ID DQ118372; SV 1; linear; genomic RNA; STD; VRL; 3637 BP. XX AC DQ118372; XX DT 28-AUG-2007 (Rel. 93, Created) DT 02-OCT-2008 (Rel. 97, Last updated, Version 3) XX DE Barley yellow dwarf virus-PAV coat protein and putative movement protein DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-3637 RA Shu R., Malmstrom C.M.; RT ; RL Submitted (06-JUL-2005) to the INSDC. RL Plant Biology, Michigan State University, 166 Plant Biology Bldg, East RL Lansing, MI 48824, USA XX DR MD5; f72eb97ac33f8d1b0d7a6008ec911ced. XX FH Key Location/Qualifiers FH FT source 1..3637 FT /organism="Barley yellow dwarf virus PAV" FT /host="Glyceria elata (University of California Berkeley FT herbarium specimen UC1495301)" FT /isolate="HB3" FT /mol_type="genomic RNA" FT /country="USA:California, Lake Tahoe Basin, Placer County" FT /collection_date="1940" FT /db_xref="taxon:2169986" FT CDS 2165..2767 FT /codon_start=1 FT /product="coat protein" FT /note="translated from subgenomic RNA1; occasional FT read-through of stop codon produces P3-P5 fusion protein; FT ORF3" FT /db_xref="GOA:B3EYA5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B3EYA5" FT /protein_id="AAZ78310.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALASYINSFTISKTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" FT CDS 2208..2669 FT /codon_start=1 FT /product="putative movement protein" FT /note="translated via leaky scanning from subgenomic RNA1; FT ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:I6LFF5" FT /protein_id="AAZ78311.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL FT RPALSLLNSTLRANNQPWLATLIPSQSARPPQRSSEPKRLTGRNSRNQR" XX SQ Sequence 3637 BP; 1113 A; 866 C; 859 G; 791 T; 8 other; gctgctgcca agatcggagc agaaatgttc gcccccgttg acgtgcagga cctctacagt 60 tttacagagg tcaagaaggt ggagaccggc ctcatgaaag aggtcgtgaa agagagaaac 120 ggcgaagaag agaaacacct cgaacccatc atggaagagg tgagatctat caaggatacc 180 accgaagcca gggacgccgc ctccacttgg ataacagaga cagttaagct gaagaactca 240 acgcttaacg cagatgaatt gtctctggcc accatcgccc gctacgttga aaacgtaggg 300 gacaaattca aactcgacat tgctagcaag acatatctaa agcaagtcgc atcgatgtct 360 gtaccaatac caactaacaa ggacatcaaa ttgaagatgg tgctgcagag tcctgaagca 420 cgtgccaggc gggaacgcat ggacgtgctt gactctgtgg gtttttagag gggctctgta 480 ccgcctctgg ttttgagagc ccattcccca ttctcgggct gccagagatt gcggtcacag 540 acggagcccg actccgtaag gttagtagta atattagata ccttagccaa acccacctag 600 gtcttgtata taaggcacca aatgcctccc tgcacaatgc gcttgtagca gtggagagaa 660 gagtttttac agtaggaaag ggggacaaag caatctaccc cccccgccca gagcatgaca 720 ttttcactga tacaatggat cacttccaaa aatccattat agaagaggtg ggatactgta 780 gaacatatcc agcgcaactc ctggctaaca gctatagcgc aggaaagagg gccatgtatc 840 gcaatgccat tgcatcattg aagactgtcc cttatcatca gaaggatgcc aatgtgcaag 900 ctttcctgaa gaaggaaaaa cattggatga ccaaggacat cgccccccga ctgatttgcc 960 cccgcagcaa gcggtacaac atcatcctag gaactcgttt gaaattcaac gagaagaaga 1020 tcatgcacgc tatcgatagt gtgttcggat cccccactgt gctttctggc tatgacaact 1080 ttaaacaagg aagaatcata gccaagaagt ggcaaaagtt