ID DQ116881; SV 1; circular; genomic DNA; STD; VRL; 2754 BP. XX AC DQ116881; XX DT 31-JUL-2006 (Rel. 88, Created) DT 20-OCT-2006 (Rel. 89, Last updated, Version 2) XX DE Pepper leaf curl Bangladesh virus segment A, complete sequence. XX KW . XX OS Pepper leaf curl Bangladesh virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2754 RA Tsai W.-S., Green S.K., Behjatnia S.A.A., Rezaian A., Iram S., Mansoor; RT ; RL Submitted (04-JUL-2005) to the INSDC. RL Virology, Asian Vegetable Research and Development Center - The World RL Vegetable Center, P.O. Box 42, Shanhua, Taian, Taiwan 741, Republic of RL China XX DR MD5; a621ffe1f76cdf4f0736f96c2dac19de. DR EuropePMC; PMC3017532; 21144019. XX FH Key Location/Qualifiers FH FT source 1..2754 FT /organism="Pepper leaf curl Bangladesh virus" FT /segment="A" FT /isolate="Pakistan" FT /mol_type="genomic DNA" FT /country="Pakistan:Khanewal" FT /isolation_source="chili" FT /clone="PC2No1" FT /db_xref="taxon:223305" FT CDS 145..501 FT /codon_start=1 FT /product="V2" FT /note="precoat protein" FT /db_xref="GOA:Q0R4T3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q0R4T3" FT /protein_id="ABB52036.1" FT /translation="MWDPLVNDFPETVHGFRCMLAVKYLQLLENTYSPDTVGYDLIRDL FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPICQPCCCPHCPRHKSQSMGEQAHEQ FT EAQDVPDVQKPRCS" FT CDS complement(296..853) FT /codon_start=1 FT /product="C5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:Q0R4T2" FT /protein_id="ABB52033.1" FT /translation="MPLPQHLVPVSMDILYSSRTGLIIKHVKHLTEILRLINGPTIPNK FT KKHNTIRMILSLDVLIHPDLAQNVNRLNTEPLPNPVGQSSTTRNITNTHDFTNVLDITS FT RLKKLDLTRAFTAPRNIWASVHPVHPGLPVHGPVRPCSGFCDADNGGSSTAGIWAVEVE FT TAAYLRGGRGNDYICWSLGHNS" FT CDS 305..1075 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:Q0R4T1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q0R4T1" FT /protein_id="ABB52032.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQFFESRRDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKVWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1081..1482) FT /codon_start=1 FT /product="C3" FT /note="replication enhancer protein" FT /db_xref="GOA:Q0R4T0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q0R4T0" FT /protein_id="ABB52035.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNQDI FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQLLNNFAVISINN FT VIRAVDHVLWHVLAQTIHVQSSNIIKFNL" FT CDS complement(1223..1627) FT /codon_start=1 FT /product="C2" FT /note="transcription activator protein" FT /db_xref="GOA:Q0R4S9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q0R4S9" FT /protein_id="ABB52034.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKRGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPQPAIPEEPRHHHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT CDS complement(1530..2615) FT /codon_start=1 FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:Q0R4S8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q0R4S8" FT /protein_id="ABB52031.1" FT /translation="MPRTHQFQVKAKNIFLTYPKCPIPKEQMLELLKNISCPSDKLFIR FT VSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNNATQFHPNFQGAKSSSDVKSYI FT EKDGDYIDWGRFQVDGRSARGGQQTANDAAAEALNAGSADAALAIIREKLPKDYIFQYH FT NLKCNLDRIFTPPLEVYVSPFCSSSFDQVPGELEEWAAENVLGGAARPLRPTSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVHSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQTGQEGDQASSR" FT CDS complement(2201..2458) FT /codon_start=1 FT /product="C4" FT /note="involved in symptom