Dbfetch
ID DQ132996; SV 1; linear; genomic RNA; STD; VRL; 5723 BP. XX AC DQ132996; XX DT 14-AUG-2005 (Rel. 84, Created) DT 25-JAN-2006 (Rel. 86, Last updated, Version 2) XX DE Beet mild yellowing virus isolate IPP, complete genome. XX KW . XX OS Beet mild yellowing virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5723 RX DOI; 10.1099/vir.0.81565-0. RX PUBMED; 16432033. RA Stephan D., Maiss E.; RT "Biological properties of Beet mild yellowing virus derived from a RT full-length cDNA clone"; RL J. Gen. Virol. 87(Pt 2):445-449(2006). XX RN [2] RP 1-5723 RA Stephan D., Maiss E.; RT ; RL Submitted (18-JUL-2005) to the INSDC. RL Institute for Plant Diseases and Plant Protection, University of Hannover, RL Herrenhaeuser Str. 2, Hannover, Lower Saxony 30419, Germany XX DR MD5; d5dafcb4aa0aadc46fed7d72850c3a8e. DR EuropePMC; PMC3784903; 24426276. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5723 FT /organism="Beet mild yellowing virus" FT /isolate="IPP" FT /mol_type="genomic RNA" FT /country="Germany" FT /db_xref="taxon:156690" FT gene 32..751 FT /gene="orf0" FT CDS 32..751 FT /codon_start=1 FT /gene="orf0" FT /product="P0" FT /note="putative suppressor of silencing" FT /db_xref="GOA:Q45GC0" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q45GC0" FT /protein_id="AAZ57424.1" FT /translation="MQFQLKTNSFTCSLNRPLTATERVCNTAYFLTHHLPLITFENENC FT IRSLLAALPLLLSKQLDPGSLVYTPGKRQSLRLARFYNYCGTALPSTRNVDLRVPPRKD FT VKRFYLARNSGRNLGERLQRRGEIFFHGEAEFKKFLSVWCAESERKLRESPKINIKMDR FT IIMVLRDMGTLLHRLVFVEELYHRNTYAELAFCVHHLFGEARGMDFWRLANFPGKWFIC FT SHETYLENSFIQKELRL" FT gene 156..3400 FT /gene="orf1-2" FT CDS join(156..1553,1553..3400) FT /codon_start=1 FT /gene="orf1-2" FT /product="P1-P2" FT /note="putative RNA-dependent RNA polymerase; artificial FT frameshift" FT /db_xref="GOA:Q45GB9" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q45GB9" FT /protein_id="AAZ57426.1" FT /translation="MKTAFVLFSLLCLCCLVSSSTLGASFTLPGNASLYDWPGSTITAE FT PLCPALATLTYECPPEKTLKDFTLPEIQAEIWGRGYNAVEKFSFTVKQSLKSSFQYGVL FT KAKENYGRALRSTLKWIVLLWSYVIWALSCTAWYLLKNYTIEILMLSSLFAFTTFLVKL FT AVWIFGGWLTSLVNGLFALTKRILKTLSSRKSYVCERSVKGFLTFTIKQSPPRNCILQI FT QHADGSHAGYATCVTLFDGTNGLLTAQHVVDDFYEGDPKKTLKVVSTRNGNKIPLDEFR FT VTYTSEKRDQLLMHGPPNWEGVLACKAVHMIPASSVAKSKATFFALSDGEWHSSNAELV FT GTSKCGKFISVLSDTKSGHSGTPYFNGKSVLGVHIGSPKEFESENVNYMSPIPRFPGLT FT SPNYIFETTALAGKFFSQEEVEELMEDFSLQEIYSIATARGKYIKYEACPDEETFHDVL FT TESSPMQGGRKGGSDRRNNRKRKHPREIRRKWKKPSCCSFYTAGTLGENCTASHVHCTS FT KEEYDEWPRCWCQIAGHDCHYRSNLRDKEGSDRQNGFEIDRETSGRDTIVDGHEEAPLK FT RAEKIQEQAKQFGCFFKTQYHWERAAEVCPGFIKVGELPKFYFSKQKGCSDWGTKLTSL