ID DQ102481; SV 1; linear; genomic RNA; STD; VRL; 2349 BP. XX AC DQ102481; XX DT 01-JUL-2007 (Rel. 92, Created) DT 01-JUL-2007 (Rel. 92, Last updated, Version 1) XX DE Turnip mosaic virus isolate GRC 20 polyprotein gene, partial cds. XX KW . XX OS Turnip mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2349 RA Singh A., Jenner C.E., Nettleship S.B., Foster G.D., Walsh J.A.; RT "Molecular characterization of Turnip mosaic virus"; RL Unpublished. XX RN [2] RP 1-2349 RA Singh A., Jenner C.E., Nettleship S.B., Foster G.D., Walsh J.A.; RT ; RL Submitted (24-JUN-2005) to the INSDC. RL Warwick HRI, University of Warwick, Wellesbourne, Warwick CV35 9EF, UK XX DR MD5; 00bb9e57abaef39670c2431e448bd628. XX FH Key Location/Qualifiers FH FT source 1..2349 FT /organism="Turnip mosaic virus" FT /isolate="GRC 20" FT /mol_type="genomic RNA" FT /country="Greece" FT /db_xref="taxon:12230" FT CDS <1..>2349 FT /codon_start=2 FT /product="polyprotein" FT /db_xref="GOA:A6XAB3" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR011545" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR039560" FT /db_xref="UniProtKB/TrEMBL:A6XAB3" FT /protein_id="AAZ94092.1" FT /translation="LERIIAFVALVLMMFDAERSDCVTKILNKLKGLVATVEPTVYHQT FT LNEIEDDLSERNLFVDFELSSDGDMLQQLPAEKTFASWWSHQLSRGFTIPHYRTEGKFM FT TFTRATATEVAGKIAHESDKDILLMGAVGSGKSTGLPYHLSRKGNVLLLEPTRPLAENV FT HKQLSQAPFHQNTTLRMRGLTAFGSAPISVMTSGFALNYFANNRMRIEEFDFVIFDECH FT VHDANAMAMRCLLHECDYSGKIIKVSATPPGREVEFSTQYPVSISTEDTLSFQDFVNAQ FT GSGSNCDVISKGDNILVYVASYNEVDALSKLLIERDFKVTKVDGRTMKVGNIEITTSGT FT PSKKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDSRMLSTTKTSINYGERIQRLG FT RVGRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSILGNVTVKQ FT ARTMSVFEITPFYTSQVVRYDGSMHPQVHALLKRFKLRDSEIVLNKLAIPHRGVNAWLT FT ASEYARLGANVEDRRDVRIPFMCRDIPEKLHLDMWDVIVKFKGDAGFGRLSSASASKVA FT YTLQTDVNSIQRTVTIIDTLIAEERRKQEYFKTVTSNCVSSSNFSLQSITNAIKSRMMK FT DHTCENISVLEGAKSQLLEFRNLNADHSFATKTDGISRHFMSEYGALEAVHHQNTSDMS FT KFLKLKGKWNKTLITRDVLVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKF FT RNARDNKMGREVYGDDDTIEHFFGDAYTK" FT mat_peptide <1..133 FT /product="6K1" FT /note="6 kilodalton protein 1" FT mat_peptide 134..2065 FT /product="CI" FT /note="cytoplasmic inclusion protein" FT mat_peptide 2066..2224 FT /product="6K2" FT /note="6 kilodalton protein 2" FT mat_peptide 2225..