ID DQ139262; SV 1; linear; genomic RNA; STD; VRL; 6611 BP. XX AC DQ139262; XX DT 31-AUG-2005 (Rel. 85, Created) DT 31-AUG-2005 (Rel. 85, Last updated, Version 1) XX DE Odontoglossum ringspot virus strain Taiwan, complete genome. XX KW . XX OS Odontoglossum ringspot virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6611 RA Liao J.-T., Hu C.-C., Hsu Y.-H.; RT "Complete genome of infectious cDNA clone of Odontoglossum ringspot virus RT (Taiwan strain)"; RL Unpublished. XX RN [2] RP 1-6611 RA Liao J.-T., Hu C.-C., Hsu Y.-H.; RT ; RL Submitted (20-JUL-2005) to the INSDC. RL Graduate Institute of Biotechnology, National Chung Hsing University, 250 RL Guoguang Rd., Taichung 402, Taiwan XX DR MD5; 090e144d54aabc864f70537148bf309c. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01083; UPD-PK2. XX FH Key Location/Qualifiers FH FT source 1..6611 FT /organism="Odontoglossum ringspot virus" FT /strain="Taiwan" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /db_xref="taxon:12238" FT CDS 63..4916 FT /codon_start=1 FT /transl_except=(pos:3399..3401,aa:OTHER) FT /product="RdRp readthrough protein" FT /note="required for virus multiplication" FT /db_xref="GOA:Q3YFN1" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q3YFN1" FT /protein_id="AAZ81884.1" FT /translation="MAHFQQTMNNKVIEAGMGRNSLINDLAQRRVYDNAVEELNHRSRR FT PKVNFSKVISQEQIIQATNAYPEFEITFYNTQLAVHSMAGGLRALELEYLMMQIPFGSI FT TYDIGGNFSAHLYKGRDYVHCCMPNLDIRDVARHINQQDTVSTYLARLERSKRGLPVFQ FT QSAFNKYMNDPDAVCCDKRFQDCSYSVDLPGKTYAVALHSIYDIPADEFGAALLRKDVH FT ICYAAFHFSENLLLETTSAPLDEIGATFYKSGDRLSFFFQNESTLNYEHSYKNVIKYVC FT KTFFPASNRFVYHKEFMCTRVNTWFCKFTKVDTYFLFRGVYTRGEDSERFYTAMDEAWE FT YKKTLAMLNSERTIFRDRAAVNFWFPKVKDMVIVPLFDGSVTSGKMKRSEVMVNKDFVY FT TVLNHIRTYQDKALTYKNVLSFVESIRSRVIINGVTARSEWDVDKSVLQALSMTFLLQT FT KLAEAKDQVVLKKFQKFDDTVTNLFWKQISDAVGDLFPSIKERLISGGFVKVAEQSLQI FT KTPDEYITFADKLVMEYKATEELQHLDISKPLERAEKHYNALSELSVLKECDEFDITQF FT KNLCEEKDIDPDVVAKVIVAIMKNELTLPFKNPTPEALSDALSPLPKDLDMRFDLLKLS FT TCAPFPSVKTLDSGLLPKQSYGDERQFESQSVVSVSDFHLKSVESVKMKSMSSAVYTGP FT LKVQQMKNYMDYLSASISATVSNLCKVLKDVYGADPESAEKSGVYDVVKGKWLLKPKDK FT CHAWGVAELNNGEKVIVLLEWADGFPICGDWRRVAVSSDSLIYSDMGKLQTLLSCLKDG FT EPVPSDAKVTLVDGVPGCGKTKEILETVNFDEDLVLVPGKEACKMIIKRANKSGHVRAT FT KDNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFI FT NRVANFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNSKYDGKVLCTNDVIRSVDAEV FT VRGKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSV FT VRLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVCSDLSKVSDFILDMYKV FT DAGILXQLQVGSIFKGENLFVPCPKSGYISDMQFYYDTLLPGNSTILNEYDAVTMNLRE FT NNLNVKDCTIDFSKSVSVPRQQQEFFTPVIRTAAERPRSAGLLENLVAMIKRNFNSPDL FT TGILDIEDTAELVVNKFWDAYIIDELSGGNVTPMTSDAFHRWMAKQEKSTIGQLADFDF