ID DQ116885; SV 1; circular; genomic DNA; STD; VRL; 2740 BP. XX AC DQ116885; XX DT 31-JUL-2006 (Rel. 88, Created) DT 31-JUL-2006 (Rel. 88, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus - [Pakistan:Solanum] isolate Rahim Yar DE Khan 2 clone PT6 segment A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus [Pakistan:Solanum:1997] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RA Tsai W.-S., Green S.K., Behjatnia S.A.A., Rezaian A., Iram S., Mansoor; RT ; RL Submitted (04-JUL-2005) to the INSDC. RL Virology, Asian Vegetable Research and Development Center - The World RL Vegetable Center, P.O. Box 42, Shanhua, Taian, Taiwan 741, Republic of RL China XX DR MD5; b0362d8d90fce18ea66c16e3fa2d86ea. DR EuropePMC; PMC3120783; 21496256. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Tomato leaf curl New Delhi virus FT [Pakistan:Solanum:1997]" FT /segment="A" FT /isolate="Rahim Yar Khan 2" FT /mol_type="genomic DNA" FT /country="Pakistan:Rahim Yar Khan" FT /isolation_source="tomato" FT /clone="PT6" FT /db_xref="taxon:407834" FT CDS 41..427 FT /codon_start=1 FT /product="V3" FT /db_xref="UniProtKB/TrEMBL:Q0R4R1" FT /protein_id="ABB52058.1" FT /translation="MKFTLHGLFSAWGPINRLAHQVWIHKHVGSIIARISRKRSWSEVH FT ASCKISPRDRKELFPRHSRLRSCPRSHSCSSGKELWRSDQQISSFQRPHRRYADVSTST FT APMELVQLSPLPASQKQRPGPTGR" FT CDS 120..458 FT /codon_start=1 FT /product="V2" FT /note="precoat protein" FT /db_xref="GOA:Q0R4R0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q0R4R0" FT /protein_id="ABB52059.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT CDS 280..1050 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:Q0R4Q9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q0R4Q9" FT /protein_id="ABB52054.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYACKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(310..672) FT /codon_start=1 FT /product="C5" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:Q0R4Q8" FT /protein_id="ABB52057.1" FT /translation="MVFCLDVFIHPYLPQHIHGFHTESLPYAMCESSPSGNITNTHDFA FT NMRYIVPRFKRLHLTRAFTAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSS FT IGAVEVETSAYLRCGR" FT CDS complement(1047..1457) FT /codon_start=1 FT /product="C3" FT /note="replication enhancer protein" FT /db_xref="GOA:Q0R4Q7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q0R4Q7" FT /protein_id="ABB52055.1" FT /translation="MIMDSRTGEYFTAHQAESGVFIWEVPNPLYFKILKHDSRPFLTNH FT DIIKVQIQFNHNLRKALGLHKCFLTFQIWTGLRPPTGIFLRVFRTQVLRYLNMLGVVGI FT YNVIRAVYHVLDNVLEKTIDVWTSYDIKLDIY" FT CDS complement(1192..1596) FT /codon_start=1 FT /product="C2" FT /note="transcription activator protein" FT /db_xref="GOA:Q0R4Q6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q0R4Q6" FT /protein_id="ABB52056.