ID DQ125333; SV 1; linear; mRNA; STD; VRL; 7437 BP. XX AC DQ125333; XX DT 06-JAN-2006 (Rel. 86, Created) DT 26-AUG-2006 (Rel. 88, Last updated, Version 2) XX DE Sapovirus Hu/Angelholm/SW278/2004/SE polyprotein mRNA, complete cds; and DE unknown genes. XX KW . XX OS Sapovirus Hu/Angelholm/SW278/2004/SE OC Viruses; Riboviria; Caliciviridae; Sapovirus. XX RN [1] RP 1-7437 RX PUBMED; 16485479. RA Hansman G.S., Takeda N., Oka T., Oseto M., Hedlund K.O., Katayama K.; RT "Intergenogroup recombination in sapoviruses"; RL Emerg. Infect. Dis. 11(12):1916-1920(2005). XX RN [2] RP 1-7437 RA Hansman G.; RT ; RL Submitted (13-JUL-2005) to the INSDC. RL Department of Virology, National Institute of Infectious Diseases, 4-7-1 RL Gakuen, Musashi-murayama, Tokyo 208-0011, Japan XX DR MD5; 3a63d90bcf1177a468e0c572b991953e. DR EuropePMC; PMC1865854; 17267629. DR EuropePMC; PMC1933329; 17459935. DR EuropePMC; PMC2600344; 18598655. DR EuropePMC; PMC2725984; 17553282. DR EuropePMC; PMC2744225; 19624925. DR EuropePMC; PMC2851512; 18258001. DR EuropePMC; PMC3291391; 16494732. DR EuropePMC; PMC3321905; 20587209. DR EuropePMC; PMC3367643; 16485479. DR EuropePMC; PMC3433708; 22973264. DR EuropePMC; PMC4498750; 26161646. XX FH Key Location/Qualifiers FH FT source 1..7437 FT /organism="Sapovirus Hu/Angelholm/SW278/2004/SE" FT /mol_type="mRNA" FT /country="Sweden:Solna" FT /db_xref="taxon:343513" FT CDS 14..6829 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF1" FT /db_xref="GOA:Q2N2K9" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:Q2N2K9" FT /protein_id="ABA00798.1" FT /translation="MASKPFYPISFNRKVEYSVLRSAHLRVSGREQMFETLAELDSHVE FT TVVAGLWRDNLRRSLVATPTFTEEGLLDSFLSKPPVDINPDTTFRELFGVDPHEQFPLS FT IHDLAKLQGELVEAARNPGHILRRHYSTDSLTALINKITKFVPVQATLQEMQARRAFER FT ERADLFKELPHVEPDVGHQQKSYFYAMWRQVVKKGKEFFIPLVKCTSWRKKFTEPAEII FT RQVLVHFCEGMRSQFSTNANYINLSLIAKMRPTVLTMIFQQHKNTYRGWLATVTALIEV FT YSNLFQDMRDTAVSAVSAVTLVFETIKDFINNVIDLVKSTFRAQGPTPCGWAAIAAGAL FT LILMKLSGCSNTASYWHRLLKVCGGVTTLAAAARAVVWVRDIIMEADGKSRLKKYMART FT AALLELAASRDVNGTDELKRLLDCFTQLIEEGTELIQEFGTSPLAGLARSYVSELESAA FT NSIRSTILLDTPRKTPVAIILTGPPGIGKTRLAQHLAAGFGKVSNFSVTLDHHDSYTGN FT EVAIWDEFDVDTQGKFVETMIGIVNTAPYPLNCDRVENKGKVFTSDYVICTSNYPTSVL FT PENPRAGAFYRRVITVDVSSPSIDDWKKRNPGKKPPVDLYKGDFSHLRLSVRPFLGYNP