ID DQ143874; SV 1; linear; genomic RNA; STD; VRL; 2644 BP. XX AC DQ143874; XX DT 23-AUG-2005 (Rel. 84, Created) DT 26-MAY-2006 (Rel. 87, Last updated, Version 3) XX DE Stocky prune virus segment RNA-1 polyprotein gene, partial cds. XX KW . XX OS Stocky prune virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Cheravirus. XX RN [1] RP 1-2644 RX DOI; 10.1007/s00705-005-0682-y. RX PUBMED; 16380812. RA Candresse T., Svanella-Dumas L., Le Gall O.; RT "Characterization and partial genome sequence of stocky prune virus, a new RT member of the genus Cheravirus"; RL Arch. Virol. 151(6):1179-1188(2006). XX RN [2] RP 1-2644 RA Candresse T., Svanella-Dumas L., Le Gall O.; RT ; RL Submitted (25-JUL-2005) to the INSDC. RL GDPP, INRA-Bordeaux, IBVM, BP 81, Villenave d'Ornon Cedex F-33883, France XX DR MD5; f8d57291dedd77e182250695aba702ea. DR EuropePMC; PMC2779359; 17226066. DR EuropePMC; PMC2861173; 20229114. XX FH Key Location/Qualifiers FH FT source 1..2644 FT /organism="Stocky prune virus" FT /segment="RNA-1" FT /isolate="Brugeres" FT /mol_type="genomic RNA" FT /country="France" FT /db_xref="taxon:340196" FT CDS <1..2388 FT /codon_start=1 FT /product="polyprotein" FT /note="contains proteinase and RNA-dependent RNA FT polymerase" FT /db_xref="GOA:Q3YC01" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q3YC01" FT /protein_id="AAZ76594.1" FT /translation="QRYEYYTVNSSKIPVAPGCTYHSYMISGDCGVISFAPGGSTLEGS FT GVVPPKVCIMHDSNKMRQSVDLQLGHGAFLTQEDLIGYEVLLDCVATGSCLPEVEPIIN FT GLSCDNVVCMGRLKKVSDAPHYSKKTQLERSLISDIVDLPCETVPAIISNEDPRIAVSC FT NPDFDVFVNGMEKYKKMAGPFEGVEGSDEQQDFHDALDDIFDCLNIESESLEEVSEEVA FT LRGLPDVEYFDPIVASTSEGYPWILERPSGCKGKAWLLEGVPGCFSVDPSSKFGKAKRE FT LELNLQQGVVPPLIGVECPKDERVARKKVTTKPKTRLFTVLPFEYNLLVREYFMDFVSK FT YMQRHNECPGKVGINPQSIEWTNLYENLRSKGTNWFNGDFERFDGITPRDVMVQLVIRI FT NKLYKRGDADRPLANKVRSLLMLMASDRYAIAGRNLYKVSCGIPSGFSLTVIVNSLVNE FT FFLRFAWKRIVRASLGEAFVHRSIMDREVHFAVYGDDNLVSVSDKYSSLYNLVSISSFL FT RERGVVLKNGQCKDEEDFPPFSPSPSTCDFLKRRFVLGSSGRVLAPLDKSSLLGCAHWV FT RKSQDPGEAIVQNVQGILRECVAFEENSYEFFHDMRRKLLGALQTKGIATSEILDLKSC FT LAAQQCDESPFLKKFQPCSSLPSVIIPSSNLFVEVVGGRVFLSGVLTPSSRLPENCVVV FT YCGWTEVHKPYIQSKHSLICKSNKGYSSKAVIRKVLSGLPMDKPIVFMSGDGLSQAVPP FT MLIYLRRLQGVDSKLGDDILARCVKASSGVIPPEWDQLINKW" XX SQ Sequence 2644 BP; 631 A; 481 C; 649 G; 883 T; 0 other; cagaggtacg agtactacac tgtgaatagt agtaaaattc ccgtagcacc aggttgcaca 60 tatcattctt atatgatttc tggtgattgt ggggttattt cttttgctcc aggtgggtcc 120 accttggaag ggtctggtgt tgtgccacct aaggtgtgta taatgcatga ctcaaataaa 180 atgaggcagt ctgtggacct tcagttgggt catggcgctt tccttacgca agaagatttg 240 ataggatacg aagtcctgtt agattgtgtt gctacgggaa gttgtctacc cgaagttgag 300 cccattatta atggcttgtc ttgtgacaat gtcgtttgta tgggtagact aaagaaggtc 360 