>2349 FT /product="VPg" FT /note="viral genome-linked protein" XX SQ Sequence 2349 BP; 740 A; 494 C; 557 G; 558 T; 0 other; actcgagcgt ataatagcat ttgttgcatt ggtgctcatg atgtttgacg cagaacgaag 60 cgactgtgtc actaaaattc tcaacaagct taagggacta gtcgccactg tggaacctac 120 agtctaccat cagactctca atgaaataga ggatgatttg agtgagagga acctcttcgt 180 cgattttgag cttagcagcg acggcgatat gctccaacag cttccagctg aaaagacatt 240 tgcctcatgg tggagtcatc aactaagcag aggattcaca atcccacact acaggacaga 300 agggaagttc atgactttta ccagagcaac tgccacggaa gtcgcaggta aaatagcaca 360 cgagagtgac aaagacatat tgctaatggg agcagtagga tcaggtaagt caactggctt 420 gccatatcac ctctccagaa aagggaacgt attgctcctt gaaccgactc ggccacttgc 480 agaaaacgta cacaagcagt tgtcgcaggc accattccat cagaacacaa ctcttaggat 540 gcgcggtcta acggcattcg ggtcggcgcc aatctcagtg atgaccagtg gttttgcact 600 caattatttt gcaaacaaca gaatgcgaat tgaagaattt gactttgtca tattcgacga 660 atgtcacgtt catgacgcca atgcaatggc gatgagatgt ttgctacatg aatgtgacta 720 ttctggcaag attatcaaag tttcagccac accaccaggt cgagaagttg aattctccac 780 tcaatacccc gtatcgataa gcacagaaga cacactatcg tttcaagatt ttgtgaacgc 840 acagggtagt ggaagcaatt gtgatgtgat ttcaaaaggg gataatatcc tcgtgtatgt 900 agcaagctac aatgaagtag atgcgctttc gaaacttcta atcgaaagag actttaaagt 960 cacgaaggtt gatggaagaa caatgaaagt tggaaacatt gagatcacca caagtggaac 1020 acctagtaaa aagcacttca tagttgcaac taacatcatt gagaacggtg ttactttgga 1080 catcgatgtg gttgctgatt ttggaacgaa ggtactccca tatcttgata cagacagcag 1140 aatgcttagc acaacaaaga caagcatcaa ctatggggag cgtatccaga gactaggaag 1200 agtcggaagg cacaagccag gtcatgctct gcgaataggt cacacagaga aggggttgag 1260 cgaagttcca agttgtattg caacagaagc agctttaaag tgcttcacat atgggcttcc 1320 agtaatcacc aacaacgtct cgacaagcat tcttggtaat gtaacggtaa agcaggcacg 1380 aacaatgtct gtatttgaga taacaccgtt ctacacaagc caagtggtga gatatgatgg 1440 ctctatgcac ccacaggtgc acgcactttt aaagaggttc aaactcagag actctgagat 1500 cgttttgaat aaattagcca tacctcaccg aggagtgaac gcttggctca cagctagtga 1560 gtatgcacga cttggcgcga atgttgaaga taggcgtgac gttcgaattc cttttatgtg 1620 tcgcgacatc ccagaaaagc ttcacctaga catgtgggat gtgatcgtta aattcaaagg 1680 tgatgcaggt tttggccggc tttcaagcgc cagtgcgagc aaggtagctt ataccctaca 1740 gacggacgtc aactccatac agcgaacagt cactatcata gatacactaa tcgctgagga 1800 gagaagaaag caggaatact tcaagacggt aacctctaac tgtgtctctt cttcaaactt 1860 ctcactgcag agcataacaa atgcgataaa atctcgtatg atgaaagatc acacgtgcga 1920 gaacatatca gtgcttgaag gagcaaagtc acagttactc gagtttagaa acctgaatgc 1980 tgatcactca tttgccacta aaaccgatgg aatatctcgg catttcatga gtgagtatgg 2040 agctcttgag gcagttcacc atcaaaacac cagcgacatg agcaaattcc tcaagcttaa 2100 gggcaaatgg aataaaacgc taattacgcg agatgtgttg gtgctttgtg gagttcttgg 2160 aggtggattg tggatggtta ttcagcacct acggtcaaag atttctgaac ccgtaaccca 2220 cgaagcaaaa ggcaagaggc agagacagaa actgaagttt cgcaatgccc gagacaacaa 2280 gatgggtaga gaagtgtacg gggatgatga taccatagag catttctttg gtgatgccta 2340 cacaaagaa 2349 //