ID DQ136146; SV 1; linear; genomic RNA; STD; VRL; 8244 BP. XX AC DQ136146; XX DT 31-DEC-2005 (Rel. 86, Created) DT 08-MAR-2006 (Rel. 87, Last updated, Version 2) XX DE Tomato chlorosis virus isolate AT80/99 segment RNA2, complete sequence. XX KW . XX OS Tomato chlorosis virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-8244 RX DOI; 10.1007/s00705-005-0690-y. RX PUBMED; 16374719. RA Lozano G., Moriones E., Navas-Castillo J.; RT "Complete nucleotide sequence of the RNA2 of the crinivirus tomato RT chlorosis virus"; RL Arch. Virol. 151(3):581-587(2006). XX RN [2] RP 1-8244 RA Navas-Castillo J., Lozano G.; RT ; RL Submitted (19-JUL-2005) to the INSDC. RL Estacion Experimental La Mayora, CSIC, Algarrobo-Costa, Malaga 29750, Spain XX DR MD5; 134827689a0d5a454aae2b66bbd802f8. DR EuropePMC; PMC2786829; 19793810. XX FH Key Location/Qualifiers FH FT source 1..8244 FT /organism="Tomato chlorosis virus" FT /segment="RNA2" FT /host="Lycopersicon esculentum (tomato)" FT /isolate="AT80/99" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:67754" FT CDS 239..340 FT /codon_start=1 FT /product="p4" FT /note="small hydrophobic protein; ORF1" FT /db_xref="GOA:Q2QCI6" FT /db_xref="UniProtKB/TrEMBL:Q2QCI6" FT /protein_id="AAZ77647.1" FT /translation="MPTAGMLQPLLHFVIVYVMVSPISPYFFFVKFK" FT CDS 736..2400 FT /codon_start=1 FT /product="Hsp70" FT /note="heat shock protein 70-like protein; ORF2" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:Q2QCI5" FT /protein_id="AAZ77648.1" FT /translation="MSIKAGLDFGTTFSTISCFYNNKLFSLKLNGTEYIPTCLSITPNN FT EVIVGGPSQVLEASETPSCYFYDLKRWVGVTSVNYEVVKAKINPMYKTRLSNNKVYITG FT INKGFSTEFSVEQLILHYVNTLVRLFSKTENLKITDLNVSVPADYKSGQRLFMQAVCSS FT LGFNLRRIVNEPSAAAIYCVSKYPQYAYFYIYDFGGGTFDTSLIVRYGKFVTVADTQGD FT SFLGGRDIDKAISKFIMDKNALNTPLSADMLASIKEETNSTGRSSYNIISDDGSIINIQ FT FTFDDLVKCVEPFARRSFSILRSLVSRNKTSNGALFLVGGSSLLRPIQNRADGFARNHG FT LALIIDPDLRAAVSFGCSMLHAQEDSGNMTYIDCNSHPLMDLGLYCHPRIIIRKPMSVP FT YTHKIEREVTRFITTALNVYGGSDLFVLNNDWLISADVDYSKYAKMGETLVSVYKYTID FT GILELSMANKTTGKSWVLPNTFARSEKIVISDLTLTQLSNVDELATIVSILSYFDTTFN FT YLISMFNTPSIFEREVGKISDAKGLYNRLVEQNRNFS" FT CDS 2410..2613 FT /codon_start=1 FT /product="p8" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:Q2QCI4" FT /protein_id="AAZ77649.1" FT /translation="MLVCLVLRTNCLVKVLYFSDTPIVESGPLVIRSSDPTIIEDLLEY FT LPFVTESWSPLILPKESKDFSQ" FT CDS 2565..4118 FT /codon_start=1 FT /product="p59" FT /note="ORF4" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:Q2QCI3" FT /protein_id="AAZ77650.1" FT /translation="MEPVDTSERVKRLFSVVFKKSNNDEKIHKLADYLLKYYSTENRNL