ID DQ116884; SV 1; circular; genomic DNA; STD; VRL; 2759 BP. XX AC DQ116884; XX DT 31-JUL-2006 (Rel. 88, Created) DT 16-FEB-2018 (Rel. 135, Last updated, Version 2) XX DE Pedilanthus leaf curl virus isolate Rahim Yar Khan 1 segment A, complete DE sequence. XX KW . XX OS Pedilanthus leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2759 RA Tsai W.-S., Green S.K., Behjatnia S.A.A., Rezaian A., Iram S., Mansoor; RT ; RL Submitted (04-JUL-2005) to the INSDC. RL Virology, Asian Vegetable Research and Development Center - The World RL Vegetable Center, P.O. Box 42, Shanhua, Taian, Taiwan 741, Republic of RL China XX DR MD5; c576dcf4623c0cb65f250844250a01d4. DR EuropePMC; PMC3002923; 21092241. XX FH Key Location/Qualifiers FH FT source 1..2759 FT /organism="Pedilanthus leaf curl virus" FT /segment="A" FT /isolate="Rahim Yar Khan 1" FT /mol_type="genomic DNA" FT /country="Pakistan:Rahim Yar Khan" FT /isolation_source="tomato" FT /clone="PT7" FT /db_xref="taxon:619631" FT CDS 97..501 FT /codon_start=1 FT /product="V2" FT /note="precoat protein" FT /db_xref="GOA:Q0R4R7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q0R4R7" FT /protein_id="ABB52051.1" FT /translation="MVPPINLVRKLCFTFIMWDPLLNEFPETVHGFRCMLAVKYLQLVE FT NAYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTSPSQFRQPICEPCCCPH FT CPRHKGKGMGEQAHEPKAQDVQDVQKPRCS" FT CDS 305..1075 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:A0A1L7BCC0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A0A1L7BCC0" FT /protein_id="ABB52048.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1072..1476) FT /codon_start=1 FT /product="C3" FT /note="replication enhancer protein" FT /db_xref="GOA:Q0R4R5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q0R4R5" FT /protein_id="ABB52050.1" FT /translation="MDSRTGELITAAQAQNGVFIWEVQNPLYFKITEHHNRPFLMNQDI FT ITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLDNLGVISINN FT VIRAVDHVLWNVLEHIVYVKQSSSIKFNIY" FT CDS complement(1217..1621) FT /codon_start=1 FT /product="C2" FT /note="transcription activator protein" FT /db_xref="GOA:Q0R4R4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q0R4R4" FT /protein_id="ABB52049.1" FT /translation="MRSSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA FT CHDHGFTHRGTHHCSSSTEWRVYLGGSKSPLFQDNRAPQQAIPHEPRHHHCPDTVQSQP FT EESVGNTQMFPSLPNLDDLTASDWSFLKGL" FT CDS complement(1524..2606) FT /codon_start=1 FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:Q0R4R3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q0R4R3" FT /protein_id="ABB52047.1" FT /translation="MPPKRFLINSKNYFLTYPKCSLTKEEALSQFQNLQTPVNKKYIKI FT CREFHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLE FT KDGDTLDWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRVIKELAPKDYVLQFHN FT LNANLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVGAAARPLRPKSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFVTLEGPLY FT SGSNQSAAQASQERDQASSC" FT CDS complement(2162..2458) FT /codon_start=1 FT /product="C4" FT /note="involved in symptom expression" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q0R4R2" FT /protein_id="ABB52052.1" FT /translation="MKMGNLIFTCSSSSRENTSAKISDSSTWYPQPGQHISIRTFRELN FT QAQTSSPIWRRTETPSTGESFRSMEDLQEGDNSQPTTLTPQRLTQAVSQKLLE" XX SQ Sequence 2759 BP; 727 A; 563 C; 654 G; 815 