ID DQ114477; SV 1; circular; genomic DNA; STD; VRL; 2756 BP. XX AC DQ114477; XX DT 01-JUL-2006 (Rel. 88, Created) DT 01-JUL-2006 (Rel. 88, Last updated, Version 1) XX DE Chilli leaf curl virus-[Pakistan] segment DNA A, complete sequence. XX KW . XX OS Chilli leaf curl virus-[Pakistan] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2756 RA Tsai W.S., Green S.K., Behjatnia S.A.A., Rezaian A., Iram S., Mansoor; RT ; RL Submitted (01-JUL-2005) to the INSDC. RL Virology Unit, Asian Vegetable Research and Development Center- The World RL Vegetable Center, PO Box 42, Shanhua, Tainan, Taiwan 741, Republic of China XX DR MD5; 76244b6bc8da64a18746671e03ac8e62. XX FH Key Location/Qualifiers FH FT source 1..2756 FT /organism="Chilli leaf curl virus-[Pakistan]" FT /segment="DNA A" FT /host="chilli pepper" FT /isolate="Shorkot" FT /mol_type="genomic DNA" FT /country="Pakistan" FT /clone="PC10" FT /db_xref="taxon:340896" FT gene 147..503 FT /gene="V2" FT CDS 147..503 FT /codon_start=1 FT /gene="V2" FT /product="V2 protein" FT /note="pre-coat protein" FT /db_xref="GOA:Q0ZUK9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q0ZUK9" FT /protein_id="AAZ77662.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHSRFEGTPTSQLRQPICEPCHCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVPKSGCS" FT gene 307..1077 FT /gene="V1" FT CDS 307..1077 FT /codon_start=1 FT /gene="V1" FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:Q0ZUK8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q0ZUK8" FT /protein_id="AAZ77663.1" FT /translation="MSKRLADIIISTPVSKVRRRLNFDSPYASRATAPIVRVTKAKAWA FT NRPMNRKPRMYRMFRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1074..1478) FT /gene="C3" FT CDS complement(1074..1478) FT /codon_start=1 FT /gene="C3" FT /product="C3" FT /note="replication enhancer protein" FT /db_xref="GOA:Q0ZUK7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q0ZUK7" FT /protein_id="AAZ77664.1" FT /translation="MDSRTGEPITAAQAENGVFIWEIQNPLYFKIIEHQNRPFLMNQDI FT ITVRIQFNHNLRKALGVHKCFLVYRIWMTSQPQTGRFLRVFKTQVVKYLDRLGVVSINN FT VNRAVDHVLWNVIQHIVYVQQSYSIKFNIY" FT gene complement(1219..1623) FT /gene="C2" FT CDS complement(1219..1623) FT /codon_start=1 FT /gene="C2" FT /product="C2" FT /note="transcription activor protein" FT /db_xref="GOA:Q0ZUK6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q0ZUK6" FT /protein_id="AAZ77665.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRQAKRGIRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRAPEPSIPHEPRHNHRPNTVQSQP FT EESSGSAQVFSSLPNLDDFTASDWAFLEGL" FT gene complement(1526..2611) FT /gene="C1" FT CDS complement(1526..2611) FT /codon_start=1 FT /gene="C1" FT /product="C1" FT /note="replication-associated protein" FT /db_xref="GOA:Q0ZUK5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q0ZUK5" FT /protein_id="AAZ77666.1" FT /translation="MPRQHQFQVKAKNIFLTYPKCPIPKEQILEILKSINCPSDKLFIR FT VSQEKHHDGSLHIHALIQFKGKSQFRNPRHFDVTHPNNTTQFHPNFQGAKSSSDVKSYI FT EKDGDYIDWGRFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYH FT NLKSNLDRIFTPPVEVYVSPFCSSSFDQVPEELEEWRSENVVAAAARPLRPMSIVVEGA FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNTALKSWALKNATFITLQGPL FT YSGSNQSAAQASQEGNQATTR" FT gene complement(2197..2454) FT /gene="C4" FT CDS complement(2197..2454) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /note="involved in symptom expression" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q0ZUK4" FT /protein_id="AAZ77667.1" FT /translation="MGACISMPSSNSKVNPSSETLDISMSLTLITPPNSTQTSRELSPA FT LMSSPTSRRTVITSTGVGFRSMDDLLEEVNRQLMMLPQRP" XX SQ Sequence 2756 BP; 741 A; 575 C; 627 G; 813 T; 0 other; accggatggc cgcgattttt ttaccatggt cccaccacac gcactaacgg acatttacac 60 atggaccaat taaaacatct cctcaaagcc taattgtttc gtggtcccct atttaaactt 120 gggctccaag tagtgcactc ataccaatgt gggatccatt agtaaacgag tttcccgaaa 180 ccgttcacgg ttttaggtgt atgctagcag tgaaatatct gcagctagta gaaaagacgt 240 attcgcccga tactcttggg tacgatttaa ttagggattt aatttcagtc atcagggcta 300 gaaattatgt cgaagcgact agcagatata atcatttcca ctcccgtttc gaaggtacgc 360 cgacgtctca acttcgacag cccatatgcg agccgtgcca ctgcccccat tgtccgcgtc 420 accaaagcaa aagcatgggc gaacaggccc atgaacagaa agcccaggat gtacaggatg 480 ttccgaagtc cggatgttcc tagaggatgt gaaggcccat gtaaggtcca gtcctttgag 540 tctagacatg acattcaaca tataggtaaa gttatgtgta tcagtgatgt tactcgtgga 600 actgggttga cccatcgagt gggtaagagg ttttgtgtta aatccgttta tgtcttgggt 660 aagatatgga tggatgaaaa tattaagacc aagaatcaca cgaacagtgt gatgtttttt 720 ctagttcggg atcgtagacc tgtggataaa cctcaagact ttggcgaggt gtttaacatg 780 tttgataatg agcccagtac ggctactgtg aagaatgttc atcgtgatag gtatcaagtt 840 cttcggaaat ggcatgcaac agttaccggt ggacagtatg cgtctaagga acaagctctt 900 gtgaagaagt ttgtgagggt caataattat gttgtgtata accagcaaga agctgggaag 960 tatgaaaatc attctgagaa tgcgttaatg ttgtatatgg cgtgtactca tgcctctaac 1020 cctgtgtatg ctactttgaa gatacggatc tatttttatg attccgtaac aaattaataa 1080 atgttaaact ttattgaata agattgttgt acatatacaa tgtgttgtat tacattccat 1140 aatacatgat caaccgcacg atttacatta ttaatactga caactcctaa acgatctaaa 1200 tatttaacaa cctgagtctt aaagaccctc aagaaacgcc cagtctgagg ctgtgaagtc 1260 atccagattc ggtagactag aaaacacttg tgcactccca gagctttcct caggttgtga 1320 ttgaactgta ttcggacggt gattatgtct tggttcatga ggaatggacg gttctggtgc 1380 tctattatct tgaaatacag gggattttga atctcccaga taaacacgcc attctctgct 1440 tgagctgcag tgatgggttc ccctgtgcgt gaatccatag ccgtggcagc gtaatgctat 1500 gaaatatgaa cagccgcagt ctaggtcaac gcgtcgtcgc ctgattcccc tcttggcttg 1560 cctgtgctgc actttgattg gaacctgagt agagtgggcc ttggagggtg atgaaggtcg 1620 cattctttaa agcccaactt ttcagcgcag tattcttctc ttcatccaag aactctttat 1680 agctagagtt gggtcctgga ttgcagagga agatagcggg aattccacct ttaatttgaa 1740 ctggctttcc gtatttcgta ttgctttgcc agtccctttg ggcccccatg aattccttaa 1800 agtgctttag ataatgcgga tcaacgtcat caatgacgtt gtaccatgcg tcgttgctgt 1860 acaccttcgg gctaaggtct agatgaccgc acaaataatt gtgtgggccc aaagacctag 1920 cccacatggt ctttccagtt ctagaagcac cctccaccac aatactcatg ggtctcaacg 1980 gccgcgcagc ggcagcaacc acattctccg acctccattc ctcaagttct tccggaactt 2040 gatcaaaaga agaagaacaa aaaggagaaa cataaacctc caccggaggt gtaaaaatcc 2100 tatctaaatt actttttaga ttatgatatt gaaaaataaa atcttttggg agcttttccc 2160 ttattattgc taacgcagct tcagccgaac ctgcatttaa ggcctctgcg gcagcatcat 2220 tagctgtctg ttgacctcct ctagcagatc gtccatcgat ctgaaaccga ccccagtcga 2280 tgtaatcacc gtccttctcg atgtaggact tgacatcaga gctggactta gctccctgga 2340 agtttgggtg gaattgggtg gtgttattag ggtgagtgac atcgaaatgt ctagggtttc 2400 ggaactggga tttacctttg aattggatga gggcatggat atgcaagctc ccatcgtggt 2460 gtttttcctg tgatactctg ataaataatt tatcagaagg acaatttata gatttgagaa 2520 tttctagtat ttgttctttg ggtattgggc attttggata agttaggaag atattttttg 2580 ccttaacttg gaattggtgt tggcgtggca tattgtattg ggtgctcttc aaaaccctat 2640 ggaatggggt gctttgggtg cctatttata ccgagctccc aaatggcatt gatgtaattt 2700 cgtggaaaat tccaaaattt tcccgctcga aaaatcgcgg ccatccgtat aatatt 2756 //