FT VDLPAIDQYKHMIKAQPKQKLDLSPQDEYAALQTIVYHSKQINAIFGPLFSELTRQLLE FT RIDSSKFLFYTRKTPEQIEEFFSDLDSTVPMEVLELDISKYDKSQNEFHCAVEYLIWEK FT LGLNGFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIP FT MDKVIKAAFCGDDSILYIPKGLDLPDIQSGANLMWNFEAKLYRKRYGYFCGRYIIHHDR FT GAIVYYDPLKLISKLGCKHIKSLDHLEEFRISLCDVSSSLNNCAYFGQLNDAIAEVHKT FT AVNGSFAFCSIVKYLSDKNLFRTLFYNGSSTKGKHQNL" FT gene 63..3401 FT /gene="RdRp" FT CDS 63..3401 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase/replicase" FT /db_xref="GOA:Q3YFN0" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q3YFN0" FT /protein_id="AAZ81883.1" FT /translation="MAHFQQTMNNKVIEAGMGRNSLINDLAQRRVYDNAVEELNHRSRR FT PKVNFSKVISQEQIIQATNAYPEFEITFYNTQLAVHSMAGGLRALELEYLMMQIPFGSI FT TYDIGGNFSAHLYKGRDYVHCCMPNLDIRDVARHINQQDTVSTYLARLERSKRGLPVFQ FT QSAFNKYMNDPDAVCCDKRFQDCSYSVDLPGKTYAVALHSIYDIPADEFGAALLRKDVH FT ICYAAFHFSENLLLETTSAPLDEIGATFYKSGDRLSFFFQNESTLNYEHSYKNVIKYVC FT KTFFPASNRFVYHKEFMCTRVNTWFCKFTKVDTYFLFRGVYTRGEDSERFYTAMDEAWE FT YKKTLAMLNSERTIFRDRAAVNFWFPKVKDMVIVPLFDGSVTSGKMKRSEVMVNKDFVY FT TVLNHIRTYQDKALTYKNVLSFVESIRSRVIINGVTARSEWDVDKSVLQALSMTFLLQT FT KLAEAKDQVVLKKFQKFDDTVTNLFWKQISDAVGDLFPSIKERLISGGFVKVAEQSLQI FT KTPDEYITFADKLVMEYKATEELQHLDISKPLERAEKHYNALSELSVLKECDEFDITQF FT KNLCEEKDIDPDVVAKVIVAIMKNELTLPFKNPTPEALSDALSPLPKDLDMRFDLLKLS FT TCAPFPSVKTLDSGLLPKQSYGDERQFESQSVVSVSDFHLKSVESVKMKSMSSAVYTGP FT LKVQQMKNYMDYLSASISATVSNLCKVLKDVYGADPESAEKSGVYDVVKGKWLLKPKDK FT CHAWGVAELNNGEKVIVLLEWADGFPICGDWRRVAVSSDSLIYSDMGKLQTLLSCLKDG FT EPVPSDAKVTLVDGVPGCGKTKEILETVNFDEDLVLVPGKEACKMIIKRANKSGHVRAT FT KDNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFI FT NRVANFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNSKYDGKVLCTNDVIRSVDAEV FT VRGKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSV FT VRLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVCSDLSKVSDFILDMYKV FT DAGIL" FT gene 4807..5718 FT /gene="MP" FT CDS 4807..5718 FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="GOA:Q3YFM9" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q3YFM9" FT /protein_id="AAZ81885.1" FT /translation="MGRLRFVVLLSIFPIKTFSEPCSTMALVLRESIKISEFINLSASE FT KLLPSALTAVKSVRISKVDKIISYENDTLSDIDLLKGVKLVENGYVCLAGLVVTGEWNL FT PDNCKGGVSICLVDKRMKRANEATLGSYHTSACKKRFTFKIIPNYSVTTADALKGIWQV FT MINIRGVEMEKGFCPLSLEFVSICVVYLNNIKLGLREKILNVTEGGPTELTEAVVDEFV FT EKVPMAARLKFFRSVNKKKPSNSSKFVNGKSRLNSRNKLNYENGDSDVGISVVDDIVVG FT NGVSDIRIDDDCESFDAQSDSY" FT gene 5721..6197 FT /gene="CP" FT CDS 5721..6197 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q3YFM8" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q3YFM8" FT /protein_id="AAZ81886.1" FT /translation="MSYTITDPSKLAYLSSAWADPNSLINLCTNSLGNQFQTQQARTTV