FT YRTTINNRAFSFTSTYSVSGGKVYLDTKEPWQVVKLIIIYLYKVEPGYLKKTNYSPENL FT FARLRFDDYYDEWNKYFDKDVNDYLADHPEEGCLYTMNDIVKEYPGEEPTAQLTLYRVC FT NSLGKKISVRELKEGKISAFKIESKTDNAEIGEGVGGNALFKECVETLQSYLLLNSSKA FT GREKIRANAKIFECYLSSLVPKGLDKKLAANPLVVAKFVNAFTVRTVNSKGFGDNFKAV FT KELSPEILSFIKRVFLVDARLNEDVLFIALPKNSVVEILGDKFAVGEYLRVQNVLPASS FT NSSSLPPDIDKCVSDALVTFMQSFGNFQPAFILDIWLFVFGKMTTNSKLWREDNEILVT FT VGDVVVKPTTSRLLSHVKNCVKRDFPQFSTDNIIRQWANLRGDRAKQMFQLMNFRPGLF FT SSIPGIKPYMRFDFFKMLDLSKCTREEIESYQTLRRVTESRSNKTACDDRCLESWILRK FT " FT CDS 4100..4336 FT /codon_start=1 FT /product="p9" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:Q4KRY5" FT /protein_id="AAZ77651.1" FT /translation="MDLEEMIKELGLAKVERFLTVYNQGRFVAFGNIETLLCLINQHFV FT EFNPQRAKLDIELSEVRDFLRCFESFRSFGLRK" FT CDS 4336..5109 FT /codon_start=1 FT /product="coat protein" FT /note="ORF6" FT /db_xref="GOA:Q2QCI1" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:Q2QCI1" FT /protein_id="AAZ77652.1" FT /translation="MENDAVTNTGDNGGSRNPLVRPLDDSVDDEVQNLGRRDDPTSLIP FT ANPNRSSSWALLNPDTINYNELRKLKVRSTRGDTLTLTQEEEFEKILESFCRRIIGETP FT MTDKIFAGFYMSMCQAIVNQGTSVKAAGNNSLENYFEVDGARFKWKTPDLINEVRPKMS FT DVPNAIRRYARSHEKIIQDFINSGLIKPDYHLQFKHGVLPSHVFGTGDYINGSLMNISD FT DRLISNLLMKRNALCKGNEGKELYNVNQLASITGC" FT CDS 5115..7124 FT /codon_start=1 FT /product="minor coat protein" FT /note="ORF7" FT /db_xref="GOA:Q2QCI0" FT /db_xref="UniProtKB/TrEMBL:Q2QCI0" FT /protein_id="AAZ77653.1" FT /translation="MDENEIYEDQEDLSARGGGGFYYQTVTLGSGDVFPVDLALTRSAE FT FDSTIFSLYIRFVIKEGNVRLKIDFGNNWDVSMQQVRLSGWFAAFGKIEKPRTARSGWS FT YPIKLFKEAGEVIVSISGWRCYKIYNGYPVDRVDLVLAVPVREVTADLKRPLVGDYVNF FT HDVFTLIKSKNIDITLPNPSLIFNDSTSKVNLDVSPGARKQIAQVKAEKDLNIKNPEDL FT KPDVPNDSLSEVEYHNHSDVSSVFRLYYTWRVERDFERSVESRIFFPNIFPTDFTILQQ FT MWYGTTAGNVETFVEIGKNDRKFNVGVAAWKDNSFGHFKLDGPTLAKISTIPGRFVDHK FT IEKDSKGHLIVSIDNTVLVRTNKLIVKPSIQIGWEFHLPWDAIRKYGVGNLARFTDIIK FT PNYIKFDSSEVPLVQTNTIESDRSKSGHKLSLVNLKSFRRISSTADFFFEPPPPSESDD FT KSWEDKVQTEVDIKKEETIPSNEGTSSSDLPSEKSQFVAANHYLLSIAEDRNIFKAAVD FT RYTGLGFSKDQAVLIIYQLGVTFGTSRNCCSDNSSFLVWKTDTGTQVIIRKGAHSRFLN FT SLVKYPCNVERLILRRRSAEILALLRNKKLAYPDRLAKKKGVSQGFTYMACDFLDYTAV FT TLTQEEQLTMNSVVQYVRLHNKHRRSIVSTSQLF" FT CDS 7128..7826 FT /codon_start=1 FT /product="p27" FT /note="ORF8" FT /db_xref="UniProtKB/TrEMBL:Q2QCH9" FT /protein_id="AAZ77654.1" FT /translation="MEVVYNSDDVNSGTGSGEDVNTTVAKNFYTITHVMSNYRNYTPDE FT IKDAVNVGYGLLNLCERLDRDVILVSPNSPVYNNYRDAGIPHNLLMENTARYFPVVNPS FT ELGKILLGHISVLKFLECFTRYGVDDMLITRLFSNFVLWSTGDVNAALYSIYQQDFHFP FT