ID DQ116879; SV 1; circular; genomic DNA; STD; VRL; 2756 BP. XX AC DQ116879; XX DT 31-JUL-2006 (Rel. 88, Created) DT 31-JUL-2006 (Rel. 88, Last updated, Version 1) XX DE Chili leaf curl Pakistan virus isolate Khanewal 2 clone PC5 segment A, DE complete sequence. XX KW . XX OS Chili leaf curl Pakistan virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2756 RA Tsai W.-S., Green S.K., Behjatnia S.A.A., Rezaian A., Iram S., Mansoor; RT ; RL Submitted (04-JUL-2005) to the INSDC. RL Virology, Asian Vegetable Research and Development Center - The World RL Vegetable Center, P.O. Box 42, Shanhua, Taian, Taiwan 741, Republic of RL China XX DR MD5; 7e78bef33f308c2bf2e54502be3ad069. XX FH Key Location/Qualifiers FH FT source 1..2756 FT /organism="Chili leaf curl Pakistan virus" FT /segment="A" FT /isolate="Khanewal 2" FT /mol_type="genomic DNA" FT /country="Pakistan:Khanewal" FT /clone="PC5" FT /db_xref="taxon:341712" FT CDS 147..503 FT /codon_start=1 FT /product="V2" FT /note="precoat protein" FT /db_xref="GOA:Q0R4U6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q0R4U6" FT /protein_id="ABB52022.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARFEGTPTSQLRQPICEPCHCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVPKSGCS" FT CDS 307..1077 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:Q0R4U5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q0R4U5" FT /protein_id="ABB52018.1" FT /translation="MSKRPADIIISTPVSKVRRRLNFDSPYASRATAPIVRVTKAKAWA FT NRPMNRKPRMYRMFRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1074..1478) FT /codon_start=1 FT /product="C3" FT /note="replication enhancer protein" FT /db_xref="GOA:Q0R4U4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q0R4U4" FT /protein_id="ABB52021.1" FT /translation="MDSRTGEPITAAQAENGVFIWEIQNPLYFKIIEHQNRPFLINQDI FT ITVRIQFNHNLRKALGVHKCFLVYRIWMTSQPQTGRFLRVFKTQVVKYLDRLGVVSINN FT VNRAVDHVLWNVIQHIVYVQQSYSIKFNIY" FT CDS complement(1219..1623) FT /codon_start=1 FT /product="C2" FT /note="transcription activator protein" FT /db_xref="GOA:Q0R4U3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q0R4U3" FT /protein_id="ABB52020.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRQAKRGIRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRAPEPSIPHKPRHNHRPNTVQSQP FT EESSGSAQVFSSLPNLDDFTASDWAFLEGL" FT CDS complement(1526..2638) FT /codon_start=1 FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:Q0R4U2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q0R4U2" FT /protein_id="ABB52019.1" FT /translation="MVLKSTQYNMPRQHQFQVKAKNIFLTYPKCPIPKEQMLEILKSIN FT CPSDKLFIRVSQEKHQDGSMHIHALIQFKGKSQFRNPRHFDVTHPNNATQFHPNFQGAK FT SSSDVKSYIEKDGDYIDWGRFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKL FT PKDFIFQYHNLKSNLDRIFTPPVEVYVSPCCSSSFDQVPEELEEWRSENVVDAAARPLR FT PMSIVVEGASRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNIIDDVDPHYLKHFK FT EFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKSWALKNA FT TFITLQGPLYSGSNQSAAQASQEGNQATTR" FT CDS complement(2197..2454) FT /codon_start=1 FT /product="C4" FT /note="involved in symptom expression" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q0R4U1" FT /protein_id="ABB52023.1" FT /translation="MGACISMPSSNSKVNPSSETLDISMSLTLITPPNSTQTSRELSPA FT LMSSPTSRRTVITSTGVGSRSMDDLLEEVNRQLMMLPQRP" XX SQ Sequence 2756 BP; 739 