tcagatgctc ctcattattc taagaagact cagttggagc gttcactaat ttctgacata 420 gtagatcttc cttgtgagac tgtgcctgcc attatttcca atgaagaccc taggatcgct 480 gtcagttgta acccagactt tgacgttttt gtcaacggta tggaaaagta caagaagatg 540 gctggtcctt tcgaaggggt cgaaggtagt gatgagcagc aagatttcca tgatgcactc 600 gatgacatat ttgattgttt gaatatagag agtgaatcac tggaagaggt ttctgaggaa 660 gtggcactta ggggtctgcc agatgttgaa tattttgacc ccattgtagc tagcacttct 720 gagggttatc cctggattct tgaaaggccg agtggctgta agggcaaagc ttggctactt 780 gaaggtgttc cggggtgctt ttctgtggac cccagttcca aatttgggaa ggctaagcgt 840 gagctggagt tgaaccttca gcaaggcgtg gtgcctccct tgattggtgt ggagtgtcct 900 aaggatgagc gtgtagctcg aaagaaagtt accaccaaac ctaaaactcg tttgttcact 960 gtacttccat ttgagtacaa tctccttgtg agggagtact ttatggattt tgtgagtaaa 1020 tatatgcagc gacataacga gtgtccaggt aaggtaggta ttaaccctca atctatcgag 1080 tggacaaacc tatatgagaa cttgagatcc aaaggaacta attggttcaa tggtgatttc 1140 gagcgatttg atgggataac tccacgagat gtgatggtac agttagttat tagaattaac 1200 aaattgtaca aacgaggtga tgcggaccga cctcttgcaa ataaggttcg cagtcttttg 1260 atgttaatgg cgagtgaccg ttacgccatt gctgggagga atttgtataa agtttcgtgt 1320 ggcattcctt ccggtttttc tttaacggtt attgtaaata gtcttgtaaa tgaatttttt 1380 cttcgttttg cttggaagag aattgttagg gcatcacttg gtgaagcctt tgtacaccgc 1440 tcaattatgg atcgtgaggt ccactttgca gtgtatggag atgataacct tgtttcagtc 1500 tctgataaat actcttcctt gtataatctt gtttctattt cttctttttt gagggagagg 1560 ggagttgttc taaagaatgg acaatgtaag gatgaggaag attttcctcc tttctcccca 1620 tctccttcca cttgtgattt tttgaagagg agatttgtcc ttgggagctc tggtagagtt 1680 ttagctcccc ttgacaaatc ttctctctta ggttgtgccc attgggtaag gaagagtcaa 1740 gaccctggtg aggcaattgt tcagaatgtt cagggtatcc taagggaatg tgttgcattt 1800 gaggagaact cctatgagtt tttccatgat atgcgtcgca aactcttggg tgccttgcaa 1860 actaaaggaa tagccacttc tgagattttg gatttaaaat catgtcttgc tgcacagcag 1920 tgtgatgaga gtcctttttt gaagaagttt caaccatgtt cttctcttcc ctctgtcatt 1980 ataccatcct ccaacctttt tgtggaggtg gtaggtggca gagtttttct ttctggggtt 2040 ttgacaccat cttctcgtct tccagagaat tgtgtggttg tctattgtgg ttggactgaa 2100 gtacataagc cctatattca gtccaagcac agcctcattt gtaagtctaa taagggttat 2160 agttcaaagg ctgtcattcg gaaggttctt tctggattgc caatggacaa gcccattgtc 2220 tttatgtctg gggatggtct tagtcaggcc gttcctccta tgttaattta tttacgtagg 2280 ttgcagggag ttgattccaa gttaggggat gatattctag caaggtgtgt caaagcatct 2340 tctggggtta ttccccccga atgggaccaa ctcattaata agtggtaaat taccactttt 2400 cttctttcat caggttgttg taacttggta aggttttccc cagccttcct gtttgtttgg 2460 ggttgagatt tcttctcttg tttagagttc ttcttcgtca cctgagtggc tggatagcct 2520 gtggcaagtt cctctttcct gagattttat ctctttcttt tatcgtatta gaagtgcaat 2580 atagcactgc gtctccgttt ctgcagtagt gttatagtgt cttttcctag tcggaaaaaa 2640 aaaa 2644 //