FT HPELEEKTRGFGWPKFGPAAELKSLRLQAARWLERAEQVKIPSTEERERVIEKCVEAFS FT PTQTRGPMATRGSKLSWNNFLEDFKTAVFSLELEAGVGVPYVAYGRRTHRGWIEDPDLL FT PVLARFTFDRLQKLSEAKFEHMSPEQLVQEGLCDPIRLFVKGEPHKQSKLDEGRYRLIM FT SVSLVDQLVARVLFQNQNKREIALWRAIPSKPGFGLSTDGQVVDFMQALSAQVGVNTAE FT LLQDWKSHLIPTDCSGFDWSVSDWLLEDEMEVRNRLTLDINDLTRRLRAGWLKCLANSV FT LCLSDGTLLSQQVPGVQKSGSYNTSSSNSRIRVMAAYHSGASWAIAMGDDALESVDADL FT SRYSSLGFKVEVSSQLEFCSHIFEEENLAVPVNKAKMLYKLIHGYEPECGNLEVLTNYL FT AACFSILNELRSDPELVAPLYQWLVLPVQPQKI" FT gene 156..2126 FT /gene="orf1" FT CDS 156..2126 FT /codon_start=1 FT /gene="orf1" FT /product="P1" FT /note="putative protease" FT /db_xref="GOA:Q45GB8" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q45GB8" FT /protein_id="AAZ57425.1" FT /translation="MKTAFVLFSLLCLCCLVSSSTLGASFTLPGNASLYDWPGSTITAE FT PLCPALATLTYECPPEKTLKDFTLPEIQAEIWGRGYNAVEKFSFTVKQSLKSSFQYGVL FT KAKENYGRALRSTLKWIVLLWSYVIWALSCTAWYLLKNYTIEILMLSSLFAFTTFLVKL FT AVWIFGGWLTSLVNGLFALTKRILKTLSSRKSYVCERSVKGFLTFTIKQSPPRNCILQI FT QHADGSHAGYATCVTLFDGTNGLLTAQHVVDDFYEGDPKKTLKVVSTRNGNKIPLDEFR FT VTYTSEKRDQLLMHGPPNWEGVLACKAVHMIPASSVAKSKATFFALSDGEWHSSNAELV FT GTSKCGKFISVLSDTKSGHSGTPYFNGKSVLGVHIGSPKEFESENVNYMSPIPRFPGLT FT SPNYIFETTALAGKFFSQEEVEELMEDFSLQEIYSIATARGKYIKYEACPDEETFHDVL FT TESSPMQGEGRAAPTAGTTGNASTHERSAGNGKSPRAAPSTPREPSVKTAPQATYIAPQ FT KRNMTNGRDAGAKLQATTATTDQISEIKKALIDKMDLKSIERQVVETLSSMAMKKPRSR FT GRRRSKNKQNNLDASSKPSTTGKEPQKSAPVSSKSVSSPSFTSLNKKDARIGARSSPAS FT TQNWRRKPEASGGPSSGQRRN" FT gene 3598..5610 FT /gene="orf3-5" FT CDS 3598..5610 FT /codon_start=1 FT /transl_except=(pos:4204..4206,aa:OTHER) FT /gene="orf3-5" FT /product="P3-P5" FT /note="minor coat protein; read-through protein" FT /db_xref="GOA:Q45GB7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q45GB7" FT /protein_id="AAZ57429.1" FT /translation="MNTVVGRRTINGRRRPRRQTRRAQRSQPVVVVQASRTTQRRPRRR FT RRGNNRTRRTVSTRGTGSSETFVFSKDNLAGSSSGSITFGPSLSDCPAFADGMLKAYHE FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLSALSSTINKFGITKPGRRAFTASYING FT TDWHDVAKDQFRILYKGNGSSSIAGSFRITMKCQFHNPKXVDKEPGPSPGPSPSPQPTP FT SKKYRFIVYTGVPVTRIMAQSTDDAISLYDMPLQRFRYIEDENMNWTNLDSRWYSQNSL FT KAIPMIIVPVPQGEWTVEISMEGYQPTSSTTDPNKDKQDGLIAYNDDLKEGWNVGVYNN FT VEITNNKADNTLKYGHPDMELNSCHFNQGQCLERDGDLTCHVRTTGDNASFFIVGPAVQ FT KQSKYNYAVSYGAWTDRMMEIGMIAIALDEQGSSGSAKIERPKRVGHSMAVSTWETINL FT PEKENSEEFKTDQRQDLKTPPAAGGSSDMLDIVQGGLPLPVEEDIPDSIMDDPWSNIPA FT KSSQEGEAMTSKSGFKPQLKPPGLPKPQPVRTIRNFDPKPDLVEAWRPDVNPGYSKEDV FT AAATVMYGGSVKEGRSMIDKRDKAVLDGRKSWGSSLASSLTGGTLKASAKSEKLAKLTS FT SERAQFERIKRQQGATRASEFLEQLLAGTNPDPRF" FT gene 3598..4206 FT /gene="orf3" FT