VEVRANFNFLFLNSSEIDRRLSNIRRKGYPNSENFNWFKNMISNYLYFDFVFRYSGTKI FT NIERISNYYI" FT CDS 7835..8032 FT /codon_start=1 FT /product="p7" FT /note="ORF9" FT /db_xref="GOA:Q2QCH8" FT /db_xref="UniProtKB/TrEMBL:Q2QCH8" FT /protein_id="AAZ77655.1" FT /translation="MISTYFTLIGLIFLVVFCFVLLCYFVFTVIKFFAKDKMSDDDCPY FT VNNVAPFGSNRFNSQPPIVR" XX SQ Sequence 8244 BP; 2400 A; 1419 C; 1815 G; 2610 T; 0 other; gaaatacaag tccaggtgtt tcctgtgggt acgcgatgag cctcccccac gttaattacc 60 ccaccgtcac taggtggacg tgattgtggg cgctgccggc ttcggtcgtc ggtgtctgct 120 ttcattttct agtgacgcta tgttgattaa tattaacata taacaaaaca aaacaaaaag 180 aaaataaaat agcaggccga gtaccataaa cttaactgaa ctgctcgagt ttttgcacat 240 gcctacggct ggtatgttgc agcccctctt gcactttgtt atagtgtatg ttatggtctc 300 gcctatatcc ccttactttt tctttgtgaa atttaaatga ccaaacagtg agtttgcacg 360 atcaaattac tatagaccgg aaagttcaga gttactctgc actttcgaag tcggctagtt 420 ggtaccgaca gttgatctat acgaattcaa ctatttggac gttatttaga aacgtgtttt 480 tgtgaattgt tatttgtaat aataaatgtt aaaggttgag tggttgagca tttacgtcgt 540 cagatggaaa ctttcttatt aactcataca tgttaatggt ttagtcttcc tctcgcgtat 600 ttagaatcat tcagtctagt acaacagtct cattgtatta tcgacaataa ttagcggtcc 660 agttaactca gtttaacttg attccgtttg tttttcccat tcttttattt gaactgtatt 720 cttgtctttt gtattatgag tattaaagct ggtttggatt ttggtactac gttcagtact 780 attagttgtt tctataataa caaattgttt tcattaaaac tcaatgggac cgagtatatt 840 ccaacttgtc tctccataac tccaaataat gaggtgatag tcggaggccc ttctcaagtt 900 ttagaagcct ccgaaactcc gtcttgttat ttctatgatt tgaaaagatg ggttggtgtc 960 acttcggtca attatgaggt agtgaaagcg aagataaacc caatgtataa aacgcgttta 1020 tctaataata aagtgtatat aactggtatc aataaaggtt tctcgaccga gttttcggtt 1080 gagcaactta tattacatta tgttaacact ttagttcgat tgttctcaaa aacagaaaac 1140 ttaaaaataa ccgatctcaa cgtgtctgtt ccggctgatt acaagtctgg gcagagactt 1200 ttcatgcagg cagtttgttc ctctttgggt ttcaatttac gtcgcatagt caatgaaccg 1260 tcggctgccg ctatttactg cgtttctaaa tatccgcagt atgcttattt ctatatttac 1320 gattttggtg gcggtacttt cgacacttct ttaatagtga gatatggtaa gtttgtcact 1380 gttgctgata cccagggaga ttcgtttctt ggtgggcgag atatagataa agccatatcg 1440 aagttcataa tggacaaaaa tgctttgaac accccactgt cggcagatat gttagcgtct 1500 ataaaggaag agacaaattc taccgggcgc agttcataca atataataag tgatgatggg 1560 agtataatca atattcagtt cacgtttgac gatttggtca agtgcgttga accattcgct 1620 agacgcagtt tttcaatact tcgaagtctc gtttctcgta acaaaacttc gaatggagcg 1680 ctgtttcttg tcggtggttc ttcattgctt agaccgattc agaatagagc agatggtttt 1740 gcgcgtaatc atgggttggc tctcattata gacccagatc tcagagctgc cgtgtcattt 1800 ggttgttcaa tgctccatgc acaagaggat tctgggaata tgacatatat