ID DQ116878; SV 1; circular; genomic DNA; STD; VRL; 2858 BP. XX AC DQ116878; XX DT 31-JUL-2006 (Rel. 88, Created) DT 31-JUL-2006 (Rel. 88, Last updated, Version 1) XX DE Pepper leaf curl Pakistan virus isolate Khanewal 1 clone PC8 segment A, DE complete sequence. XX KW . XX OS Pepper leaf curl Pakistan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2858 RA Tsai W.-S., Green S.K., Behjatnia S.A.A., Rezaian A., Iram S., Mansoor; RT ; RL Submitted (04-JUL-2005) to the INSDC. RL Virology, Asian Vegetable Research and Development Center - The World RL Vegetable Center, P.O. Box 42, Shanhua, Taian, Taiwan 741, Republic of RL China XX DR MD5; 15cf001b88f3830c7974334671265d73. XX FH Key Location/Qualifiers FH FT source 1..2858 FT /organism="Pepper leaf curl Pakistan virus" FT /segment="A" FT /isolate="Khanewal 1" FT /mol_type="genomic DNA" FT /country="Pakistan:Khanewal" FT /isolation_source="diseased chili" FT /clone="PC8" FT /db_xref="taxon:341713" FT CDS 146..502 FT /codon_start=1 FT /product="V2" FT /note="precoat protein" FT /db_xref="GOA:Q0R4V2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q0R4V2" FT /protein_id="ABB52012.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARFEGTPTSQLRQPVCEPCHCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVPKSGCS" FT CDS 306..1076 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:Q0R4V1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q0R4V1" FT /protein_id="ABB52013.1" FT /translation="MSKRPADIIISTPVSKVRRRLNFDSPYASRATAPIVRVTKAKAWA FT NRPMNRKPRMYRMFRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVENVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1073..1477) FT /codon_start=1 FT /product="C3" FT /note="replication enhancer protein" FT /db_xref="GOA:Q0R4V0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q0R4V0" FT /protein_id="ABB52016.1" FT /translation="MDSRTGEPITAAQAENSVFIWEITNPLYFKITEHHNRPFLRNHDI FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTSQPQTGRFLRVFKTQVVKYLDRLGVVSINN FT VNRAVDHVLWNVIQHIVYVQQSYSIKFNIY" FT CDS complement(1218..1622) FT /codon_start=1 FT /product="C2" FT /note="transcription activator protein" FT /db_xref="GOA:Q0R4U9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q0R4U9" FT /protein_id="ABB52015.1" FT /translation="MRPSSPSKAHFTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREFRVYLGDNKSPVFQDNRAPQPAIPAEPRHHHRADTVQSQP FT EESVGDTQMFSNLPNLDDFTASDWAFLEGL" FT CDS complement(1525..2610) FT /codon_start=1 FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:Q0R4U8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q0R4U8" FT /protein_id="ABB52014.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR FT VCRELHENGEPHLHVLIQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV FT EKDRDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFCSSSFDQVPEELEEWAAENVLGAAARPLRPISIVIEGE FT SXTGKTIWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKSWALKNATFITLQGPL FT YSGSNQSATQAGQEGDQASSR" FT CDS complement(2160..2459) FT /codon_start=1 FT /product="C4" FT /note="involved in symptom expression" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q0R4U7" FT /protein_id="ABB52017.1" FT /translation="MRMGNLIYTCSSNSRENTNAQTTDSSTLFPQPGQHISIRTFRELK FT ALQMSKPMWRKTETSLTLEFSKSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF" XX SQ Sequence 2858 BP; 788 A; 577 C; 654 G; 838 T; 1 other; accggatggc