CDS 3598..4206 FT /codon_start=1 FT /gene="orf3" FT /product="P3" FT /note="major coat protein" FT /db_xref="GOA:Q45GB6" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:Q45GB6" FT /protein_id="AAZ57427.1" FT /translation="MNTVVGRRTINGRRRPRRQTRRAQRSQPVVVVQASRTTQRRPRRR FT RRGNNRTRRTVSTRGTGSSETFVFSKDNLAGSSSGSITFGPSLSDCPAFADGMLKAYHE FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLSALSSTINKFGITKPGRRAFTASYING FT TDWHDVAKDQFRILYKGNGSSSIAGSFRITMKCQFHNPK" FT gene 3629..4156 FT /gene="orf4" FT CDS 3629..4156 FT /codon_start=1 FT /gene="orf4" FT /product="P4" FT /note="putative movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q45GB5" FT /protein_id="AAZ57428.1" FT /translation="MEEDDHVGKRDALSALSQWLWSKPLGQHNADLDDDEEAITGQEEL FT FLPEEQVRARHLFSQKTISREVPADQSRSGRVYQTARHSLMECSRPTMSIKSQWSFWSS FT SPKPLPKIPVPSLTSWTHTVNSVPFHQLSTSSGLQSPGGGHLQRLTSTGRTGTTLPRTN FT SGSSTKAMVLHR" XX SQ Sequence 5723 BP; 1622 A; 1378 C; 1362 G; 1361 T; 0 other; acaaaagaaa ccagcgagga tctagcagtc gatgcaattt caactcaaaa caaatagttt 60 cacttgttcg ttgaaccgac cgctaacagc tacagagcga gtttgcaaca ccgcgtattt 120 tctcacgcat catctaccgc tcataacttt cgagaatgaa aactgcattc gttctcttct 180 cgctgctctg cctttgctgc ttagtaagca gctcgaccct gggagcctcg tttacactcc 240 cgggaaacgc cagtctttac gactggcccg gttctacaat tactgcggaa ccgctttgcc 300 cagcactcgc aacgttgact tacgagtgcc ccccagaaaa gacgttaaaa gattttacct 360 tgcccgaaat tcaggcagaa atctggggga gaggctacaa cgccgtggag aaattttctt 420 tcacggtgaa gcagagttta aaaagttcct ttcagtatgg tgtgctgaaa gcgaaagaaa 480 attacgggag agccctaaga tcaacattaa aatggatcgt attattatgg tcttacgtga 540 tatgggcact ctcttgcacc gcctggtatt tgttgaagaa ctataccata gaaatactta 600 tgctgagctc gctttttgcg ttcaccacct ttttggtgaa gctcgcggta tggatttttg 660 gcggttggct aacttccctg gtaaatggtt tatttgctct cacgaaacgt atcttgaaaa 720 ctctttcatc cagaaagagc tacgtttgtg agcggtctgt gaaaggtttt ctcaccttta 780 ccatcaagca aagcccgccg cgtaattgca ttcttcaaat acaacatgca gacggttccc 840 atgccggtta tgcaacatgc gtaaccttat tcgacgggac taacggattg ttgactgcgc 900 aacacgtagt tgacgatttt tacgaaggag acccgaaaaa gactctaaaa gtcgtctcca 960 cccgcaatgg aaacaaaatc ccccttgatg aattcagagt gacgtacaca tctgagaaaa 1020 gggatcaatt gttgatgcat gggcccccaa actgggaagg agttcttgcc tgtaaggcag 1080 ttcacatgat tccggcatcg agtgttgcaa aatcgaaagc aactttcttt gctctgtcgg 1140 atggtgaatg gcattcctct aatgccgagc tcgttggcac atccaagtgc ggaaaattca 1200 tttctgtact cagtgacaca aagagtggtc attcaggcac tccctatttc aatggtaaga 1260 gtgttcttgg agttcacata ggttctccga aagaatttga gtcagaaaat gtgaattaca 1320 tgtctcctat accacgtttt cctggattaa ccagcccgaa ctacatattt gaaaccacag 1380 cccttgctgg