agactgcaat 1860 tcacatccgt tgatggattt gggtttatat tgtcatccta ggattatcat cagaaaaccc 1920 atgtctgttc cgtacacaca caagattgag agggaggtca caagatttat caccactgct 1980 ctcaatgttt atggagggtc tgaccttttc gtacttaaca acgactggtt aatcagcgca 2040 gatgttgact attcaaagta tgctaaaatg ggtgagacat tagttagtgt ttataagtac 2100 accattgacg gcattttgga actgtcgatg gctaataaaa ccactggcaa gtcgtgggtc 2160 cttccgaaca cctttgccag gtccgaaaag atagtcatta gtgatttaac cttgactcaa 2220 ttgtcgaatg tcgatgaatt ggccactata gtgtcaattt tgagttattt tgatacaaca 2280 ttcaactatc ttatttccat gttcaacact ccgtcgattt ttgagcgaga agttggaaag 2340 atatctgacg ccaaaggtct ttataaccga ctcgttgaac aaaacagaaa tttctcttga 2400 aggtttgtta tgttagtttg tttagtactg agaactaact gtcttgttaa agtcttgtat 2460 ttctctgata ctccaattgt cgagtccggc ccattagtaa taagaagctc agatccgacc 2520 attatagaag accttctaga gtacttacct ttcgtcactg agtcatggag cccgttgata 2580 cttccgaaag agtcaaaaga cttttctcag tagtattcaa gaaatcgaac aacgatgaga 2640 agattcataa attggctgat tatctcttga aatattattc aacggaaaac agaaatttgt 2700 ataggacgac cattaataat agagctttct cttttacttc tacatattcg gtctctggtg 2760 gtaaagttta tctcgacacc aaggaacctt ggcaggttgt gaagctgatc atcatatatt 2820 tgtacaaggt agagcctggt tatcttaaga aaactaacta ctctcccgaa aatcttttcg 2880 ctagattgag gttcgatgat tattacgatg agtggaataa gtattttgac aaggatgtca 2940 acgattatct tgccgaccat cctgaagagg gatgtttgta caccatgaac gacattgtga 3000 aggaatatcc gggtgaagaa ccgactgcac aactaactct gtacagggtt tgtaactcgc 3060 ttggaaaaaa gatatcggtt cgagaactta aggagggaaa aattagtgct tttaaaattg 3120 agtcaaaaac tgataacgct gaaattggag aaggtgttgg tggtaatgct ctgttcaaag 3180 agtgtgttga gactttgcag agttatttgc tcttgaattc ttccaaagcg gggcgggaga 3240 agatccgcgc taatgctaag atttttgagt gctatttgtc gagtctggtt ccaaaaggtc 3300 tagataagaa attagcggcg aatccattgg ttgtggctaa attcgttaat gcgtttacgg 3360 tccggactgt gaacagcaag ggatttggtg acaattttaa ggccgtgaag gaattgtctc 3420 ctgagatttt gagtttcatc aagagagtgt ttttggtcga cgccaggctt aatgaagatg 3480 tgttgtttat agcactcccg aagaactctg tagttgagat tcttggtgac aaatttgctg 3540 tcggtgaata tttaagagtg caaaatgttt tgccagcttc gagcaactca agtagcctcc 3600 caccagatat cgataagtgc gtgtctgatg ccttggttac tttcatgcag tcgttcggta 3660 attttcaacc agccttcata ctagatattt ggttatttgt gtttgggaag atgaccacca 3720 attccaaact ttggagagag gataatgaga tcctagtgac ggtgggggac gtagttgtga 3780 agccaactac cagtaggtta ttgtcacatg tgaaaaactg tgtcaaacgg gactttcccc 3840 agttctcgac cgacaatata atcagacagt gggctaattt gaggggtgac agagcgaagc 3900 aaatgtttca attgatgaac ttcagacccg gtttgttttc gagtataccg ggtatcaaac 3960 cgtatatgcg cttcgacttc