A; 578 C; 625 G; 814 T; 0 other; accggatggc cgcgattttt ttacagtggt cccaccacac gcactaacgg acatttacac 60 gtggaccaat taaaacatct cctcaaagct taattgtttc gtggtcccct atttaaactt 120 gggctccaag tagtgcactc ataccaatgt gggatccatt agtaaacgag tttcccgaaa 180 ccgttcacgg ttttaggtgt atgctagcag tgaaatatct ccagcttgta gaaaagacgt 240 attcgcccga tactctcggg tacgatttaa ttagggattt aatttcagtc atcagggcta 300 gaaattatgt cgaagcgacc agcagatata atcatttcca cgcccgtttc gaaggtacgc 360 cgacgtctca acttcgacag cccatatgcg agccgtgcca ctgcccccat tgtccgcgtc 420 accaaagcaa aagcatgggc gaacaggccc atgaacagaa agcccaggat gtacaggatg 480 ttccgaagtc cggatgttcc tagaggatgt gaaggcccat gtaaggtcca gtcctttgag 540 tctagacatg acattcaaca tataggtaaa gttatgtgta tcagtgatgt tactcgtgga 600 actgggttga cccatcgagt gggtaagagg ttttgtgtta aatccgttta tgtcttgggt 660 aagatatgga tggatgaaaa tattaagacc aagaatcaca cgaacagtgt gatgtttttt 720 ctagttcggg atcgtagacc tgtggataaa cctcaagact ttggcgaggt gtttaacatg 780 tttgataatg agcccagtac ggctactgtg aagaatgttc atcgtgatag gtatcaagtt 840 cttcggaaat ggcatgcaac agttaccggt ggacagtatg cgtctaagga acaagctctt 900 gtgaagaagt ttgtgagggt caataattat gttgtgtata accagcaaga agctgggaag 960 tatgaaaatc attctgagaa tgcgttaatg ttgtatatgg cgtgtactca tgcctctaac 1020 cctgtgtatg ctactttgaa gatacggatc tatttttatg attccgtaac aaattaataa 1080 atgttaaact ttattgaata agattgttgt acatatacaa tgtgttgtat tacattccat 1140 aatacatgat caaccgcacg atttacatta ttaatactga caactcctaa acgatctaaa 1200 tatttaacaa cctgagtctt aaagaccctc aagaaacgcc cagtctgagg ctgtgaagtc 1260 atccagattc ggtagactag aaaacacttg tgcactccca gagctttcct caggttgtga 1320 ttgaactgta ttcggacggt gattatgtct tggtttatga ggaatggacg gttctggtgc 1380 tctattatct tgaaatacag gggattttga atctcccaga taaacacgcc attctctgct 1440 tgagctgcag tgatgggttc ccctgtgcgt gaatccatag ccgtggcagc gtaatgctat 1500 gaaatatgaa cagccgcagt ctaggtcaac gcgtcgtcgc ctgattcccc tcttggcttg 1560 cctgtgctgc actttgattg gaacctgagt agagtgggcc ttggagggtg atgaaggtcg 1620 cattctttaa agcccaactt tttagcgcac tattcttctc ttcatccaag aactctttat 1680 agctagagtt gggtcctgga ttgcagagga agatagcggg aattccgcct ttaatttgaa 1740 ctggctttcc gtatttcgta ttgctttgcc agtccctttg ggcccccatg aattccttaa 1800 agtgctttag ataatgcgga tcaacgtcat caatgatgtt gtaccatgcg tcgttgctgt 1860 acaccttagg gctaaggtct agatgaccgc acaaataatt gtgtggaccc aaagacctag 1920 cccacatggt ctttcctgtt ctagaagcac cctccaccac aatactcatg ggtctcaacg 1980 gccgcgcagc ggcatcaacc acattctccg acctccactc ctcaagttct tccggaactt 2040 gatcaaaaga agaagaacaa caaggagaaa cataaacctc caccggaggt gtaaaaatcc 2100 tatctaaatt actttttaaa ttatgatatt gaaaaataaa atcttttggg agcttttccc 2160 ttattattgc taacgcagct tcagccgaac ctgcatttaa ggcctctgcg gcagcatcat 2220 tagctgtctg ttgacctcct ctagcagatc gtccatcgat ctggaaccga ccccagtcga 2280 tgtaatcacc gtccttctcg atgtaggact tgacatcaga gctggactta gctccctgga 2340 agtttgggtg gaattgggtg gcgttattag ggtgagtgac atcgaaatgt ctagggtttc 2400 ggaactggga tttacctttg aattggatga gggcatggat atgcatgctc ccatcttggt 2460 gtttttcctg tgatactctg ataaataatt tatcagaagg acaatttata gatttgagaa 2520 tttctagcat ttgttctttg ggtattgggc attttggata agttaggaag atattttttg 2580 ccttaacttg gaattggtgt tgacgtggca tattgtattg ggtgctcttc aaaaccatat 2640 ggaatggggt gctttgggtg cctatttata ccgagctccc aaatggcatt gacgtaactt 2700 cgtggaaaat tccaaaattt tcccgctcga aaaatcgcgg ccatccgtat aatatt 2756 //