FT QQQFADVWQPVPTLTSRFPAGAGYFRVYRYDPILDPLITFLMGTFDTRDRIIEVENPQN FT PTTTETLDATRRVDDATVAIRSAINNLLNELVRGTGMYNQVSFETMSGLTWTSS" XX SQ Sequence 6611 BP; 1968 A; 1175 C; 1434 G; 2034 T; 0 other; gtattgttcg attactacaa ttacaacaaa caattacaac aaaattcaca attcacatca 60 acatggcaca cttccaacaa acaatgaaca acaaagttat tgaggctggt atgggcagaa 120 acagcctcat taacgatttg gctcagagac gtgtttacga taacgctgtc gaagagttaa 180 accaccgttc tagacgccca aaggttaact tttccaaggt catttctcag gaacaaatta 240 ttcaagctac taatgcgtac cctgagtttg aaatcacctt ttacaacact caactcgctg 300 tccactcgat ggcgggaggt cttcgagcac tcgagctcga gtatcttatg atgcaaatcc 360 catttggttc tattacgtat gacatcgggg gaaacttttc agcgcactta tataaaggac 420 gagattacgt ccattgctgt atgcctaatc ttgacattcg cgatgtggct cgtcacatca 480 atcaacaaga tactgtttct acttatctgg ctaggctcga gagaagcaag aggggtcttc 540 cggtttttca gcaatcagct tttaataaat atatgaatga ccctgatgct gtgtgctgcg 600 ataaaaggtt tcaagactgt tcttactccg ttgatcttcc gggaaaaaca tacgctgtgg 660 cgcttcatag tatctatgat attccagcgg atgagttcgg agctgcctta ttacgaaagg 720 atgttcatat atgttatgct gcttttcatt ttagtgagaa tctgcttctt gagactacgt 780 ctgctccgct cgatgagatt ggagcgacgt tttacaagtc aggggataga ttatccttct 840 tctttcaaaa tgagagcaca ttgaattatg aacattctta caaaaacgta attaaatatg 900 tttgcaagac ttttttccca gcttcaaata ggtttgtcta ccataaggaa tttatgtgca 960 ccagagttaa cacatggttt tgtaagttca ccaaggtgga tacttatttc cttttccgag 1020 gggtgtatac taggggagaa gattctgaac gattttacac tgctatggat gaagcatggg 1080 agtataagaa aactttggca atgcttaata gcgaaaggac gatctttcgc gatcgcgctg 1140 cggttaactt ttggtttcct aaagttaagg atatggttat tgtgccgctt tttgatggtt 1200 ccgtcacttc aggaaagatg aaaagaagtg aagtcatggt taacaaggat tttgtttaca 1260 ccgttttaaa tcacatccgt acctatcaag acaaagcctt gacgtataaa aacgttcttt 1320 cctttgtcga gtcaattagg tctcgtgtga ttattaatgg tgtgactgca agatctgagt 1380 gggatgtaga caagtctgtg ttacaggcgt tatctatgac ttttctttta cagacaaagt 1440 tggctgaagc aaaagatcaa gtcgtactta aaaaatttca aaaatttgac gatacagtta 1500 ctaatctttt ctggaaacag attagtgatg ctgtaggcga tctcttcccg tcgattaagg 1560 aaaggctcat tagcggtggg tttgtaaaag ttgctgagca atctttacaa attaaaacgc 1620 ctgatgagta tatcaccttt gcagataaac tggttatgga atataaagca actgaagagc 1680 ttcaacatct agacattagt aagcctcttg agagagccga gaaacattat aatgctttat 1740 cggaactatc ggttctcaag gaatgtgacg agtttgatat aacgcaattc aagaatttat 1800 gtgaagaaaa ggacattgat ccagacgtcg tggcgaaagt gatcgtcgcc atcatgaaga 1860 acgaactcac actgcctttt aaaaatccaa cgcctgaagc attatcggat gctctttcac 1920 cgttacccaa agacttggat atgagatttg atctgcttaa attaagtacg tgcgcaccct 1980 ttccaagcgt taaaacttta gatagtggtt tattaccaaa gcaaagctac ggtgacgaaa 2040 gacaatttga gagtcaatct gtcgtgtctg tatctgattt tcatcttaag agcgtcgagt 2100 cagtaaaaat