ID   DQ141605; SV 1; linear; mRNA; STD; VRL; 2116 BP.
XX
AC   DQ141605;
XX
DT   27-AUG-2005 (Rel. 85, Created)
DT   27-AUG-2005 (Rel. 85, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus polyprotein mRNA, partial cds.
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-2116
RA   Yao W., Zhou H., Zhang Q.M.;
RT   "Cloning and sequence analysis of the replicase gene of Sugarcane mosaic
RT   virus Fujian isolate";
RL   Unpublished.
XX
RN   [2]
RP   1-2116
RA   Yao W., Zhou H., Zhang Q.M.;
RT   ;
RL   Submitted (25-JUL-2005) to the INSDC.
RL   Crop Science, Key Lab of Eco-Physiology & Genetic Improvement For
RL   Sugarcane, China Ministry of Agriculture, Fuzhou, Fujian 350002, China
XX
DR   MD5; b6c2d7a7a0f6d452138be695bc7ea2b0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2116
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="sugarcane"
FT                   /mol_type="mRNA"
FT                   /country="China:Fuzhou, Fujian"
FT                   /isolation_source="mosaic-infected sugarcane leaf"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..>2116
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q3YE94"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q3YE94"
FT                   /protein_id="AAZ79453.1"
FT                   /translation="FWKHWISTIDGQCGLPLVDVKSKHIVGIHSLASTSGNTNFFVAMP
FT                   EDFNDYINNLVQTNKWEKGWHYNPNLISWCGLNLVDSAPKGLFKTSKLVEDLDMSVEEQ
FT                   CEVTKTWLTECIQDNLQVVAKCPGQLVTKHVVKGPCPHFQLYLSTHDEAKAYFAPLLGK
FT                   YDKSRLNRAAFIKDISKYAKPIYIGEINYDVFEKAIQRVIKILRDVEMQQCTYVTDEDE
FT                   IFQSLNLNAAVGALYTGKKKDYFKDFSNEDKSEIIMRSCERLYNGHLGVWNGSLKAEIR
FT                   PIEKTMLNKTRTFTAAPLETLLGGKVCVDDFNNQFYSHHLEGPWTVGITKFYGGWNRLL
FT                   EKLPDGWIYCDADGSQFDSSLTPYLINAVLHIRLQFMEEWNLGEQMLRNLYTEIVYTPI
FT                   ATPDGSVIKKFKGNNSGQPSTVVDNTLMVILAFNYAMLSSGIQDNEIDNCCKMFANGDD
FT                   LLLAVHPDYEHILDGFQTHFGNLGLNFDFNSRTREKSDLWFMSTQGLKYEGIYIPKLEK
FT                   ERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLLEMQPFANLAKEG
FT                   LAPYIAETALRNLYLGSGIKEEEIEKYFRQFAKDLPGYLEDYNEEVFHQAGTVDAGAQG
FT                   GGGNAGTQPPATGAAAQGGAQPPATGAAAQPPATQGSQPPTGGATGGGGAQTGAGVTGS
FT                   VTGGQRDKDVD"
FT   mat_peptide     <1..312
FT                   /product="NIa"
FT                   /note="nuclear inclusion protein; protease"
FT   mat_peptide     313..1875
FT                   /product="NIb"
FT                   /note="nuclear inclusion protein; replicase"
FT   mat_peptide     1876..2116
FT                   /product="coat protein"
XX
SQ   Sequence 2116 BP; 690 A; 425 C; 480 G; 521 T; 0 other;
     ttctggaaac actggatatc cacaatagac ggacaatgcg gtctcccatt agtagatgtc        60
     aagagtaagc acatagttgg aatacacagt cttgcatcaa ctagtggaaa tactaacttc       120
     tttgtcgcca tgcctgaaga cttcaatgac tacatcaata atcttgtgca aaccaacaag       180
     tgggaaaaag gatggcatta caacccaaat ctcatttcat ggtgtggtct caacctagtt       240
     gactcagctc caaagggtct tttcaaaact tcaaaattag tagaagacct tgatatgagc       300
     gttgaagaac aatgtgaggt tacaaagaca tggctcacgg agtgtattca ggataattta       360
     caggttgtcg caaaatgtcc aggccaactt gtcaccaagc acgttgtcaa aggcccatgt       420
     ccacactttc agctatacct gtcaacacat gatgaagcta aagcatactt tgcaccatta       480
     ctcggaaaat acgacaagag cagattaaac agagcagctt ttatcaaaga catttcaaaa       540
     tatgcaaaac caatctacat tggagaaatc aattacgatg tctttgaaaa ggctatacaa       600
     cgtgtaatta aaattcttag agacgtggaa atgcagcaat gcacgtatgt aacggacgag       660
     gatgaaatat tccagtcact taacctcaac gctgcagttg gcgccttata cacaggaaag       720
     aagaaagatt atttcaagga tttttcaaat gaggacaaat cggaaattat catgagatcc       780
     tgtgagcgtt tatacaacgg acaccttggc gtgtggaatg gttcactcaa agctgaaata       840
     aggcctatag agaaaacaat gttaaataag actcggactt ttacagcagc accattagaa       900
     actttacttg gtggcaaggt ctgtgttgat gatttcaaca accaattcta ctcgcaccac       960
     ttagaaggtc cttggacagt tggaataaca aagttttatg gtgggtggaa ccgtttgttg      1020
     gaaaaattgc cagatggttg gatatactgc gacgccgatg gatcacagtt cgacagctct      1080
     ttgacaccat atctcatcaa cgccgtatta cacattcgat tacaattcat ggaagaatgg      1140
     aacttaggag aacaaatgtt gcgaaacttg tacactgaaa tcgtgtacac accaattgca      1200
     acaccagatg gatctgtaat caagaaattt aaagggaata atagtggcca gccatcaact      1260
     gtagtcgaca acacgctaat ggtcatctta gcattcaatt atgcaatgtt gtcaagtgga      1320
     atacaagata atgaaattga caactgctgc aaaatgtttg ctaatggaga tgatctactg      1380
     ttggcagtac atcccgatta tgaacacata ctggatggtt ttcagaccca ctttggaaat      1440
     cttggtttaa attttgattt caattcacga acgagggaaa agtcggattt gtggttcatg      1500
     tcaacacagg gactcaagta tgagggcatt tacataccaa aacttgagaa ggaaagaata      1560
     gtcgccatac ttgagtggga tcgttcaaat ctacccgagc accgtttaga agccatttgt      1620
     gcagcaatgg tcgaagcgtg gggctatcca gatctcatac atgaaattcg gaaattttat      1680
     gcatggcttc tggaaatgca accatttgca aatctagcca aagagggtct agctccgtat      1740
     attgcagaaa cagcgcttcg taacttgtat ctaggttcag ggattaagga agaggaaatt      1800
     gagaaatact ttaggcagtt tgcaaaggac ctccctgggt atttagagga ttataacgaa      1860
     gaagttttcc accaagctgg aacagtcgat gcaggcgctc aaggaggagg tggaaacgcc      1920
     ggaacccagc cgccagccac tggagcagca gctcaaggag gagctcaacc accagcaact      1980
     ggggcagctg cgcaaccacc cgcgactcaa ggttcacaac cgcccacagg gggagctact      2040
     ggtggaggtg gtgcacaaac gggagctggt gtaactggct cagttacagg aggccaaaga      2100
     gacaaggatg tagatg                                                      2116
//