tttaagatgt tagatttgtc gaaatgtact cgtgaagaaa 4020 ttgaaagtta tcaaacatta cgtcgggtga cggaaagtag gtccaataag actgcttgtg 4080 acgataggtg tttggagtca tggatcttga ggaaatgatc aaagagttag gtctggctaa 4140 agttgagaga tttctcactg tctataatca aggtaggttt gtagctttcg gaaatataga 4200 aactctactc tgcctgatta atcaacattt tgtggagttt aatcctcaaa gagctaaact 4260 ggacattgaa ttgtctgaag tgagagattt cttgaggtgt tttgaatctt ttagaagctt 4320 tggtttaagg aaataatgga gaacgatgct gttacaaaca ctggtgataa tggtggcagc 4380 cgcaatcctc tggttagacc gttagatgat agcgtagatg acgaggtgca gaacttaggc 4440 aggagggacg atccgacatc tctcattccg gctaatccta atcgatcttc cagttgggct 4500 ttgttgaacc cggatactat taattataac gagttaagga aattgaaggt acgctccact 4560 aggggtgata ctcttacctt gactcaggaa gaggagttcg agaagatact cgaatccttc 4620 tgcaggcgaa taatcggtga gaccccgatg acagataaga ttttcgctgg tttctacatg 4680 tctatgtgtc aggccattgt aaaccaaggg acctcagtta aagcagccgg taataacagt 4740 cttgaaaatt actttgaggt agatggcgcg agatttaagt ggaaaactcc ggatttgata 4800 aatgaggtta gacccaaaat gtccgatgtt ccaaacgcta tacgtcggta cgccaggagt 4860 catgaaaaga ttattcagga ttttattaac tccggtctta ttaagcctga ttatcattta 4920 caattcaaac atggcgtatt accaagccat gtgtttggta ccggcgatta tataaatggt 4980 tcgttgatga atatctcaga tgatcgactt atctcgaacc tgcttatgaa aagaaacgct 5040 ttgtgcaagg gtaacgaggg caaggaactg tacaacgtta accagcttgc atcgataact 5100 ggttgctaaa ttatatggat gaaaatgaaa tctatgagga tcaagaggat ctctctgctc 5160 gtggcggtgg gggtttctat taccagaccg tgactttggg ttccggtgat gtgtttcccg 5220 ttgatttagc cctaacgaga tcggccgaat ttgattcgac aattttctcc ttatatatta 5280 ggttcgtaat taaggagggg aatgtgcgtt taaagatcga ttttggaaat aattgggatg 5340 tgtctatgca gcaggtgaga ctttctggat ggtttgcggc gtttggtaaa attgaaaaac 5400 cgagaaccgc caggtctgga tggtcatacc caataaaatt gtttaaagag gctggagaag 5460 tcatagtgtc cattagtggt tggaggtgtt ataaaattta taatggatat cctgtagatc 5520 gcgttgattt ggttctggca gtacccgttc gtgaagtaac agccgattta aaacgaccgt 5580 tggttgggga ttacgtcaac tttcatgatg tatttactct tataaagagt aaaaatattg 5640 acatcacttt acctaacccg agtctgatat tcaacgattc gacaagtaag gttaatttag 5700 atgtgtctcc aggtgcgcga aaacaaattg ctcaagttaa ggctgagaaa gacttgaaca 5760 ttaagaatcc tgaagactta aagcctgatg ttcctaatga ttcgctgagt gaagtcgaat 5820 atcataatca ctctgatgtt tccagtgttt tcagattgta ttacacatgg agggttgaaa 5880 gagattttga aagatcagtt gagtcgagaa ttttctttcc gaatatattt ccgaccgatt 5940 tcacaatact tcaacaaatg tggtacggga cgactgccgg taacgttgag acttttgtgg 6000 agataggtaa aaatgatagg aagttcaacg ttggggtcgc cgcttggaag gacaattcat 6060 ttggacattt caaattagat ggcccgactt tagcgaagat ctcaacaatt ccaggcaggt 