ID DQ116880; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC DQ116880; XX DT 31-JUL-2006 (Rel. 88, Created) DT 31-JUL-2006 (Rel. 88, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus - chili pepper clone PC2No10 segment A, DE complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus - chili pepper OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Tsai W.-S., Green S.K., Behjatnia S.A.A., Rezaian A., Iram S., Mansoor; RT ; RL Submitted (04-JUL-2005) to the INSDC. RL Virology, Asian Vegetable Research and Development Center - The World RL Vegetable Center, P.O. Box 42, Shanhua, Taian, Taiwan 741, Republic of RL China XX DR MD5; ad4cbde8f7f526f964e62ef29967325f. DR EuropePMC; PMC3120783; 21496256. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi virus - chili pepper" FT /segment="A" FT /mol_type="genomic DNA" FT /country="Pakistan:Khanewal" FT /isolation_source="chili" FT /clone="PC2No10" FT /db_xref="taxon:340194" FT CDS 41..427 FT /codon_start=1 FT /product="V3" FT /db_xref="UniProtKB/TrEMBL:Q0R4U0" FT /protein_id="ABB52029.1" FT /translation="MKFKLHGLFSAWGPINRLAHQVWIHKHVGSIIARISRKRSWSKVH FT ASCKISPRDRKELFPRHSRLRSCPRSHSCSPGKELWRSDQQISSFQRPHRRYADVSTST FT APMELVQLSPLPASQKQRPGPTGR" FT CDS 120..458 FT /codon_start=1 FT /product="V2" FT /note="precoat protein" FT /db_xref="GOA:Q0R4T9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q0R4T9" FT /protein_id="ABB52028.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT CDS 280..1050 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:Q0R4T8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q0R4T8" FT /protein_id="ABB52025.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(310..795) FT /codon_start=1 FT /product="C5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:Q0R4T7" FT /protein_id="ABB52030.1" FT /translation="MHVLHRCCARFIVKHIKHFPEILGSSCRTTVTNQKKHDTVSMVFC FT LDVFIHPYLPQHIDGFHTESLPYAMCESSPSGNITNTHDFANMRDIVPRFKGLHLTRAF FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSIGAVEVETSAYLRCGR" FT CDS complement(1047..1457) FT /codon_start=1 FT /product="C3" FT /note="replication enhancer protein" FT /db_xref="GOA:Q0R4T6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q0R4T6" FT /protein_id="ABB52027.1" FT /translation="MITDSRTGEYITADRAESGVYTWGNSKSLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT YNVIRAVYHVLDNVLERTIDVWTSYDIKLDIY" FT CDS complement(1177..1596) FT /codon_start=1 FT /product="C2" FT /note="transcription activator protein" FT /db_xref="GOA:Q0R4T5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q0R4T5" FT /protein_id="ABB52026.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRIYLGKFEIPVFQNFETRQQALPNTARHNQDSNTVQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT CDS complement(1499..2584) FT /codon_start=1 FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:Q0R4T4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q0R4T4" FT /protein_id="ABB52024.1" FT /translation="MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTKKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKKYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALKVLKELAPKDYVLQFH FT NLNTNLDRIFQPPSEVYVSPFSISSFDRVPPELVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPAMIKGGIPTIFLCNKGPNSSYKEFLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPPEEEEEHSQEAS" XX SQ Sequence 2739 BP; 740 A; 588 C; 617 G; 794 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattca agctacatgg 60 cttatttagt gcgtggggac caataaatag gcttgctcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtctaagg tgcatgctag 180 ctgtaaaata tctccaagag atagaaaaga actattcccc agacacagtc ggctacgatc 240 ttgtccgaga tctcattctt gttctccggg caaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgc atcgaaggta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtccttt gaatctaggc acgatgtctc tcatattggc 540 aaagtcatgt gtgttagtga tgttacccga gggactggac tcacacatcg cgtagggaag 600 cgattctgtg tgaaatccgt ctatgtgctg gggaagatat ggatggatga aaacatcaag 660 acaaaaaacc atactaacag tgtcatgttt tttttggttc gtgaccgtcg tcctacagga 720 gctccccaag atttcgggga agtgtttaat atgtttgaca atgaacctag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gttttacgga agtggcatgc gactgtgacg 840 ggaggaacat atgcatctaa ggagcaagca ctagttagga agtttgttag ggttaataat 900 tatgttgttt ataatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctactttt atgattcggt cacaaattaa taaatatcca gttttatatc atacgaagtc 1080 catacatcaa ttgttcgctc taatacatta tccaatacat gataaactgc tcttattaca 1140 ttataaattc ctatgacacc taacatatcc aggtacttaa ggacctgggt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaact gtatttgaat cttgattatg 1320 tcgtgctgtg ttaggaaggg cctgctgtcg tgtttcaaaa ttttgaaata cagggatttc 1380 gaatttcccc aggtatatac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatataatac gaacaaccac acggcagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctggggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctgcattttt ttcttcgtcc agaaattcct tatagctgct gtttggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tggctggctt tccgtacttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtaccag gcctcattgc tatacacttt tgggctcaga tcaagatgtc 1860 cacacaagta attgtggggt cctaagcacc gagcccacat tgttttgccc gttctactat 1920 ccccctctat gactatgctt atgggcctaa aaggccgcgc agcggcacac acaacattgg 1980 atgagaccca atcgacgagt tctggcggaa ctctgtcgaa ggatgaaatt gaaaatggag 2040 aaacataaac ctcggaagga ggttgaaaaa tgcgatctaa attggtattt aaattgtgga 2100 actgcagaac gtaatccttt ggggctaatt cctttaatac tttcaaagca tcgtctttat 2160 ttcccgtgtt aatcgcctgg gcatatgcat cgttcgccgt ttgctgacca ccacgggcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaacgtc tccgtctttg tcgatgtatt 2280 ttttgacgtc cgacgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggaaac caagtcgaag aatctgttat ttttgcactg gaatttccct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatctt cgtgaagctc tctacagatc ttgatgaatt 2460 tcttcttcgt tggggtttct agggtttgca attgggaaag tgcctcttct ttagttagag 2520 agcactttgg atatgtgagg aaatagtttt tggcatttac tctaaaacga cgtggcgaag 2580 ccataaaact tgtcgttttg attcggcgtc cctcaactta tctatgtaat tggtgtctgg 2640 agtcctatat ataggtaaga caccatatgg cattattgta attttgaaaa gaaaattact 2700 ttaattcaaa ttccctaaag cggccattcg tataatatt 2739 //