ID DQ145545; SV 1; linear; genomic RNA; STD; VRL; 5709 BP. XX AC DQ145545; XX DT 23-AUG-2005 (Rel. 84, Created) DT 19-AUG-2018 (Rel. 137, Last updated, Version 3) XX DE Soybean dwarf virus isolate Wisc3, complete genome. XX KW . XX OS Soybean dwarf virus OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5709 RA Domier L.L., Veetil T.T., Phibbs A., Barta A.; RT "Nucleotide sequence of a Wisconsin soybean isolate of Soybean dwarf RT virus"; RL Phytopathology 95:S25-S25(2005). XX RN [2] RP 1-5709 RA Domier L.L., Veetil T.T., Phibbs A., Barta A.; RT ; RL Submitted (26-JUL-2005) to the INSDC. RL Department of Crop Sciences, University of Illinois, United States RL Department of Agriculture - Agricultural Research Service, 1102 S. Goodwin RL Ave., Urbana, IL 61801, USA XX DR MD5; 24146f2b76b66b9c5eff0061a53921f2. DR EuropePMC; PMC5104775; 27544267. DR RFAM; RF00434; BTE. XX FH Key Location/Qualifiers FH FT source 1..5709 FT /organism="Soybean dwarf virus" FT /isolate="Wisc3" FT /mol_type="genomic RNA" FT /country="USA:Wisconsin" FT /db_xref="taxon:12049" FT CDS 127..1212 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF1" FT /db_xref="GOA:Q3YB91" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q3YB91" FT /protein_id="AAZ76354.1" FT /translation="MFNFDSLVTATARVVKDFISFCYNRARHVYYALKRWLWELQGVFA FT AHDAFVDMCYDAMYGVEEFEWELQKQYSTAEIDVQLAEHEYKRLLADGAPLGSWPQPCA FT PQGSFRSSDDFDVAARAAEANPIVDPQPSLIKGCGDKSPSNPTRIEKFINLVQKKEVLS FT ATEALIKHTYEEQIGESPFGKWFNTLPNRMNYIKRAAAKQAKAAKRSKSVRQMVTEVNV FT IPDFISCCDVVQVDTGEKLPSKKDKEGNELPPEPKLKMFRRVKPEHVGDARKHICQHIR FT NNNMRLIDGSDVSHATINRYALKFCEDLELDMTSTEMLIKYAMVMVPIPRKSDIEAAKI FT VQSPAARQIRHELGVLNAEVF" FT CDS <1197..2747 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2; translated by minus 1 (-1) ribosomal FT frameshifting" FT /db_xref="GOA:Q3YB90" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q3YB90" FT /protein_id="AAZ76355.1" FT /translation="RRGFLEGLCSDSGFESPFSILGLPEIVVRSGAIPRKSRSTINYLS FT QFSLGLDYQCPNPSLHNALVAVERRVFTVGKGNEVVLPYKNIPGIFSNLDYFRKSIVDK FT VGCPRTFSPEELAATYHSGKRTLYNAAVQSLKRKAVERSDANVTAFLKMEKHLMCKKIA FT PRLICPRNKRYNVELGRRLKFNEKKFMHAIDSTFDSPTVLSGYDSFKVGKIIANKWSKF FT KRPVAIGVDASRFDQHVGVEALQWEHSIYNGAFNDPILKELLHWQTENKIMLFVEDKIL FT KFKVKGHRMSGDINTSCGNKLIMCGMMHYYFKSLGVKAELCNNGDDCVIICEKKDENKF FT SHMHSWFKDYGFDMQIETPVYKIGQIEFCQSKPVKINGYYRMVRKQESISKDAHSLISM FT ASAEDVKTFMSATAQCGMILNSGVPVLDAFHKCLYKASGYKKVSQEAIERIVSFGTQDK FT LGLRKERVEEPITMDNRLSYWESFGVDPQTQVLVERYFDNLQVHIGTPRRKEIDAFTR" FT CDS 3019..5091 FT /codon_start=1 FT /transl_except=(pos:3619..3621,aa:OTHER) FT /product="ORF5 protein" FT /note="translated by in-frame readthrough" FT /db_xref="GOA:Q3YB89" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q3YB89" FT /protein_id="AAZ76358.1" FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPKXVDGEPGPKPGPDPTPPPAPPP FT EPTPAKHERFIVYTGTLSTLISARQNSDSISLYPIRDQRVRYIEDENANWAYIKAQWYS FT QNSVEAVPMFIYPVPQGTWSVEISCEGYQATSSTTDPHRGKSDGMIAYDDDQTKVWNVG FT VQNNVTITNNKADADWKYGHPNLTINGERFDQQQVVEKDGTVSFHLVTTGPNASFFLAG FT PAVKKIAKYNFCISYGAWTDRDMEFGLVSVVLDEHLEGVRGSQYVRKTLRPGHISVNRP FT HRLQIMPPTREDDSDGYSSSSDSNTYKTDNSPLTVHLVKAGDEENCTTDRSDDVEPILH FT DADVMKFSGFVGAKDRFMLQGADPIGPGDRSVRRFKPSATLKSAFHSGPTPDELYNAGT FT EQADHDFEHFVSRGKEKLQDEDPMAKLEREAGDLKPDSDNEDNDYDRTAPVFNPADGDP FT WSGINIKPRLKDQDMRSTLSTGTLKGGSLRPKKEPTPRFEPAPKSVLDRIRRRQV" FT CDS 3019..3621 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:Q3YB88" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q3YB88" FT /protein_id="AAZ76356.1" FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPK" FT CDS 3035..3604 FT /codon_start=1 FT /product="putative movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q3YB87" FT /protein_id="AAZ76357.1" FT /translation="MSQYNDDAIVEPHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE FT EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLSMASNGMIPV FT KTSSRSTTRGTETPRSQAPSRSRSLS" XX SQ Sequence 5709 BP; 1687 A; 1238 C; 1333 G; 1451 T; 0 other; agtaaagttg acacctttac agaagtgttc ttgctagtaa gagttatttc cttgtgaagt 60 aatacaagaa cctcctcccg gcatcttcgt atcgtgtttg aggaatctct agtgttattg 120 ttagttatgt ttaacttcga tagcttagtt acagccaccg ctagggtggt aaaagatttt 180 atttcttttt gctacaatag ggcacggcat gtttactatg ccctaaaaag atggctctgg 240 gaactccagg gtgtatttgc tgcgcatgac gcctttgtcg acatgtgcta tgacgccatg 300 tatggcgttg aggagttcga gtgggaactg caaaagcagt attccactgc agagattgac 360 gtgcaactag ctgagcacga atacaagcgc ctacttgccg atggcgctcc actagggtca 420 tggccacaac catgcgcgcc ccaaggctca ttcaggtcgt ctgacgactt tgatgtagct 480 gctagggctg ccgaggcaaa ccctattgtg gacccacaac cctccttgat taaagggtgt 540 ggcgataaat caccttccaa tcccactagg attgagaagt tcatcaacct cgttcaaaag 600 aaggaggtac tttccgctac tgaggctcta atcaaacata catatgaaga gcaaatcggt 660 gaatcaccat tcggaaagtg gttcaacact ctgcccaaca gaatgaatta cataaagagg 720 gcagcagcaa aacaagccaa ggcggctaaa cgatccaaat ctgtccgtca aatggttacc 780 gaggtaaacg tcattcccga ctttatctct tgctgtgatg ttgtccaggt ggacactggt 840 gaaaagctcc cttctaagaa agataaagaa gggaatgaat tgccacctga gcctaaactc 900 aaaatgttta gaagggtgaa gcctgagcat gttggtgatg ccaggaaaca catctgtcaa 960 catattcgca acaataatat gaggttgata gacggctctg atgtttctca tgcaaccatc 1020 aaccgatatg cgctcaagtt ttgcgaagac ttggagcttg atatgaccag cactgaaatg 1080 ctcattaaat atgctatggt catggtccca atccctcgaa aatctgatat cgaggctgct 1140 aaaatcgtcc aatctcctgc tgccaggcaa ataaggcatg agttgggcgt gcttaacgcc 1200 