FT EGDTLDGVRVKPTTTSVDGLSRLMETKFKEQGNEQRNIWITCPRDLVAPAASGLKSYMA FT ANRALAQVFQEPSSQDIGETCTSRVYVSCNNPPPTFVGRIVKITAINPWDASLANSMLS FT MFETSTHIPASVQREIMYRVWDPLVHLQSREPNTQMLPYINRVVPVATAFDFIRGLRHH FT LGLCSIKGMWRAYQGWTSSNSILEFLSKHMADVNFPHNPECTVFRAPDGDVIFYTFGSY FT ACFVSPARVPFVGDPPKNVHSNITRNMTWVETLRLLAETVTECLAHFGPFLLMLHNVSY FT LTARSSRDEEAKGKTKHGRGAKHSRRGGVSLSDDEYDEWRDLVRDWRQDMTVSEFVELR FT ERFALGMDSEDVQRYRAWLELRAMRMGAGAYQHATIIGRGGVQDTIIRTQPMRAPRAPR FT SQGYDEEAPTPIVVFTSGDEHIGYGCHLGNGVVVTVTHVASAADQVEGQEFTIRKTEGE FT TTWVNTNLGHLPHYQLGDGAPVYYSARLHPVTTIAEGTYETPNITVQGYHLRILNGYPT FT KRGDCGTPYFDACRRLVGLHAATSTNGETKLAQRVTKTSRVENAFAWKGLAVIRGPDCG FT GMPTGTRYHRSPAWPEIIEGETHAPAPFGSGDSRYSFSQVEMLVNGLKPYSEPTPGIPP FT ALLQRAATHTRTYLETIIGTHRSPNLTFGEACALLERTTSCGPFVAGQKGDYWDEDKQC FT YTGVLADHLAKAWDAANRGVAPQNAYKLALKDELRPIDKNAQGKRRLLWGCDAGATLVA FT TAAFKGVATRLQAVAPMTPVGVGINMDSYQVEVLNESLKGGVLYCLDYSKWDSTQHPAV FT TASSLSILERLSEATPITTSAVELLSSPARGHLNDIIFVTKSGLPSGMPFTSVINSLNH FT MTYFAAAVLRAYEQHGAPYTGNVFQVETVHTYGDDCLYSVCPATASIFHSVLANLTSFG FT LKPTAADKSECIAPTHTPVFLKRTLTCTPRGVRGLLDISSIKRQFLWIKANRTTDINSP FT PAYDREARSVQLENALAYASQHGHSVFEEVAKLARHTAKAEGLVLTNVNYDQALATYES FT WFIGGAGLVQDGPSEETTKLVFEMEGNGLPQAGQQQALDVPGTTGPTSSAVVVANPDQP FT SAQAQRMELAVATGAVSSNVPDAVRQCFALLRTFPWNTRQATGTYLGSAALSPALNPYT FT AHLSAMWAGWGGSMEARVTISGSGTFAGKIIVALLPPGLDPTRVRDPGVLPHAQVDARA FT VDPITFNINDVRAVDYHRTDGQEATSTLGFWVLQPLINPFSHDALSTAWVSVETRPGPD FT FDFCLLKPPQMEMENGLSPSTLLPRHLGRSRGNRCGGFIVGMAVVAMAHQVNHHFSTAA FT TTYGWSTLPLGPCAAKITSSLPGEINNYTGFADVGGAGEGPIIPNIPNHWPDSCASSVI FT ATWDGSLHRPNLGISGSIMTFDNHGDADEAQITGAMAATVDPSPSRRTQLQGSFTANTM FT RIMRTSGLDKIGEVNKNVYFIPILLDGATGYINEKVTNLADINISYGPVGPNNVILWRE FT RVFSSHPRPGILYSSQLESTASIFQDGPVNIPNNYMAVFNVSDTGADFQIGICPDGYMR FT TGSPVGTVVDLTPECTFTFVGLFPFTSPLNGPHGTGRGRSVYQ" FT CDS 5184..5669 FT /codon_start=1 FT /product="unknown" FT /note="ORF3" FT /db_xref="InterPro:IPR009949" FT /db_xref="UniProtKB/TrEMBL:Q2N2K8" FT /protein_id="ABA00800.1" FT /translation="MAYPRLDNSKLLTCQEQLARLRRQWWWQILTNLLPRPNAWSWLLQ FT PVPCHQMSRMQCVSALHSFAHFLGTLDRPQALIWDLLRCPQLSTHTPRIFRRCGQGGVV FT AWRRVSPFLVLAPLLVKLLLPYCPRGWTQRVCVILEFCPTPRLTLALWILSHLTSTM" FT CDS 6826..7329 FT /codon_start=1 FT /product="unknown" FT /note="ORF2" FT /db_xref="InterPro:IPR008437" FT /db_xref="UniProtKB/TrEMBL:Q2N2K7" FT /protein_id="ABA00799.1" FT /translation="MSWLVGALQLGGALVDAAGSVSNMVYQHKQLELLKQQNQLYSTWM FT AKNEQLQRDSMALSEKLSTEGPALRVKAALDAGFDPVSARRLAGSGERRIQGYIDMPIM FT TQQQSSAHWVNGNLTKVNSALTTFQQGTPFGKPQPPKFQTGGPNIGNNRPAVNIGHNPG FT SSSA" XX SQ Sequence 7437 BP; 1748 A; 2074 C; 1888 G; 1727 T; 0 other; gtgattggtt agtatggctt ctaagccatt ctaccctatt tcattcaacc gtaaggttga 60 gtattcagtg ctcagatcgg ctcacctcag ggtgagtggt cgtgagcaaa tgtttgagac 120 tctagcagaa ttagatagtc atgttgagac agtggttgcc ggactgtggc gtgataattt 180 gcgccgcagt ctggtagcga cccccacctt cactgaggag gggttgttag actccttcct 240 atcaaaacca cccgtggaca tcaacccaga cacgacgttt cgtgaattat ttggagttga 300 ccctcacgaa cagttcccct tgtccattca tgatctggcc aagttacaag gcgagcttgt 360 ggaggcggcg cgcaatcctg gtcacatatt gcggcgtcat tactccaccg attcgctcac 420 cgccctaatt aacaaaataa caaaatttgt ccccgtccaa gcaaccctac aagaaatgca 480 agctcgacgt gcatttgagc gtgaacgagc ggaccttttc aaggagctgc cacacgtcga 540 accagacgtt ggtcaccagc agaagtccta cttctatgca atgtggcggc aggtggtgaa 600 gaagggaaag gagttcttta taccccttgt taagtgcacc tcatggcgga aaaagtttac 660 tgaacctgcc gaaatcatac gacaagtgct ggtccacttt tgcgagggaa tgcgttcgca 720 attttccacg aatgcgaact acatcaactt gtcgctcatc gcaaagatgc gaccgaccgt 780 tttgaccatg atcttccaac aacacaagaa cacataccgt ggctggctag caacagtcac 840 cgctctgatt gaggtgtact ccaacttgtt ccaggacatg agggacactg cggtgtccgc 900 agtatctgcg gtcaccctcg tgtttgaaac aatcaaggat tttatcaaca acgtcattga 960 cttggttaag tccacctttc gagcacaagg cccaacacca tgtgggtggg cggccatagc 1020 cgctggtgcg ctgctcatct taatgaagct ttcaggatgc tctaacacag ccagctactg 1080 gcacaggttg cttaaggtgt gtggtggagt caccactctt gctgcggcgg ctcgcgctgt 1140 ggtttgggtt cgtgacataa tcatggaagc tgatggcaag tcccggctca agaagtacat 1200 ggcccggacc gcagccttgc tggagcttgc agcctccaga gatgtcaatg gcaccgatga 1260 gctaaagcgg ttactggact gcttcacaca gcttatcgag gaagggacag agctgattca 1320 ggagttcgga acatcaccac tggctggcct tgcccgctcg tacgtcagtg agctggagtc 1380 ggctgctaat agcatcagaa gcaccatttt gcttgacacc ccacgcaaga cccccgttgc 1440 cattatcctc actggccctc caggcatagg caaaactagg ttggcacaac acctcgcggc 1500 tgggtttggc aaggtgtcaa atttttctgt gacgcttgac catcatgact cgtacactgg 1560 caacgaggtt gccatctggg acgagtttga tgttgacaca caaggcaagt tcgttgagac 1620 catgattggt attgtcaaca cggcacctta cccactcaac tgcgaccggg tagagaacaa 1680 aggaaaagtg