tgcatgcccc gtcgccatcg 1140 gcgtggatgc tagccgcttt gaccaacacg tgtcagagca ggcgcttaag tgggaacacg 1200 ggatatacaa tgggatcttc ggagacagcg aactggctct tgcacttgaa caccaaatca 1260 ccaacaacat caagatgttt gttgaagata aaatgattag gttcaaggta agaggccaca 1320 gaatgtccgg tgacattaat accagcatgg gaaataagct cataatgtgc ggcatgatgc 1380 atgcatattt caagaagctg ggtgttgaag ctgaactttg taacaacgga gacgactgtg 1440 tcatcatcac tgatagagcc aatgagaagc tctttgatgg catgtacgac catttcctcc 1500 agtatggctt caacatggtg accgaaaaac cagtttacga actggagcaa ttggagtttt 1560 gccagtcaaa accggtctct attaatggaa agtatagaat ggtcagaagg cccgatagca 1620 taggcaaaga tagcacaaca ctactgagca tgctcaatca atccgacgtc aagagctaca 1680 tgtcggctgt tgctcagtgt ggcctggtgc tcaacgctgg agtacccata cttgaaagtt 1740 tctataaatg cttatataga agctcggggt acaagaaagt gagtgaggaa tttattaaaa 1800 acgtcatatc gtatggaaca gatgagagac tacaaggtag acgtacctac aatgaaacac 1860 ctatcacaaa ccacagtaga atgtcctact gggaatcatt cggagttgac cctaagatac 1920 agcaaatcgt cgagaggtac tacgacggtc ttacggtaag tgcccaactc cagagcgtga 1980 aggtgacgac tccacatctg caatcaatac tactttccat accggaaaac cactcactaa 2040 acgaatatta attaccaaat cttagctggg tttgggatag ggttcatagt tagtataccc 2100 tgtacattag ctctcgcgta ctttatttat aataaagttt cagacaccac tagagaggtg 2160 gtgaatgaat tcagtaggcc gtagaggacc tagacgcgca aatcaaaatg gcacaagaag 2220 gaggcgccgt agaacagttc ggccagtggt tgtggtccaa cccaatcgag caggacccag 2280 acgacgaaat ggtcgacgca agggaagagg aggggcaaat cctgtattta gaccaacagg 2340 cgggactgag gtattcgtat tctcagtcga caaccttaaa gccaactctt ccggggcaat 2400 caaattcggc cccagtctat cgcaatgccc agcgctttca gacggaatac ttaagtccta 2460 ccaccgttac aagatcacaa gtatccgtgt tgagtttaag tcacacgcgt ccgcaactac 2520 ggccggcgct atctttattg aactcgacac tgcgtgcaaa caatcagccc tggctagcta 2580 cattaattcc ttcacaatca gcaagaccgc ctcaaaggtc ttcagagccg aagcgattaa 2640 cgggaaggaa ttccaggaat caacgataga ccagttttgg atgctctaca aggccaatgg 2700 aaccaccact gacacggcag gacaattcat tatcacgatg agtgtcagtt tgatgacggc 2760 caaataggta gactcctcaa caccggaacc gaaacytgca ccagaaccta caccagcccc 2820 acagccaacg ccagctccac agcccgcacc cgaaccgact cctgcaccag tccccaaaag 2880 attctttgag tatatcggca ctccaaccgg tacaatctca acaagagaga actctgacag 2940 tatttctgtc agcaagctcg gtgggcagtc gatgcagtac atagagaatg agaagtgtga 3000 aacaaaggtc attgactcct tctggagcac taacaacaac gtgtctgcac aggcagcctt 3060 cgtttaccca gtgccagaag gatcatacag tgtgaacatt tcgtgcgaag gctttcaatc 3120 cgttgaccac ataggaggca acgaggatgg ttattggatt ggtttaattg cctactccaa 3180 ttcgtcagga gacaattggg gggtaggcaa ctacaaaggg tgcagtttca agaacttctt 3240 ggcaaccaat acttggagac caggccataa ggatctcaag ttgaacgatt gccagttcac 3300 agatggacaa atagttgaga gggatgccgt gwtgtctttc catgtggaag caacaggtac 3360 tgacgcctgt ttytawmkca tggctcccaa aacaatgaaa actgacaaat wcaamtatgt 3420 tgtctcatat ggagggtaca caaacaaacg gatggaattt ggtaccatat ctgtgacatg 3480 tgatgaatcc gatgttgagg cagaacgcac aacaaggcac gctgaaacac ccatacgttc 3540 caaacacatt cttgtgtccg aacagtacga gcaaccttta cccaccataa tcgatcaagg 3600 cttgtgtgat gtgcaaactc ccgagcaaga acaaaca 3637 //