ID DQ102480; SV 1; linear; genomic RNA; STD; VRL; 2351 BP. XX AC DQ102480; XX DT 01-JUL-2007 (Rel. 92, Created) DT 01-JUL-2007 (Rel. 92, Last updated, Version 1) XX DE Turnip mosaic virus isolate GRC 13 polyprotein gene, partial cds. XX KW . XX OS Turnip mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2351 RA Singh A., Jenner C.E., Nettleship S.B., Foster G.D., Walsh J.A.; RT "Molecular characterization of Turnip mosaic virus"; RL Unpublished. XX RN [2] RP 1-2351 RA Singh A., Jenner C.E., Nettleship S.B., Foster G.D., Walsh J.A.; RT ; RL Submitted (24-JUN-2005) to the INSDC. RL Warwick HRI, University of Warwick, Wellesbourne, Warwick CV35 9EF, UK XX DR MD5; 44b4cfeafcbac848dd1e48e4cf4b92ab. XX FH Key Location/Qualifiers FH FT source 1..2351 FT /organism="Turnip mosaic virus" FT /isolate="GRC 13" FT /mol_type="genomic RNA" FT /country="Greece" FT /db_xref="taxon:12230" FT CDS <1..>2351 FT /codon_start=2 FT /product="polyprotein" FT /db_xref="GOA:A6XAB2" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR011545" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR039560" FT /db_xref="UniProtKB/TrEMBL:A6XAB2" FT /protein_id="AAZ94091.1" FT /translation="LERIIAFVALVLMMFDAERSDCVTKILNKLKGLVATVEPTVYHQT FT LNDIEDDLSERNLFVDFELSSDGDMLQQLPAEKTFASWWSHQLSRGFTIPHYRTEGKFM FT TFTRATATEVAGKIAHESDKDILLMGAVGSGKSTGLPYHLSRKGNVLLLEPTRPLAENV FT HKQLSQAPFHQNTTLRMRGLTAFGSAPISVMTSGFALNYFANNRTRIEEFDFVIFDECH FT VHDANAMAMRCLLHECDYSGKIIKVSATPPGREVEFSTQYPVSISTEDTLSFQDFVNAQ FT GSGSNCDVISKGDNILVYVASYNEVDALSKLLIERDFKVTKVDGRTMKVGNIEITTSGT FT PSKKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDSRMLSTTKTSINYGERIQRLG FT RVGRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSILGNVTVKQ FT ARTMSVFEITPFYTSQVVRYDGSMHPQVHALLKRFKLRDSEIVLNKLAIPHRGVNAWLT FT ASEYARLGANVEDRRDVRIPFMCRDIPEKLHLDMWDVIVKFKGDAGFGRLSSASASKVA FT YTLQTDVNSIQRTVTIIDTLIAEERRKQEYFKTVTSNCVSSSNFSLQSITNAIKSRMMK FT DHTCENISVLEGAKSQLLEFRNLNADHSFATKTDGISRHFMSEYGALEAVHHQNTSDMS FT KFLKLKGKWNKTLITRDVLVLCGVLGGGLWMVIQHLRSKMSEPVTHEAKGKRQRQKLKF FT RNARDNKMGREVYGDDDTIEHFFGDAYTKK" FT mat_peptide <1..133 FT /product="6K1" FT /note="6 kilodalton protein 1" FT mat_peptide 134..2065 FT /product="CI" FT /note="cytoplasmic inclusion protein" FT mat_peptide 2066..2224 FT /product="6K2" FT /note="6 kilodalton protein 2" FT mat_peptide 2225..