gaaaagcatg tcgtcagcgg tctacacagg tcccctcaaa gttcaacaga 2160 tgaagaacta tatggattac ctgtccgcat cgatttcggc tactgtttca aatttatgca 2220 aggtgctaaa ggatgtctat ggtgccgacc cagagtctgc agaaaagtct ggagtctacg 2280 atgtagtgaa aggcaaatgg ttattaaaac caaaggataa atgtcacgct tggggtgttg 2340 ccgaacttaa caatggcgag aaagtcatcg tattactcga atgggctgat ggattcccta 2400 tttgtggtga ttggcgacga gtggccgtct cttcagattc ccttatttat tcagatatgg 2460 gaaaacttca gacgttgtta agctgcttaa aggacggtga gcccgtacct tcggatgcga 2520 aagtcacgtt agtagatggc gttcctggtt gtggaaaaac aaaggaaatt cttgaaactg 2580 tgaattttga tgaggactta gtacttgttc ctggtaaaga agcttgtaaa atgattatca 2640 agagagctaa taagtctgga catgtaagag cgacaaagga taatgtaaga actgtggatt 2700 cgttcttaat gcatttgaag cctaagactt ataacaaact gtttatcgat gaaggtctga 2760 tgttacatac tggttgtgtc aactttctga tagcattgtc ccattgtcgt gaagcgatgg 2820 tttttggtga tactgaacaa attcccttta taaacagagt ggcaaatttc ccttatccga 2880 aacattttgc tacacttgtt tacgatcata gggaggttag gaggttatca cttagatgcc 2940 cagcagatgt tacgcatttt atgaactcca aatatgacgg gaaagtttta tgtacgaatg 3000 atgtgattcg ctcagttgat gctgaagtgg ttagagggaa aggggttttt aacccgaaaa 3060 gcaaaccgct taaagggaaa attatcacct tcactcaaag tgacaaagcc gaactgaagg 3120 agcgtggtta tgaagaagtt tcaacttttg gtgaaattaa caccgtacac gaaatccaag 3180 gtgagacctt tgaagacgta tcggttgttc gtttgacacc aactccattg gagcttatat 3240 caaagagttc accgcacgtt cttgttgcat tgacaagaca tactaaaagc ttcaaatatt 3300 actctgtggt tctcgatcct ctcgtcaaag tttgctctga tttaagcaag gtgtcagact 3360 ttatactgga tatgtataag gtcgatgccg ggatcttata gcaattacag gtagggagta 3420 tcttcaaagg cgaaaatcta ttcgtaccat gtcctaagtc tggttatatt tctgatatgc 3480 aattttatta tgacactttg ttacctggaa acagcactat tttaaacgag tatgatgcag 3540 tgactatgaa tcttcgtgaa aataatctta atgtcaagga ttgcacgata gatttttcta 3600 aatctgttag tgtcccgaga caacaacaag agtttttcac accagtcatt cgaactgctg 3660 ctgaacgtcc acgtagtgct ggtctccttg aaaaccttgt ggcaatgata aaaagaaatt 3720 ttaactctcc agatttgacg ggtatattag atattgaaga tactgccgaa cttgtagtta 3780 ataagttttg ggatgcttac attattgacg aactttctgg tggaaatgtt acaccgatga 3840 cttcagatgc ctttcacagg tggatggcta agcaggagaa aagtactatt ggtcaattag 3900 ctgattttga ctttgttgat ttacccgcta ttgatcaata caaacatatg attaaggcgc 3960 aacctaaaca gaagcttgat ctcagtcctc aagatgagta tgctgcactt cagactattg 4020 tttatcactc aaagcagata aatgcaattt tcggtcctct tttttccgaa ttaactagac 4080 agcttttaga gaggatagac agtagcaaat ttttgtttta cacccggaaa acgcccgaac 4140 agattgaaga gtttttctca gatttggatt cgacggtgcc aatggaagtt ctagagttag 4200 acatttcaaa gtatgacaaa tcccagaacg aattccattg tgctgttgag tacttgattt 4260 gggagaaact tggtcttaat ggctttctcg aagaagtttg gaaacaggga cataggaaga 4320 catccttgaa ggattacacc gcaggaataa agacttgttt atggtatcaa