4140 gctaacgtta ggcaaagata taagatgttg gcaacggaaa gtttcgtcgc tgacatcaag 4200 cagattttgc ttaggtttat acaaaaacct aacgttataa ttatgtatat cagtgttttg 4260 gttctatttg ctgcgcatat agactcaaac actcatgata ttcttgatga tttggctgcg 4320 cagtttccta ataacacctt tattgagtgg gcgaagagta acttcttcag gatctgtggt 4380 gctctggtat ttataccagt tattatagat actgaagaga agcacaggaa ttaccttgct 4440 ttagttatat tcgttttcct tatgggtttt ccacaaagat cgattatgga gtatttcata 4500 tattccatat ctttccatgt gtatgctaag gctaaacacc ctgtcactcg gatttttatc 4560 attggggcag ccgtgttttc atgcgttatg tttggcatat ttaccaacga acaattgagg 4620 aagctttatg ctgaactccc gaaggtgcca actcatcccg tagctgtgaa cagggttgaa 4680 aaagttgcca atagggcttc tagggtgtct actgaaggca ccgtcaactt tggttgacac 4740 ctactggtgt tatgcggagg gttttcttgc ggttctttcc ctcactatat gttttgaatc 4800 gctaatctct ggtacttttt tttttgtatt gaagattatt tgaactatgt tcagtccggt 4860 cgttgtcagc tgggcgaggt tgaaattcct caagtttgat taatttctag tctcttctag 4920 ctggtggtgt accacttttt cttttttgat tttcttttct tttgtcttta tgaca 4975 //