ttcacatctg actatgtcat ctgcactagc aactacccta catctgtcct 1740 cccggagaac ccacgggccg gcgccttcta ccgtcgtgtg atcacggtgg acgtctcatc 1800 accctcaata gatgactgga agaagaggaa ccctggaaag aaacccccag tggacctgta 1860 caagggagac ttctcgcacc tgcgcttgtc agttagaccg tttcttggct acaaccctga 1920 aggagacaca ttggacggcg tgcgggttaa gcccacaacc accagtgttg atgggttgtc 1980 acgcttaatg gagaccaagt ttaaggaaca aggaaatgag caacgcaaca tttggatcac 2040 ctgtccgcgc gatctggtgg cccccgccgc atcaggtctg aaatcctaca tggcagccaa 2100 tcgcgcactt gctcaagtgt ttcaggagcc ctcttcccaa gacattgggg aaacgtgcac 2160 gtcgcgcgtg tacgtttcat gcaacaaccc accacccaca tttgttggac gcattgtaaa 2220 aatcacagcc attaacccat gggacgcctc gttggccaat tcaatgctct caatgtttga 2280 gacttccaca cacataccag catcagtgca gcgtgagatt atgtacaggg tctgggaccc 2340 gttggtccac ctacaatcac gggagcccaa cacacagatg ttaccttaca tcaatcgggt 2400 ggtgcccgtc gccacggctt ttgatttcat acgaggcctc cgacaccatc tcggtctgtg 2460 ctcaatcaaa gggatgtggc gcgcttacca aggctggaca agctcaaatt caatcctcga 2520 gtttttgtca aaacatatgg ctgatgtgaa tttcccccat aaccctgagt gcaccgtgtt 2580 tcgggcccct gatggggatg tcatcttcta cacttttggg tcatatgcat gctttgtgtc 2640 tcccgcccgc gtgccctttg ttggcgatcc ccccaaaaac gttcactcaa acatcacccg 2700 caacatgaca tgggttgaaa ccttgcgctt gcttgctgag acggtgacgg agtgcctggc 2760 gcatttcggc ccgttcttgc tcatgttgca caacgtgtcc tacctcactg cgcggtccag 2820 ccgcgatgag gaagcaaagg gtaaaacaaa acatggccgc ggtgctaagc actcacgcag 2880 ggggggagtc agcctgtctg atgatgagta cgatgagtgg cgagatctag tgcgtgactg 2940 gcgccaagac atgacagtca gcgagttcgt cgagcttcga gagaggttcg cgctcggcat 3000 ggactctgag gatgtgcagc gataccgtgc ctggctcgag ttgagagcaa tgcgcatggg 3060 ggcaggggct taccaacatg ccacaatcat cggcaggggt ggtgtccaag acacgataat 3120 acgcactcaa cccatgcgcg caccacgagc accacgcagt cagggctatg atgaagaagc 3180 acccactcca atagttgtgt tcacttccgg agatgagcac attggttatg gttgccactt 3240 gggcaatggc gtggttgtga ctgtcacgca tgttgcatca gccgcagacc aggtggaagg 3300 ccaggagttc actattagga aaactgaagg ggaaactacc tgggttaaca caaatctcgg 3360 ccacctgccc cattaccaac ttggggacgg tgccccggtc tattactcag cccgcctcca 3420 cccagtgacg acaatagcgg aaggaacata tgaaacaccc aacatcacag tccaggggta 3480 ccatctcagg atccttaatg gttacccaac caagcgcggg gattgcggga caccatattt 3540 cgacgcctgc cgcagactgg tgggtttgca cgccgcgact tccaccaacg gcgagacaaa 3600 gcttgctcaa