aaaatttttc agtcaagagg aagtcgaaga gctaatggaa gatttctctc 1440 tccaagagat ttattctata gcgacggcac gtgggaagta tataaaatat gaggcttgtc 1500 cagatgaaga gacatttcat gatgtgctaa cagagtcctc cccgatgcag ggggaaggaa 1560 gggcggctcc gaccgccgga acaaccggaa acgcaagcac ccacgagaga tccgcaggaa 1620 atggaaaaag ccctcgtgct gctccttcta caccgcggga accctcggtg aaaactgcac 1680 cgcaagccac gtacattgca cctcaaaaga ggaatatgac gaatggccga gatgctggtg 1740 ccaaattgca ggccacgact gccactaccg atcaaatctc agagataaag aaggctctga 1800 tagacaaaat ggatttgaaa tcgatcgaga gacaagtggt agagacacta tcgtcgatgg 1860 ccatgaagaa gccccgctca agagggcgga gaagatccaa gaacaagcaa aacaatttgg 1920 atgcttcttc aaaacccagt accactggga aagagccgca gaagtctgcc ccggtttcat 1980 caaagtcggt gagctcccca agttttactt ctctaaacaa aaaggatgct cggattgggg 2040 cacgaagctc accagcctcc acccagaatt ggaggagaaa acccgaggct tcgggtggcc 2100 caagttcggg ccagcggcgg aattgaaatc cttgcggcta caagccgcaa gatggctcga 2160 acgcgccgag caagttaaaa tcccttcgac tgaggaaagg gagcgcgtca tagagaaatg 2220 tgtggaagca ttctcgccta ctcaaacacg aggtcccatg gccacaagag gaagcaaact 2280 gtcttggaac aatttccttg aagattttaa aacggcagtc ttctctttag agctcgaagc 2340 cggcgtaggc gtcccgtatg ttgcttacgg tcgacgcacg catagaggct ggattgaaga 2400 tccagatctg ttgccggttt tagctcgttt cacctttgat cgattacaga agttatcgga 2460 ggcgaaattt gagcatatga gccctgaaca actggttcag gaaggcctgt gtgacccaat 2520 acggttattc gtaaaaggcg agccacacaa acaatccaaa cttgatgagg gacgctaccg 2580 cctcatcatg agtgtctcat tggttgatca actggtagcc cgggttctgt ttcaaaatca 2640 gaacaagcgc gagattgcgc tctggagggc gattccctca aaacccggtt tcggattgtc 2700 cacggacgga caagtcgtcg atttcatgca agcattatcg gcgcaggtgg gagtgaatac 2760 tgctgaatta ctccaagatt ggaaatccca cctcattcct acagattgct ccggttttga 2820 ctggagcgtt tcggactggc ttctagaaga tgaaatggaa gttcgaaaca ggctcacgtt 2880 ggatataaat gatctaacca ggcgattgcg agctggatgg cttaaatgcc tcgcaaacag 2940 cgtcctctgt ttatcagatg gaacattgct ctcgcagcaa gtacctggtg tgcaaaagag 3000 tggcagctac aacacctcct cgtctaattc tagaattcga gtgatggctg cttaccactc 3060 cggagcctcc tgggccatcg ccatgggtga tgatgccctt gaatctgtag atgcagacct 3120 aagtcgatac tcatccttag gtttcaaagt cgaggtttct tcacaactgg aattctgctc 3180 tcatattttt gaggaggaga acctcgccgt tccggtcaac aaagctaaaa tgctttataa 3240 attgatacat gggtacgaac cggaatgtgg caacttagaa gttctgacga attatcttgc 3300 ggcttgtttc tcaatcttga acgagctgag atctgatcca gaactcgttg cccccctcta 3360 tcagtggctg gtccttccag tgcagccaca aaagatataa cgagggataa cataaacagc 3420 cgggtaaaca tcagttgcaa acgccggaag tttaaagtct gattacataa caagccaaaa 3480 tagatttcaa gtttttagca ggattttcaa gtggtctatt gtcagcaata cctgtaacgg 3540 taattggctt gtacttcgtc