6120 tcgtggacca taaaattgaa aaagactcta aaggacattt gattgtgagt attgataata 6180 ctgttcttgt gcgtactaac aaactgatag tcaaaccgag tattcagatc ggctgggaat 6240 ttcatttacc atgggacgcg atcagaaagt atggagttgg taatttggcc aggttcacag 6300 acatcatcaa acccaattac atcaagtttg atagttctga agttcctttg gtacaaacta 6360 atactataga aagtgatcgt tccaagtctg gtcataaact atctctagtc aacctgaaaa 6420 gtttcagacg tattagttct actgcagatt tcttcttcga accaccacca ccctctgagt 6480 ccgatgacaa aagttgggaa gataaggtcc aaaccgaagt ggatataaag aaagaagaga 6540 ctattccgtc taatgaaggc acctcttcct ctgatttgcc gagtgagaag tcacaatttg 6600 ttgcagctaa tcattacctc ttgtcgatag ctgaagacag gaatattttt aaagcggctg 6660 tagatcggta taccggcttg ggtttctcaa aggatcaagc tgtgttgata atatatcaat 6720 tgggggtaac attcggcact tccagaaatt gttgcagtga taattcatcg tttctagtct 6780 ggaagactga taccggaacg caggttataa tcagaaaggg cgcacactcc aggtttctca 6840 attcactggt taaatatcct tgtaacgtgg agagattgat actacgaaga cgtagtgcgg 6900 agatattggc gttgttgagg aacaagaaat tggcttaccc agatagattg gccaaaaaga 6960 aaggggtaag tcagggattc acatatatgg catgtgattt tctcgattac actgcggtaa 7020 cgttaactca agaagagcag ttgactatga attctgttgt gcagtacgtg agactccata 7080 ataaacatcg aagaagcatt gtgagcacga gtcagctttt ctgatcgatg gaggtcgtgt 7140 acaattcaga cgatgttaac agtggaactg gatccggtga agatgtaaat acgaccgtgg 7200 ccaagaactt ttatactata actcacgtta tgagtaacta ccgtaattac acaccagacg 7260 aaattaagga tgctgtgaat gtaggttatg ggttactgaa tttgtgtgag aggttggata 7320 gagatgtaat acttgtgtct ccgaattcac cagtttacaa caattaccga gatgccggaa 7380 ttccacacaa tttacttatg gaaaatactg cacggtattt cccagtagtt aatccgagtg 7440 aattaggaaa aattctattg ggtcatatca gtgttttaaa gtttttggag tgtttcacaa 7500 gatacggggt tgacgatatg ctaattacaa gattgttctc aaattttgtc ttgtggtcca 7560 ctggtgacgt gaacgcagca ttatattcta tttatcaaca ggattttcac tttcctgttg 7620 aggtaagagc gaattttaat ttcttatttt tgaattcaag tgaaattgac agaaggttga 7680 gtaacattag aaggaaaggt tatccaaact ctgagaattt caattggttc aaaaatatga 7740 taagtaatta cttatatttt gattttgtgt tcagatactc tggtacaaaa atcaatatag 7800 aaagaatctc aaattactat atttgatttt caatatgatt tccacttatt ttaccttaat 7860 aggtttaatt ttcttggtgg tattctgttt tgttttattg tgttatttcg tcttcactgt 7920 cattaaattc ttcgcgaaag ataagatgag tgacgatgat tgtccttatg tcaataatgt 7980 tgctccattc gggagtaaca ggtttaactc acaacctcca atcgttcgtt aaagtactat 8040 attacggttg gattaataaa aatttttaag gagtttttga taaagttttc ttcttcgggt 8100 tatttacttc gtattttata aaatcccaaa aatatatgaa agattttaca tattgttctg 8160 tttagttggt gtgaaattct atctacctaa attacgtgtt atacacgtaa accttggtag 8220 atttagtata taaataaata ggtc 8244 //