ID   DQ146997; SV 1; circular; genomic DNA; STD; VRL; 1898 BP.
XX
AC   DQ146997;
XX
DT   25-AUG-2006 (Rel. 88, Created)
DT   25-AUG-2006 (Rel. 88, Last updated, Version 1)
XX
DE   Raven circovirus isolate 4-1131, complete genome.
XX
KW   .
XX
OS   Raven circovirus
OC   Viruses; Circoviridae; Circovirus.
XX
RN   [1]
RP   1-1898
RX   DOI; 10.1080/03079450600597345.
RX   PUBMED; 16595298.
RA   Stewart M.E., Perry R., Raidal S.R.;
RT   "Identification of a novel circovirus in Australian ravens (Corvus
RT   coronoides) with feather disease";
RL   Avian Pathol. 35(2):86-92(2006).
XX
RN   [2]
RP   1-1898
RA   Stewart M.E., Perry R., Raidal S.R.;
RT   ;
RL   Submitted (28-JUL-2005) to the INSDC.
RL   School of Veterinary and Biomedical Science, Murdoch University, South St.,
RL   Murdoch, WA 6150, Australia
XX
DR   MD5; fe2ac9bed25025dd6015bc88026ed35d.
DR   EuropePMC; PMC2812408; 20007276.
DR   EuropePMC; PMC3133700; 21177928.
DR   EuropePMC; PMC3647419; 23628223.
DR   EuropePMC; PMC3885698; 24416396.
DR   EuropePMC; PMC5165205; 27795441.
DR   EuropePMC; PMC6160883; 30078831.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1898
FT                   /organism="Raven circovirus"
FT                   /host="Corvus coronoides"
FT                   /isolate="4-1131"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /db_xref="taxon:345250"
FT   stem_loop       join(1871..1898,1..21)
FT   rep_origin      join(1892..1898,1..2)
FT   CDS             36..911
FT                   /codon_start=1
FT                   /product="rep protein"
FT                   /note="ORFV1; putative replicase"
FT                   /db_xref="GOA:Q0H9S9"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q0H9S9"
FT                   /protein_id="ABA53822.1"
FT                   /translation="MPPQKREAAAKRWCFTLNNYTDEEVSAVKAWNASEYHYAVVGREK
FT                   GENGTPHLQGYIHLKKKARLSTLKKLLSRAHWEKARGSDSDNEAYCTKDGDVILTLGMP
FT                   VEGNRSDLSGAVAAVKAGSRMVDIAREFSEVYVKYGRGLRELALLIGQKPRDFKTEFIV
FT                   VTGPSGVGKSRYANEYPGTKFYKMKGDWWDGYSNEDVVVIDDFYGWIPFCELLRLTDRY
FT                   PHKVPVKGSYVEFTSKVIIVTSNTHPDSWYNEEKCYLPALFRRINKWLTWNAIRFEDAP
FT                   DCMKKYPINY"
FT   regulatory      1077..1082
FT                   /note="putative"
FT                   /regulatory_class="polyA_signal_sequence"
FT   regulatory      complement(1115..1120)
FT                   /note="putative"
FT                   /regulatory_class="polyA_signal_sequence"
FT   CDS             complement(1116..>1847)
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="start site undetermined; ORFC1; putative structural
FT                   protein"
FT                   /db_xref="GOA:Q0H9S8"
FT                   /db_xref="InterPro:IPR003383"
FT                   /db_xref="InterPro:IPR038652"
FT                   /db_xref="UniProtKB/TrEMBL:Q0H9S8"
FT                   /protein_id="ABA53823.1"
FT                   /translation="SFIQVARRRRQTQAIRRRWRRRHWRRRRLTNRRGHRTNRVYRFKF