tacctgaaga tttcccacca cgttagatca atcgttaatg 3600 aatacggtcg tgggtaggag aacaatcaat ggaagaagac gaccacgtag gcaaacgcga 3660 cgcgctcagc gctctcagcc agtggttgtg gtccaagcct ctcggacaac acaacgccga 3720 cctcgacgac gacgaagagg caataaccgg acaagaagaa ctgtttctac cagaggaaca 3780 ggttcgagcg agacatttgt tttctcaaaa gacaatctcg cgggaagttc cagcggatca 3840 atcacgttcg ggccgagtct atcagactgc ccggcattcg ctgatggaat gctcaaggcc 3900 taccatgagt ataaaatctc aatggtcatt ttggagttcg tctccgaagc ctcttcccaa 3960 aattccggtt ccatcgctta cgagctggac ccacactgta aactcagtgc cctttcatca 4020 actatcaaca agttcgggat tacaaagccc gggaggaggg catttacagc gtcttacatc 4080 aacgggacgg actggcacga cgttgccaag gaccaattca ggatcctcta caaaggcaat 4140 ggttcttcat cgatagctgg ttcttttaga atcaccatga agtgtcagtt ccacaatccc 4200 aaataggtag acaaggaacc cggccctagc ccagggcctt ctccctctcc acaacccaca 4260 ccctcaaaga aatatcgttt catcgtctat actggtgtcc cagtgacccg tataatggcc 4320 caatctactg acgacgccat ttctctgtac gacatgccct tacagcggtt tcgctacata 4380 gaagacgaga atatgaactg gacgaacctc gattctcgat ggtattccca gaactctttg 4440 aaagccatcc caatgataat agtaccagtc cctcaaggtg agtggactgt ggaaatttcg 4500 atggaggggt atcaaccaac ctcaagcact acagatccta ataaggacaa acaagatggt 4560 ctcattgcat acaatgatga cctcaaggag ggttggaatg tgggggttta taacaatgtg 4620 gagataacca ataataaggc cgataatact ttgaagtacg gccatccaga catggagctc 4680 aatagttgtc atttcaatca aggacaatgt ttggaaagag atggagattt gacttgtcac 4740 gttagaacaa ctggtgacaa cgcctccttc tttattgttg gtcccgctgt ccagaagcaa 4800 tccaaataca attatgccgt ttcatacgga gcttggacag atcggatgat ggagataggg 4860 atgatagcca tagcacttga tgaacaaggc tcatccggtt ccgcaaagat agaaagacca 4920 aagagagtcg ggcactccat ggcagtctca acctgggaga ctataaactt accggagaag 4980 gaaaactccg aggaattcaa aaccgatcaa agacaagatc tcaaaactcc tcccgcagct 5040 ggcgggagtt ccgatatgct ggatatcgtt caaggaggct taccccttcc tgttgaagaa 5100 gacatccctg attctatcat ggatgaccct tggtccaata taccggccaa gagttcgcag 5160 gaaggtgagg ctatgacatc aaagagcggt tttaaacccc aattgaagcc tcctggcctg 5220 ccgaaaccac aaccggttag gacgatccga aatttcgatc caaaaccgga cttagttgag 5280 gcatggcgac ccgacgtgaa ccccggatat tccaaagaag atgtggcagc ggccactgtc 5340 atgtacgggg gttccgttaa agaaggccga tctatgattg acaagcgtga taaagctgtg 5400 ttagacggcc gcaagagttg gggttcttcc ttagcgtcct ccttaacggg aggaacgctt 5460 aaggcctctg caaagtcaga gaagcttgcc aaactcactt cgagtgaaag ggcgcaattc 5520 gaacgaatta agcgccagca aggtgccaca cgagcttcag agttcttaga acaacttctg 5580 gctggcacaa accctgaccc aaggttctga tgaacctttc caaatcatca cagtcaagcc 5640 cgtgacttta aacgtggaac gactccgaaa ggataggcaa cgagtgtttt acgctgggat 5700 aactccctac ggcacttcgg tgt 5723 //