>2351 FT /product="VPg" FT /note="viral genome-linked protein" XX SQ Sequence 2351 BP; 740 A; 502 C; 559 G; 550 T; 0 other; actcgagcgt ataatagcat tcgttgcatt ggtgctcatg atgtttgacg cagaacgcag 60 cgactgtgtc acaaagattc tcaacaagct taagggatta gtcgccactg tggaacctac 120 agtctaccat cagactctca atgatataga ggatgatttg agtgagagga acctcttcgt 180 cgattttgag cttagcagcg acggcgatat gctccaacag cttccagctg aaaagacatt 240 tgcctcatgg tggagtcatc aactaagcag aggattcaca atcccacatt acagaacaga 300 agggaagttt atgactttta ccagagcaac tgccacggaa gtcgcgggta aaatagcaca 360 cgagagtgac aaagacatat tgctaatggg agcagtagga tcaggtaagt caactggctt 420 accatatcat ctctccagaa aagggaacgt attgctcctt gagccaactc ggccacttgc 480 agaaaacgta cacaagcagt tgtcgcaggc accgttccat cagaacacaa ctcttaggat 540 gcgcggacta acagcattcg ggtcggcacc aatctcagtg atgaccagtg gttttgcact 600 caattacttt gcaaataaca gaacacgaat tgaagaattc gactttgtca tatttgatga 660 atgccacgtt catgacgcca atgcaatggc gatgagatgt ttgctacacg agtgtgacta 720 ttctggcaaa attatcaaag tttcagccac accaccaggt cgagaagttg agttctccac 780 tcaataccct gtatcgataa gcacagaaga tacactatcg tttcaggatt tcgtgaacgc 840 acagggtagt ggaagcaatt gtgatgtgat ttcaaaagga gacaatatcc tcgtgtatgt 900 agcaagctac aatgaggtag acgcgctttc aaaacttcta atcgaaagag acttcaaagt 960 cacgaaggtt gatggaagaa cgatgaaagt tggaaacatc gagattacca caagtggaac 1020 acctagtaaa aagcacttta tagttgcaac caacatcatt gagaacggtg ttactctaga 1080 catcgatgtg gttgccgatt ttggaacgaa ggtactccca tatcttgaca cagatagcag 1140 aatgctcagc acaacaaaga caagcatcaa ttatggggag cgtatccaaa gactaggaag 1200 agtcggaagg cacaagccag gtcacgctct acgaataggt cacacagaga aggggttgag 1260 cgaagttcca agttgtattg caacagaagc agctttaaag tgcttcactt atgggcttcc 1320 agtgatcacc aacaacgtct cgacaagcat tcttggtaat gtaacggtga agcaggcacg 1380 aacaatgtct gtatttgaga taacaccgtt ctacacaagt caagtagtga gatatgatgg 1440 ctccatgcac ccacaggtgc acgcactttt aaagagattc aaactcagag actctgagat 1500 tgttttgaat aaattggcca tacctcaccg aggagtgaac gcttggctca cagctagtga 1560 gtatgcacga cttggcgcga atgttgaaga taggcgtgac gttcgaattc cttttatgtg 1620 tcgcgacatc ccagaaaaac ttcatctaga catgtgggac gtgattgtta aattcaaggg 1680 tgatgcgggt tttggtcggc tttcaagcgc cagtgcgagc aaggtagctt atactctaca 1740 gacggacgtc aactccatac agcgaacagt cactatcata gatacactaa tcgccgagga 1800 gagaagaaag caggaatact tcaagacagt aacctccaac tgtgtctctt cttcaaactt 1860 ctcactgcag agcataacaa atgcgataaa atctcgtatg atgaaagatc acacgtgcga 1920 gaacatatca gtgcttgaag gagcgaagtc acagttactc gagtttagaa acctgaatgc 1980 cgatcactca tttgccacca aaaccgatgg gatatctcgg catttcatga gtgagtatgg 2040 agctcttgag gcagttcacc atcagaacac cagcgacatg agcaagttcc tcaagcttaa 2100 gggtaaatgg aataaaacgc taattacgcg agatgtgttg gtgctttgtg gagttcttgg 2160 aggtggactg tggatggtta ttcaacacct gcggtcaaag atgtccgaac ccgtaaccca 2220 cgaagcgaaa ggcaagaggc aaaggcagaa attaaaattt cgcaatgccc gagacaacaa 2280 aatgggtaga gaagtgtacg gggatgatga caccatagag catttcttcg gtgacgccta 2340 cacaaagaaa g 2351 //