cgcgtaacta agacatcacg tgttgagaac gcttttgcgt ggaaaggtct 3660 ggcggtcata cgtggtcctg attgcggggg catgcccact ggcactcgtt accaccgctc 3720 tcctgcctgg cctgagataa tcgagggtga gacccacgcc cctgccccat tcgggtctgg 3780 tgactctcgg tattcattct ctcaggtgga aatgctcgtt aatggactca agccttactc 3840 tgaacccaca ccaggtatcc cacctgcctt gctccaaagg gcggcaacac acacacgcac 3900 ctacctggaa actataattg gcacccacag gtcacctaat ttaacttttg gagaagcctg 3960 tgccttgttg gagcgtacaa cttcttgtgg gccttttgtg gccggccaga aaggggacta 4020 ttgggatgaa gacaagcagt gctacactgg tgtgctggca gaccacctcg ctaaggcctg 4080 ggacgccgcc aataggggtg tggcccccca gaatgcatac aagctggcac tcaaggatga 4140 acttcggccc attgacaaga acgcgcaggg caagcgccgg ttgttgtggg gttgtgatgc 4200 cggggccacg ctggtcgcca ctgcagcatt caaaggggtg gccacgcgat tgcaagcggt 4260 tgctcccatg acaccagttg gggttggcat caacatggac agctaccaag ttgaagtgct 4320 taatgaatct ctcaaaggag gggttctcta ctgtctggat tacagtaagt gggactccac 4380 ccagcatcca gcggtcacgg cctcctcatt gtcaatccta gaacggctgt ctgaggccac 4440 cccaatcacc acatccgcgg tggagttgct atcatcccca gcgcgaggcc acttaaacga 4500 cataattttt gtcaccaagt ccgggcttcc atcaggcatg ccattcacca gtgtcatcaa 4560 ttccctcaac cacatgacat attttgccgc ggcagtgttg cgggcctacg agcaacacgg 4620 ggccccctac accggaaatg ttttccaagt tgaaacagta cacacttatg gagatgactg 4680 tttgtattca gtctgtcctg ccacggcctc catcttccac tctgttttgg ccaatctcac 4740 ctcatttgga ctaaagccaa ccgctgcaga caagagtgaa tgcattgccc ccacccacac 4800 gccggtattt cttaaaagaa ccttgacctg cacgcctcgt ggcgtacggg ggctcttgga 4860 catatcctcc attaaaaggc aattcctttg gatcaaggcc aataggacaa ctgacatcaa 4920 ttccccaccg gcatatgacc gggaggcgcg tagtgtccag cttgaaaacg cccttgccta 4980 tgcttcgcag cacggccaca gtgtctttga ggaggttgcc aagctggccc gtcacacggc 5040 caaagctgag gggcttgtgt tgacgaatgt caactacgac caggctctcg ccacctacga 5100 atcctggttc ataggtggtg caggcctggt gcaagatggc cccagtgaag agaccaccaa 5160 attagtgttt gaaatggagg gtaatggcct accccaggct ggacaacagc aagctcttga 5220 cgtgccagga acaactggcc cgacttcgtc ggcagtggtg gtggcaaatc ctgaccaacc 5280 ttctgcccag gcccaacgca tggagctggc tgttgcaacc ggtgccgtgt catcaaatgt 5340 cccggatgca gtgcgtcagt gctttgcact ccttcgcaca tttccttgga acactcgaca 5400 ggccacaggc acttatctgg gatctgctgc gctgtcccca gctctcaacc catacaccgc 5460 gcatctttcg gcgatgtggg cagggtgggg tggtagcatg gaggcgcgtg tcaccatttc 5520 