gaggtttttt agaggggctc tgctccgact ctggttttga atccccgttt tctattttgg 1260 ggttgccaga gatcgtggtg cgaagtgggg ctatccctag gaagagtcgt agtactatta 1320 attatttgag tcagtttagt ttaggtctag attaccaatg ccctaatccc agtttgcaca 1380 acgcattggt agcggttgaa cgtagggtgt tcaccgttgg gaaaggaaat gaggtagtgc 1440 taccttacaa gaacatacca ggaatcttct ctaatcttga ttatttccgc aagtctattg 1500 tggataaggt tggttgtcct aggacgttct cccctgaaga acttgcagcg acgtatcact 1560 ctggtaaaag aacgttgtat aatgctgctg ttcaaagtct taaacgtaag gctgttgaga 1620 ggagtgacgc gaatgtgaca gctttcctta agatggagaa gcatcttatg tgtaagaaga 1680 tagcacccag gttgatatgt ccccgcaaca aaagatacaa tgttgaattg ggacgtcgat 1740 tgaaattcaa tgagaaaaaa ttcatgcatg caatcgactc aacttttgat tccccaactg 1800 tattaagtgg atatgacagt tttaaagttg ggaagataat agccaataaa tggtcgaaat 1860 tcaaacgacc agttgcaata ggtgttgatg caagcagatt tgatcaacat gtgggggtag 1920 aagcactcca atgggagcac tcaatctata acggtgcgtt taatgatccc attctgaagg 1980 agttgctaca ctggcaaaca gagaataaaa taatgctgtt tgttgaagac aaaatcctca 2040 agttcaaggt caaaggacac agaatgtccg gtgacattaa cacctcctgt ggcaacaaat 2100 taatcatgtg tggtatgatg cactactact tcaagtcact tggagtcaaa gccgaactct 2160 gcaataacgg cgatgattgt gttatcatat gcgagaagaa agatgaaaat aagttctcac 2220 acatgcacag ctggtttaaa gactatgggt ttgacatgca gattgagact cctgtctaca 2280 agattggaca gatagagttt tgtcaaagta aaccagttaa aattaatggc tattatagaa 2340 tggtgcgtaa acaagaaagc atatccaaag acgcccattc cctcatttcc atggcatcag 2400 ctgaagatgt caaaacattt atgagtgcca ccgctcaatg cgggatgatc ttgaatagtg 2460 gtgtacctgt tcttgatgct tttcacaaat gcctatacaa agcatcgggg tacaagaaag 2520 tatcgcagga agcgatcgag aggatagtct ccttcggaac gcaggacaaa ctcgggctca 2580 ggaaagagcg agttgaagaa ccaataacga tggataatag gttgagttat tgggagtcct 2640 ttggggttga cccgcagaca caggtccttg tcgaacgata ttttgacaat ctgcaggtcc 2700 atatcggaac cccgcggcgt aaagagattg acgcctttac tcgataaaac tttgctttca 2760 attgcgagtg tagcacgaac atctgtatcg ctaccaatac tttcaaaata gaagcactca 2820 taatcaccat agtagttgta gtactagtag tagttagctg tttagattac gctagttcgt 2880 acaagtaagt tgcaacggat taccgatttt tatctgggtt tgctatcggc tttatagcta 2940 gcataccaat atcaatattg gcaatttact ttgtttacct aaaaatttca aagaatctga 3000 gaggaatcat caacgaatat ggtcgcggtt agcaatgtca caatacaacg acgacgcaat 3060 cgtagagccg cacgaagcgc tccacgagtt cagctcatgg ctattccaac gaccaccggc 3120 gcaacacagc gcagaagaag acaacgacga cgaaggagaa ataatagagg aggaggcaat 3180 atttccggag gatcaggcaa ggctcacaca ttccagtttt cgaaggacgg catcaatggc 3240 agttccaagg gaactatcac tttcgggccg tctttatcag agtgcaagcc actctctgat 3300 ggaatactca aggcctacca tgaatataag atcacgagta tcttattaca gttcatctcc 3360 gaggcctctt ccacctcgtc aggctccatc gcttatgagc ttgacccaca ctgcaagtac 3420 tccgaaattc aatcgctact caataaattc tcaattacaa