FT                   VRMYRQECAGSGDTTLKWATDGLNIMLDDFLDWGTINWRLPFEDYRIRLAKFEMRPLNE
FT                   NWGSWHGIGHNVPIQDNHLEDFFKKPGLETDPLANWDGARQWDLRKGFKRLFRPRPQIS
FT                   ITDTDAGNVTAALWLTNPRSAWIPLMKKGDQNLPSSGSRVKHYGLAISWPQPHDAILFH
FT                   AKVTIYVEFRQMNLTHLANPK"
XX
SQ   Sequence 1898 BP; 430 A; 438 C; 544 G; 486 T; 0 other;
     accggccact tggagccacg gagccccttg cagctatgcc tccgcaaaag agggaagcag        60
     ccgctaagag gtggtgcttc acgctgaata actacaccga tgaagaggtg tccgccgtga       120
     aggcgtggaa cgcgagtgag taccattacg ctgtcgttgg acgcgaaaag ggggagaatg       180
     gtacgccgca tttgcagggc tacattcatc taaagaagaa ggctcggcta agcactctga       240
     aaaaattact tagccgtgcc cattgggaga aagctcgcgg ttcggacagc gacaacgagg       300
     cgtactgtac gaaagatggg gacgtgatac ttaccctggg catgccggtg gaagggaacc       360
     gtagcgatct ctccggagct gttgccgccg tgaaagccgg aagtcgaatg gtggatatcg       420
     cgcgagagtt cagtgaagtc tacgtcaagt atgggcgtgg cttacgtgaa ctggcgcttc       480
     tgattggaca gaaaccgcga gatttcaaaa ccgaatttat cgttgtcacc ggtccgtcgg       540
     gcgtgggcaa gagccgttat gctaatgagt atcctggcac taagttttat aagatgaaag       600
     gggactggtg ggacggctac tctaacgagg atgttgtcgt tattgacgac ttttatggat       660
     ggataccttt ttgtgagtta ctgcgtctca ctgataggta tccacataag gttcctgtga       720
     aaggatcgta tgtggagttt acgtcgaagg tcatcatagt gaccagcaat acgcaccccg       780
     actcgtggta caatgaagag aagtgctatc tacccgcgtt gtttcggcgg ataaataagt       840
     ggctgacgtg gaatgccatc cggttcgagg atgcaccgga ttgtatgaag aagtacccta       900
     taaactattg atttcgcccc ctccctcata gtgcctttcg aggaaagagc aatcgcggcc       960
     agccaaggcg gccgcgttca cgggtacttc gcgagcgcac cgtcgcgagc gaagttccct      1020
     agtgaagttc cccgaggaaa acacttgaga tgaggcgatt tataattttt acacttaata      1080
     aataaagaca ggaaacagta ttgtgtgtct gtactttatt tagggtttgc gaggtgggtt      1140
     aggttcattt gtctgaactc tacatatatc gtcacttttg catggaatag tatagcatcg      1200
     tggggctggg gccaactgat ggcgaggccg tagtgcttta ctctagagcc cgagctgggt      1260
     aagttttggt ctcctttctt catcagaggt atccatgcgg atctggggtt ggttagccat      1320
     agcgctgcag taacgtttcc cgcgtcggtg tccgtaatgg aaatttgggg tcggggtcgg      1380
     aaaagacgct tgaatccttt gcggaggtcc cactgtctgg cgccgtccca gtttgctagc      1440
     gggtctgtct ccaggcctgg cttcttgaag aagtcttcaa ggtggttgtc ttgaatgggc      1500
     acattgtgcc ctataccatg ccatgatccc cagttctcgt ttagtggacg catttcgaat      1560
     tttgccagcc ggatcctgta gtcttcgaat ggtagcctcc aattaattgt tccccagtcg      1620
     aggaagtcgt ccagcattat gttgaggccg tcggtagccc atttcagggt agtgtcacct      1680
     gagccggcgc attcttgtct gtacatgcgg acaaacttga atcggtatac tctgttagtt      1740
     ctgtgaccac gcctattggt gagtctgcgt ctgcgccagt gacgtcgtcg ccatcgccgt      1800
     ctaatcgcct gtgtctgtcg gcgtctccta gcaacctgta tgaaagagcc aatcacgagc      1860
     tgtcacgtaa ccgtggctcc aagtggccgt tgagtatt                              1898
//