T; 0 other; accggatggc cgcgcttttt ttatggcccc cacagagcac taactgacaa tgacatgtgg 60 accaatgaga atcgttcctc gtagcctagt tatttcatgg tcccccctat aaacttagtg 120 cgcaagttgt gtttcacatt cattatgtgg gatccgttgt tgaacgagtt tcccgaaacc 180 gttcacggtt ttaggtgtat gctagcagtt aaatatttgc agttagtaga aaatgcgtat 240 tccccagata ctttgggata cgatttaatt agggatttaa tttcagtaat aagggctagg 300 aattatgtcg aagcgaccag cagatataat catttccacg cccgcctcga aggtacgtcg 360 ccgtctcaat ttcgacagcc catatgcgag ccgtgctgct gcccccattg tccgcgtcac 420 aaaggcaagg gcatgggcga acaggcccat gaaccgaaag cccaggatgt acaggatgta 480 cagaagccca gatgttccta gaggatgtga aggcccgtgt aaggtccagt catttgagtc 540 cagacatgat atccagcaca ttggtaaagt catgtgtgtt agtgatgtta ctcgtggtat 600 tgggctgacc cacagggtag gcaagagatt ctgtgtcaag tccgtttatg ttttgggcaa 660 gatttggatg gatgagaaca tcaagaccaa gaatcatacg aatagtgtga tgttttttct 720 agttagagac cgtagaccag ttgataaacc tcaggatttt ggagaggttt ttaatatgtt 780 tgataatgag cccagcacgg cgactgtgaa gaatgttcat cgtgatagat accaggtatt 840 aaggaagtgg tatgcaactg tcactggtgg acaatatgca tcgaaggagc aggctctcgt 900 gaagaagttt attagggtta ataattatgt tgtgtacaac cagcaagagg ctgggaagta 960 tgagaatcat actgagaatg cgttaatgtt gtatatggcg tgtactcacg cctctaaccc 1020 tgtgtatgct acattgaaga tacggatcta cttctatgat tcagtatcga attaataaat 1080 attgaatttt attgaagatg attgttttac atatacaata tgctctaata cattccataa 1140 tacatgatca actgctctaa ttacattgtt aatactgata actcctagat tatctaaata 1200 cttaagcact tgtgtcttaa agacccttaa gaaacgacca gtcggaggct gtgaggtcat 1260 ccagattcgg aaggctagga aacatttgtg tattcccaac gctttcctca ggttgtgatt 1320 gaactgtatc tggacagtga tgatgtcttg gttcatgagg aatggcctgt tgtggtgctc 1380 tgttatcttg aaatagaggg gattttgaac ctcccagata aacacgccat tctgtgcttg 1440 agctgcagtg atgagttccc ctgtgcgtga atccatggtc gtggcaggct aaggctatga 1500 agtatgaaca cccacacggg agatcaacac gacgacgcct ggtccctttc ttggctagcc 1560 tgtgctgcac tttgattgga acctgagtag agtgggcctt cgagggtgac gaagatcgca 1620 ttctttaatg cccaattttt gagtgcagaa ttcttctcct catccaaaaa ctctttatag 1680 cttgagttgg gtcctggatt gcagaggaag atagtgggaa ttccgccttt aatttgaact 1740 ggctttccgt actttgtatt tgattgccag tccctttggg cccccatgaa ttctttaaag 1800 tgctttaggt agtggggatc gacgtcatca atgacgttgt accaggcctc gttgctgtaa 1860 acctttggac taaggtctag atgaccacac agataattgt gtggacccag tgacctggcc 1920 cacattgtct tccccgtacg actatcaccc tctatgacaa tacttttagg tctcaatggc 1980 cgcgcagcgg cacccacgac gttctcagca gcccattctt caagttcttc cggaacttga 2040 tcaaaagaag aagaagaaaa aggagaaaca taaacctcca tgggaggtgt aaaaatccta 2100 tctaaattag catttaaatt atgaaattga agtacataat cttttggtgc taattcttta 2160 attactctaa gagcttctga cttactgcct gcgttaagcg ctgcggcgta agcgtcgttg 2220 gctgactgtt gtccccctct tgcagatctt ccatcgatct gaaactctcc ccagtcgagg 2280 gtgtctccgt ccttctccag ataggacttg acgtctgagc ttgatttagc tccctgaatg 2340 ttcggatgga aatgtgctga cctggttggg gataccaggt cgaagaatcg ctgattttgg 2400 cacttgtatt ttccctcgaa ctggatgagc acgtgaagat gaggttcccc attttcatga 2460 aactctctgc agattttaat gtattttttg tttactgggg tttgtaggtt ttggaattgg 2520 gaaagtgctt cctctttggt gagagagcac ttgggataag tgaggaaata atttttcgaa 2580 ttaataagga aacgctttgg gggcatgttg accaagtgag aggacccgat tgaccgctct 2640 tgcaactctc ccctgtatat cgggtctcaa tatatagtga gacccaaatg gcattattgt 2700 aatttggata acagattcaa aattctgacg ctccaaaaag cggccatccg tataatatt 2759 //