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKNIRRRRVDLQCGCSYYISIN FT CHDHGFTHRGVLHRASSREWRLYLGGSKSPVFQNIETRQPTIPHQPRHNQSTDTVQPQP FT AESSGTSQVFSNFPNLDGLTPSDWDFLEGF" FT CDS complement(1499..2584) FT /codon_start=1 FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:Q0R4Q5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q0R4Q5" FT /protein_id="ABB52053.1" FT /translation="MAPPSRFRINAKNYFLTYPKCSLTKEEALSQLQTLETPTTKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKKYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFH FT NLVTNLDRIFQPRSEVYVSPFSISSFDRVPPELVDWVSSNVVCAAARPLRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPTEEEEEHTQEAS" XX SQ Sequence 2740 BP; 745 A; 584 C; 614 G; 797 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattca cgctacatgg 60 cttatttagt gcgtggggac caataaatag acttgctcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtctgagg tgcatgctag 180 ctgtaaaata tctccaagag atagaaaaga actattcccc agacacagtc ggctacgatc 240 ttgtccgaga tctcattctt gttcttcggg caaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgc atcgaaggta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtctttt gaatctaggc acgatgtatc tcatattggc 540 aaagtcatgt gtgttagtga tgttacccga gggactggac tcacacatcg cgtagggaag 600 cgattctgtg tgaaatccgt gtatgtgctg gggaagatat ggatggatga aaacatcaag 660 acaaaaaacc atactaacag tgtcatgttt tttttagttc gtgaccgtcg tcctacagga 720 gctccccagg atttcgggga agtttttaat atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgga agtggcatgc gactgtgacg 840 ggaggaacat atgcatgtaa ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgttgttt ataatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctatttct atgattcggt cacaaattaa taaatatcga gctttatatc atatgaagtc 1080 catacatcaa ttgttttttc taatacattg tccaatacat gataaactgc tcttattaca 1140 ttataaattc caactacacc cagcatattt aggtaccgaa ggacctgcgt tctaaaaacc 1200 ctcaagaaaa tcccagtcgg agggcgtaag cccgtccaga tttggaaagt tagaaaacac 1260 ttgtgaagtc ccagagcttt ccgcaggttg tggttgaact gtatctgtac tttgattatg 1320 tcgtggttgg tgaggaatgg tcggctgtcg tgtttcaata ttttgaaata caggggattt 1380 ggaacctccc agataaagac gccactctct gcttgatgcg cggtgaagta ctccccggtg 1440 cgtgaatcca tgatcatggc agttgatcga tatgtaatac gaacaaccac actgcagatc 1500 aactcgcctc ctgcgtatgt tcttcttctt cttctgtggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctgcgttttt ttcttcgtcc agatattcct tataactgct gtttggacct ttattgcaca 1680 ggaagatagt gggaatgcca cctttaatca tgactggctt tccgtacttg gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaaatgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtaccag gcatcattgc tatatacttt tgggctcaga tcaagatgtc 1860 cacacaagta attgtggggt cctaaacaac gagcccacat tgttttgccc gttctactat 1920 ccccctctat gactatgctt atgggcctta aaggccgcgc agcggcacac accacattgg 1980 acgacaccca atcgacgagt tctggcggaa ctctgtcgaa ggaagaaata gaaaatggag 2040 aaacataaac ctcagaacga ggttgaaaaa tgcgatctaa atttgtaact aaattgtgaa 2100 actgcaaaac gtaatccttt ggtgctaatt ctttcaatac ttttaacgca tcctctttgt 2160 ttcctgtgtt aattgcctga gcatatgcat cgtttgccgt ctgttgacct ccacgagcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaacatc tccgtctttg tcgatgtatt 2280 tcttgacatc tgacgctgat ttagctccct gaatgtttgg atggaaatgt gctgaccgac 2340 ttggggacac caagtcgaag aatctgttgt ttttgcactg gaacttccct tcgaactgga 2400 tgagaacatg gatatgcgga gacccatcct cgtgaagctc tcgacagatc ttgatgaatt 2460 tcttcgtagt tggggtttct agggtttgca attgggaaag tgcctcttcc tttgtaagag 2520 agcactttgg atatgttagg aaatagtttt ttgcatttat tctaaaacga cttggcggag 2580 ccataaacct tgtcgtttcg atctggtgtc tctcaacttt gtctatgtaa ttggtgtctg 2640 gagtcctata tataggtaag acaccatatg gcagaattgt aatttttaca ataaaattac 2700 tttaattcaa attccctaaa gcggccattc gtataatatt 2740 //