tggttctggc acctttgctg gtaaaattat tgttgcccta ctgcccccgg ggttggaccc 5580 aacgcgtgtg cgtgatcctg gagttttgcc ccacgcccag gttgacgctc gcgctgtgga 5640 tcctatcaca tttaacatca acgatgtgag ggctgtggac taccatcgca ccgatggcca 5700 ggaggccacc agcaccctgg gtttctgggt gttgcaaccc ctcatcaatc cattcagcca 5760 cgatgctttg tccacagcgt gggtatcggt ggaaactaga ccaggacctg attttgactt 5820 ctgcctccta aaacccccac aaatggagat ggagaatggg ctctcaccca gcacgctctt 5880 acccagacat cttggccgtt cccgcggcaa taggtgtggg gggttcattg taggtatggc 5940 tgtagtggcc atggcacacc aggtcaacca ccatttctcc actgcagcca caacctatgg 6000 gtggtccaca cttcccctcg gcccgtgtgc tgcaaagatc actagttctc tccctgggga 6060 aataaacaac tacaccgggt ttgcagatgt tggtggtgcg ggtgagggac caataatacc 6120 taacatccca aatcattggc ccgactcttg tgcctcgtct gtcattgcaa cttgggacgg 6180 ctcacttcac cgcccaaatc ttggcattag tggttcaata atgacctttg acaaccatgg 6240 ggatgcggat gaagcccaaa taaccggggc tatggcagca actgtggacc catcccccag 6300 tcgtagaacc cagctgcaag gtagctttac tgccaacacc atgcgtataa tgcgcacgtc 6360 tggtcttgac aagattggtg aggttaacaa gaatgtgtac tttattccaa tccttcttga 6420 cggggccact gggtacatca atgaaaaagt tacaaacttg gctgatatca acatttcata 6480 tggccctgtt ggtcccaaca atgtcatcct ttggcgcgag cgggtctttt ccagccaccc 6540 tcgaccaggc atcttgtaca gctcccagct tgaatccact gcttccattt ttcaagatgg 6600 gccagtaaac atacccaaca actacatggc agttttcaat gtgagtgaca cgggtgcaga 6660 cttccaaatt ggcatttgcc ctgacgggta catgcgtaca ggatccccag ttggcacagt 6720 tgttgattta acacccgagt gcacttttac ttttgttggt cttttccctt ttacttcccc 6780 tctcaatggg cctcatggga ctgggcgagg cagaagtgtt taccaatgag ttggttggtg 6840 ggagcacttc agcttggcgg tgcgcttgtt gacgctgctg gcagcgtgtc caacatggtg 6900 taccagcaca aacaacttga actccttaaa caacaaaacc aactgtattc aacttggatg 6960 gccaaaaatg aacagctcca acgtgactcc atggcactgt ctgaaaagtt atccacagag 7020 ggccccgctc tccgagtcaa ggctgcacta gacgcgggtt ttgaccccgt cagcgcccgc 7080 cgtttggccg ggtcagggga acgccggatt caggggtaca tagacatgcc tatcatgacc 7140 cagcagcaat catctgcaca ctgggtgaat ggcaatttga ccaaagttaa ttcggcactt 7200 accacattcc agcaaggtac cccttttggc aagccccaac cccccaaatt tcaaacaggt 7260 gggcccaaca ttgggaataa caggccggca gtcaacattg gacacaaccc aggctcatca 7320 tctgcctgac ctaccctctt ttattccttt tctttacttt tcttttcttt tccgactggc 7380 actcacgcgt tcgggagtat aatgccaatt aagcgattgg ctccagtttc ctcttgg 7437 //