aggaaaagcg 4380 gagatgtaac tacatttatt ggcaatacag ttatcatagc tgcatgtctt gcgtcgatga 4440 tacctatgga taaggtaatt aaagctgcgt tttgtggaga tgatagtatt ctatacattc 4500 ccaagggact tgatcttcct gatatccaat ctggagcgaa tttgatgtgg aacttcgagg 4560 caaaattata tcgtaagcgt tacggatatt tttgcggaag gtatatcatt catcatgaca 4620 gaggtgccat tgtgtattac gaccctctta aattaatttc taagttaggt tgtaaacaca 4680 tcaaatcttt ggatcatttg gaagaattta gaatctcgct gtgtgacgta agctcttctt 4740 taaataattg tgcgtatttt ggtcaattga atgatgcaat tgctgaggtc cacaagaccg 4800 cagtaaatgg gtcgtttgcg ttttgtagta ttgttaagta tctttccgat aaaaaccttt 4860 tcagaacctt gttctacaat ggctctagta ctaagggaaa gcatcaaaat ctctgaattt 4920 attaatttat cagcctctga aaaactacta ccgtcagctc taacggctgt caagtcggta 4980 cgtatttcaa aggttgataa aattataagt tacgagaatg atactttgtc tgatattgat 5040 ttgcttaaag gtgtgaagtt agtagagaat gggtatgtgt gccttgccgg cctcgtcgtc 5100 actggtgaat ggaatttgcc ggacaattgc aaaggtggtg tgagtatctg ccttgtagac 5160 aaacgcatga aaagagctaa tgaagcaaca cttggctctt atcatacatc tgcttgcaag 5220 aagagattca cctttaaaat tatcccgaat tacagtgtca ccactgccga cgctcttaaa 5280 ggaatatggc aagttatgat aaatattaga ggtgtggaaa tggaaaaggg tttttgccca 5340 ttatctttgg agtttgtttc tatttgcgtg gtgtatttaa ataatataaa actcggactg 5400 agagaaaaga ttttgaacgt aacagaagga gggcccaccg aacttactga agcggttgtt 5460 gatgagttcg tggagaaagt tcctatggct gctaggctca agttttttcg ctctgtcaac 5520 aaaaagaaac ctagtaacag ttctaagttt gttaatggaa aatctagact taatagtcgt 5580 aataaattaa attatgaaaa tggtgatagt gatgttggta ttagtgttgt agatgatatt 5640 gtggttggta atggtgttag tgatattcgt attgatgatg attgtgagtc atttgacgcg 5700 caatctgatt cgtattgaat atgtcttaca ctattactga cccgtctaag ctggcttatt 5760 taagctcggc ttgggctgac cccaattcac taatcaacct ttgtaccaat tctctgggta 5820 atcagttcca aacacaacaa gctcgaacaa ctgttcaaca gcagtttgct gatgtttggc 5880 agccggttcc tactttgacc agtaggttcc ctgcaggtgc tggttatttc agagtttatc 5940 gctatgatcc tatattagat cctttaataa ctttcttaat gggtactttt gatactcgtg 6000 atagaataat cgaggtagaa aatccgcaga atccgacaac tacggaaaca ttagatgcaa 6060 ctcgtagagt tgatgatgca actgtagcaa taagatctgc aataaataat ctattaaatg 6120 agttagttag gggaactggt atgtacaatc aagtctcatt tgagacgatg tctggactta 6180 cttggacctc ttcctaatca tatttaggaa aataacgttg atagtgttga actatccgtg 6240 gtgcatacga taatgcatag tggttatccc tccacttaaa tcgaagggtt tttcactgcg 6300 gatatgtagg tttcctacgg tgaatataaa acttatatcc cgttgtgtac acgatagtac 6360 atagtgttta tccctccact taaatcgaag ggttttgtgt cagacgcgtg taaggagtgg 6420 tcaaccttac gacacattta aaataatgcg tccgtggtgc atacgataat gcatagtgtt 6480 tgtccctcca cttaaatcga agggttgtgt atatggatca tgcggataaa gttatactgg 6540 tgcagtataa cccgttgtac acataaaatt atgagggatt cgaattcccc cttacctcgg 6600 gtagaggccc a 6611 //