cgcgaatttt ttaccgtggg ccccaccacg cacgtgctga caaagacatg 60 tgcaccaatt aaaatcgtcc ctcatagctt aattatttca tggtcccccc tataaacttg 120 ggctccaagt agtgcactct taccaatgtg ggatccatta gtaaacgagt ttcctgaaac 180 cgttcacggt tttaggtgta tgttagcagt taaatatctg cagctagtag aaaatacata 240 ttctccagac actctggggt acgatttaat tagggattta atttcagtta ttagggctag 300 aaattatgtc gaagcgacca gcagatataa tcatttccac gcccgtttcg aaggtacgcc 360 gacgtctcaa cttcgacagc ccgtatgcga gccgtgccac tgcccccatt gtccgcgtca 420 ccaaagcaaa agcatgggcg aacaggccca tgaacagaaa gcccaggatg tacaggatgt 480 tccgaagtcc ggatgttcct agaggatgtg aaggcccatg taaggtccag tcctttgagt 540 ctagacatga cattcaacat ataggtaaag ttatgtgtat cagtgatgtt actcgtggaa 600 ctgggttgac ccatcgagtg ggtaagaggt tttgtgttaa atccgtttat gtcttgggta 660 agatatggat ggatgaaaat attaagacca agaatcacac gaacagtgtg atgttttttc 720 tagttcggga tcgtagacct gtggataaac ctcaagactt tggcgaggtg tttaacatgt 780 ttgataatga gcccagtacg gctactgtgg agaatgttca tcgtgatagg tatcaagttc 840 ttcggaaatg gcatgcaaca gttaccggtg gacagtatgc gtctaaggaa caagctcttg 900 tgaagaagtt tgtgagggtc aataattatg ttgtgtataa ccagcaagaa gctgggaagt 960 atgaaaatca ttctgagaat gcgttaatgt tgtatatggc gtgtactcat gcctctaacc 1020 ctgtgtatgc tactttgaag atacggatct atttttatga ttccgtaaca aattaataaa 1080 tgttaaactt tattgaataa gattgttgta catatacaat gtgttgtatt acattccata 1140 atacatgatc aaccgcacga tttacattat taatactgac aactcctaaa cgatctaaat 1200 atttaacaac ctgagtctta aagaccctca agaaacgccc agtctgaggc tgtgaagtcg 1260 tccagattcg gaaggttaga aaacatttgt gtatccccaa cgctttcctc aggttgtgat 1320 tgaaccgtat ctgcacggtg atgatgtcgt ggttccgcag gaatggccgg ttgtggtgct 1380 ctgttatctt gaaatacagg ggatttgtta tctcccagat aaacacggaa ttctctgctt 1440 gagctgcagt gatgggttcc cctgtgcgtg aatccatagc cgtggcagcg taatgcgatg 1500 aaatatgaac agccgcaatc taggtcaacg cgacgacgcc tggtcccctt cttggccagc 1560 ctgtgttgca ctttgattgg aacctgagta aagtgggcct tggagggtga tgaaggtcgc 1620 attctttaaa gcccaacttt tgagtgcgct atttttctct tcatccaaga actctttata 1680 gcttgaattg ggtcctggat tgcagaggaa gatagcggga attccacctt taatttgaac 1740 tggctttccg tattttgtgt tggattgcca gtccctttgg gcccccatga attctttaaa 1800 gtgctttagg tagtggggat cgacgtcatc aatgacgttg taccaggcgt cattactgta 1860 gacctttggg ctaaggtcga gatgtccaca caaatagttg tgtggaccca atgacctggc 1920 ccatatcgtc ttccccgtcc wactctcacc ctctatgaca atacttatgg gtcttaaagg 1980 ccgcgcagcg gcaccgagaa cattctcggc agcccattcc tcaagttcct cgggaacttg 2040 atcaaaagaa gaagaacaaa aaggagaaac ataaacctcc aagggaggtg taaaaatcct 2100 atctaaatta gcatttaaat tatgaaattg taaaacataa tctttgggag ctttctccct 2160 taaaatattg agggccgaag acttggaccc tgaattgatt gcctcggcat atgcgtcgtt 2220 ggcagattgg caacctcctc tagctgatct gccatcgatt tggaaaactc caaagtcaat 2280 gaagtctctg tctttctcca cataggcttt gacatctgaa gagcttttag ctctctgaat 2340 gttcggatgg aaatgtgctg accgggttgg ggaaataagg tcgaagaatc tgttgtttgt 2400 gcattggtat tttccctcga attggatgag cacgtgtaga tgaggttccc cattctcatg 2460 caattctcga caaaccctaa taaacaattt attaactggg gtttccaagt tctgtaattg 2520 ggaaagtgcc tcttctttag taagagagca gttgggatat gttaggaaat aatttttagc 2580 atttatattg aatctgccag ccctaggcat attttctgta attgggaaag tgcctcttct 2640 ttagtaagag agcagttggg atatgttagg aaataatttt tagcatttat attgaatctg 2700 ccagccctag gcatattggt ggacactcaa acttactatg taatcggtgg aatgggggac 2760 aatatatatg tgtccaccaa tggcaatttg gtaattgttg tcatctaaaa aaattcaaaa 2820 ttcaaattcc gacaaaagcg gccatccgca ctaatatt 2858 //