agagcggttc gaaacgattc 3480 cccaccaagg ttatcaatgg cctcgaatgg catgatacca gtgaagacca gttcaaggtc 3540 cactacaagg ggaacggaga cgccaagatc gcaggctcct tcaagatcac gatcgttgtc 3600 ttaactcaga atcccaaata ggtagacgga gaaccggggc cgaaaccagg tccggacccc 3660 acacccccac cagcaccacc acctgaaccg acgccagcca aacatgaaag attcattgtt 3720 tacaccggta cactgtcaac actcatcagt gctcgacaga actcagacag tatatcactc 3780 tacccaattc gagaccagag ggtcagatat attgaagatg agaatgcaaa ctgggcgtat 3840 atcaaagcgc aatggtactc acagaattct gtggaagcag taccaatgtt tatctaccca 3900 gttccgcaag gtacttggtc agttgaaatc tcatgtgaag gttaccaggc aacatcgagc 3960 accacggatc cccaccgggg gaagtccgat ggaatgattg cttatgacga tgatcaaacc 4020 aaggtgtgga atgttggtgt acaaaataat gtaaccataa ccaacaataa agccgatgct 4080 gattggaaat acggccatcc taatttaacg attaatggtg aacgttttga ccagcagcaa 4140 gtagtcgaga aagatggaac ggtctcgttt catttagtaa ctactgggcc caatgcgagt 4200 ttctttttag ccggccctgc cgttaagaag attgccaagt acaatttctg tatatcatat 4260 ggagcttgga ctgaccgcga tatggagttt ggtttggtat ctgttgttct cgatgaacat 4320 ttagagggtg ttagaggttc tcagtacgtt aggaaaacgc taagaccagg tcacattagc 4380 gtcaatcgtc cacaccgatt gcaaatcatg cctcccacgc gagaggatga tagtgatgga 4440 tatagtagta gtagtgatag taatacatat aaaacggaca actctccctt gaccgttcac 4500 cttgtaaaag caggtgacga ggagaattgt acaacagatc gatcggacga tgttgaaccc 4560 atactccatg atgctgatgt catgaagttc tccgggtttg ttggagctaa agataggttt 4620 atgttacagg gtgctgatcc aatcggccct ggtgacaggt ctgtccgccg cttcaaaccg 4680 tccgctacat tgaagtctgc gttccattcg ggaccgactc ctgatgagtt gtataacgct 4740 ggcactgaac aagcggatca cgacttcgaa cactttgtct ctcgaggcaa ggagaagcta 4800 caggatgaag atccaatggc caaactcgaa agagaggctg gggatttaaa acctgatagt 4860 gataacgaag ataacgatta tgatcgaacc gctcctgtgt tcaacccagc agatggtgac 4920 ccctggtctg gcattaatat caagcctcga ttaaaagatc aggatatgag gtctaccttg 4980 agcactggca ccttaaaagg tggttcactg agaccgaaga aagaaccaac cccaaggttt 5040 gagccagcgc caaagtccgt tttagatagg attagacgta ggcaagttta atcttgcacc 5100 aatatagaag tagttagcgc tttccattgt caagtatagg agccaaattt ggtgagtccc 5160 gatcgatgga tcctgggaaa caggttcggt gaacaaaaaa ccggtaatct cggggagatg 5220 tcagctcccg tcgtatcact ttcggttgca tatccaaaga ataaccctat atttaacaac 5280 taaaaattag atagtttccg cctctcttgt aaaccacata caagatgcga gcttgtggag 5340 agtaccttcc cttgaataag gaaggttgaa agtttctggt tcccaaacca ttgatcaaaa 5400 ttggctctgc ttctggtgat tacactgccg ctgaatcaac agcgtaaaca aattcttatt 5460 ggtcactccg tgaaaagaga gtggctaata cgcccctttg atggcgttaa atgaaagcgt 5520 aggtcgcacg acaccccctg tcaaggacag tcaaccttgt gaagtcggga gaatacccga 5580 tagactgtgg tctagtatta aaatgactcg agggctcttc ctcgttaaaa agggggcgac 5640 ggcaggaaac tgctgtcatt aggcgaaagc ctctttgttg ttaaggtggc catcaggtcc 5700 acctgcccc 5709 //