expression" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q0R4S7" FT /protein_id="ABB52037.1" FT /translation="MGACISTPSSSSRVNPSSETQDISMSLTLITPPNSTQTSRELSPA FT LMSSPTSRRTVITSTGVGFRSMEDLLEEVNRQLMMLQRRP" XX SQ Sequence 2754 BP; 715 A; 582 C; 658 G; 799 T; 0 other; accggatggc cgcgattttt taccatggac cccacaacgc acgtgctgac aaagacatgt 60 ggaccaataa aaaacgtccc tcatagctta attattcact ggtcccctat ttaaacttgg 120 tccccaagta gtgcactcat accaatgtgg gatccattag taaacgactt ccccgaaacc 180 gttcacggtt ttaggtgtat gttagcggtt aaatatctgc agttactaga aaatacatat 240 tctccagaca ctgttgggta cgatttaatc agggatttga tctccgttat tagggctaag 300 aattatgtcc aagcgaccag cagatataat catttccacg cccgcctcga aggtacgccg 360 ccgtctcaac ttcgacagcc catatgccag ccgtgctgct gcccccattg tccgcgtcac 420 aaaagccaga gcatgggcga acaggcccat gaacaggaag cccaggatgt accggatgta 480 cagaagccca gatgttccta ggggctgtga aggcccgtgt aaggtccagt tttttgagtc 540 tagacgtgat atccaacaca ttggtaaagt catgtgtgtt agtgatgtta cgcgtggtac 600 tggactgacc cacagggttg ggaagaggtt ctgtgttaag tctgtttacg ttctgggcaa 660 ggtctggatg gatgagaaca tcaagactaa gaatcatacg aatagtgtta tgttttttct 720 tgttagggat cgtaggcccg ttgataagcc tcaagatttc ggtgaggtgt ttaacatgtt 780 tgataatgag cccagtacgg ctactgtaaa gaatgtccat cgagacaggt accaagtgct 840 gaggaagtgg catgcaaccg ttacaggtgg tcaatacgca tcaaaggagc aagctcttgt 900 gaagaagttt attagggtta ataattatgt tgtgtataac cagcaagagg ctggtaagta 960 tgagaatcat agtgagaatg cattgatgtt gtatatggcg tgtacgcacg cctctaaccc 1020 tgtgtatgcg acgttgaaga tccgtatcta tttttacgac tctgtaacca attgaaatta 1080 ttaaagattg aattttatta tatttgaact ttgtacatga attgtttgtg ctaatacatg 1140 ccataataca tggtcgacag ctctaattac attgtttata ctaattacag caaaattatt 1200 taaaagctgc aacacttggg tcctaaatac ccttaagaaa tgaccagtct gaggctgtaa 1260 ggtcgtccag attcggaagg ttagaaaaca tttgtgtatc cccaacgctt tcctcaggtt 1320 gtgattgaac cgtatctgca cggtgatgat gtcttggttc ctcaggaatg gccggttgtg 1380 gtgctctgtt atcttgaaat acaggggatt tgttatctcc cagataaaca cgccattctc 1440 tgcctgagct gcagtgatgg gttcccctgt gcgtgaatcc atagccgtgg cagcgtaatg 1500 cgatgaaata tgaacagccg cagtctaggt caacgcgacg acgcctggtc cccctcttgg 1560 ccagtctgtg ctgcactttg attggaacct gagtagagtg ggccttcgag ggtgatgaag 1620 gtcgcattct ttaaagccca attttttagt gcgctatttt tctcttcatc caagaactct 1680 ttatagctgg aattgggtcc tggattgcag aggaagatag cgggaattcc acctttaatt 1740 tgaacgggct ttccgtattt tgtgttggat tgccagtccc tttgggcccc catgaattcc 1800 ttaaagtgct ttaggtagtg ggggtcgacg tcatcgatga cgttgtacca ggcgtcatta 1860 ctgtggacct tcgggctaag gtctagatgt ccacacaaat agttgtgtgg acctaatgac 1920 ctggcccaca ttgtctttcc ggtcctacta tcaccctcta tcacaatact cgtgggtctc 1980 aaaggccgcg cagcgccacc gagaacattc tcggcagccc attcctcaag ttctccggga 2040 acttgatcaa aagaagaaga acaaaaagga gaaacataaa cctccaaggg aggtgtaaaa 2100 atcctatcta aattacactt taaattatga tactgaaaaa tataatcttt aggtagtttt 2160 tccctaatta ttgctaaagc tgcgtcagct gaacctgcat ttaaggcctc cgctgcagca 2220 tcattagctg tctgttgacc tcctcgagca gatcttccat cgacctgaaa ccgaccccag 2280 tcgatgtaat caccgtcctt ctcgatgtag gacttgacat cagagctgga cttagctccc 2340 tggaagtttg ggtggaattg ggtggcgtta ttagggtgag tgacatcgaa atgtcttggg 2400 tttcggaact gggatttacc cttgaactgg atgagggcgt ggatatgcag gctcccatct 2460 tggtgtttct cttgtgacac tcggataaat aatttgtcag aagggcagga aatgttttta 2520 agaagttcga gcatttgttc ctttggtatt gggcatttgg gataagtaag gaagatattt 2580 ttggccttaa cttggaattg gtgcgtacgt ggcatattga attgggtgct cttcaaaact 2640 ctatggaatg gggtgctttg ggtgcctatt tataccaagc tcccaaatgg caaatttgta 2700 atttgcccta ctttaattca aattcccgat aatcgcggcc atccgtataa tatt 2754 //