ID DQ102478; SV 1; linear; genomic RNA; STD; VRL; 2271 BP. XX AC DQ102478; XX DT 01-JUL-2007 (Rel. 92, Created) DT 01-JUL-2007 (Rel. 92, Last updated, Version 1) XX DE Turnip mosaic virus isolate GBR 43 polyprotein gene, partial cds. XX KW . XX OS Turnip mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2271 RA Singh A., Jenner C.E., Walsh J.A.; RT "Molecular characterization of Turnip mosaic virus"; RL Unpublished. XX RN [2] RP 1-2271 RA Singh A., Jenner C.E., Walsh J.A.; RT ; RL Submitted (24-JUN-2005) to the INSDC. RL Warwick HRI, University of Warwick, Wellesbourne, Warwick CV35 9EF, UK XX DR MD5; 894ab62d1a3b1250ce6be75858785641. XX FH Key Location/Qualifiers FH FT source 1..2271 FT /organism="Turnip mosaic virus" FT /isolate="GBR 43" FT /mol_type="genomic RNA" FT /country="United Kingdom" FT /db_xref="taxon:12230" FT CDS <1..>2271 FT /codon_start=3 FT /product="polyprotein" FT /db_xref="GOA:A6XAB0" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR011545" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR039560" FT /db_xref="UniProtKB/TrEMBL:A6XAB0" FT /protein_id="AAZ94089.1" FT /translation="RSDCVTKILNKLKGLVATVEPTVYHQTLNDIEDDLSERNLFVDFE FT LSSDGDMLQQLPAEKTFASWWSHQLSRGFTIPHYRTEGKFMTFTRATATEVAGKIAHES FT DKDILLMGAVGSGKSTGLPYHLSRKGNVLLLEPTRPLAENVHKQLSQAPFHQNTTLRMR FT GLTAFGSAPISVMTSGFALNYFANNRMRIEEFDFVIFDECHVHDANAMAMRCLLHECDY FT SGKIIKVSATPPGREVEFSTQYPVSISTEDTLSFQDFVNAQGSGSNCDVISKGDNILVY FT VASYNEVDALSKLLIERDFKVTKVDGRTMKVGNIEITTSGTPSKKHFIVATNIIENGVT FT LDIDVVADFGTKVLPYLDTDSRMLSTTKTSINYGERIQRLGRVGRHKPGHALRIGHTEK FT GLSEVPSCIATEAALKCFTYGLPVITNNVSTSILGNVTVKQARTMSVFEITPFYTSQVV FT RYDGSMHPQVHALLKRFKLRDSEIVLNKLAIPHRGVNAWLTASEYARLGANVEDRRDVR FT IPFMCRDIPEKLHLDMWDVIVKFKGDAGFGRLSSASASKVAYTLQTDVNSIQRTVTIID FT TLIAEERRKQEYFKTVTSNCVSSSNFSLQSITNAIKSRMMKDHTCENISVLEGAKSQLL FT EFRNLNADHSFATKTDGISRHFMSEYGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV FT LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT FT IEH" FT mat_peptide <1..80 FT /product="6K1" FT /note="6 kilodalton protein 1" FT mat_peptide 81..2012 FT /product="CI" FT /note="cytoplasmic inclusion protein" FT mat_peptide 2013..2171 FT /product="6K2" FT /note="6 kilodalton protein 2" FT mat_peptide 2172..>2271 FT /product="VPg" FT /note="viral genome-linked protein" XX SQ Sequence 2271 BP; 717 A; 476 C; 541 G; 537 T; 0 other; aacgaagcga ttgtgtcaca aagattctca acaagctaaa ggggctagtt gccactgtgg 60 aacctacagt ctaccatcag actctcaatg atatagagga tgatttgagt gagaggaacc 120 tcttcgtcga ttttgagctt agcagcgatg gcgatatgct ccaacagctt ccagctgaaa 180 agacatttgc ctcatggtgg agtcatcaac taagcagagg attcacaatc ccgcactaca 240 ggacagaagg gaagttcatg acttttacca gagcaactgc cacggaagtc gcaggtaaaa 300 tagcacacga gagtgacaaa gacatattgc taatgggagc agtaggatca ggtaagtcaa 360 ctggcttgcc ctatcatctc tccagaaaag gaaatgtgtt gctccttgag ccgactcggc 420 cacttgcaga aaacgtacac aagcagctgt cgcaggcacc gttccatcag aacacaactc 480 ttaggatgcg tggactaacg gcattcggat cggcaccaat ctcagtaatg accagtggtt 540 ttgcactcaa ttactttgca aacaacagaa tgcgaatcga ggaatttgac tttgtcatat 600 ttgatgaatg tcatgttcat gacgccaatg caatggcgat gagatgttta ctacatgagt 660 gtgactactc tggcaaaatc atcaaagttt cagccacacc accaggtcga gaagttgagt 720 tctccactca ataccccgta tcgataagca cagaagacac actatcgttt caagattttg 780 tgaacgcaca gggtagtgga agcaattgtg atgtgatttc aaaaggagac aatatcctcg 840 tgtatgtagc aagctacaat gaggtagacg cgctttcaaa acttctaatt gaaagagact 900 tcaaagtcac gaaggttgat ggaagaacaa tgaaagttgg aaacattgag atcaccacaa 960 gtggaacacc tagtaagaaa cacttcatag ttgcaactaa catcattgag aacggtgtta 1020 ctctagacat cgatgtggtt gctgattttg gaacgaaggt actcccatat cttgatacag 1080 acagcagaat gcttagcaca acaaagacaa gcatcaatta tggggagcgt atccaaaggc 1140 taggaagagt cggaaggcac aagccaggtc acgctctgcg aataggtcac acagagaagg 1200 ggttgagcga agttccaagt tgcattgcaa cagaagcagc tttaaagtgc ttcacttatg 1260 gacttccagt gatcaccaac aatgtctcga caagcattct tggtaatgta acggtgaaac 1320 aggcacgaac aatgtctgtg tttgagataa caccgttcta cacaagccaa gtggtgagat 1380 atgatggctc catgcaccca caggtgcacg cacttttaaa gagattcaaa ctcagagact 1440 ctgagattgt tttgaataaa ttagccatac ctcaccgagg agtgaacgct tggctcacag 1500 ctagtgagta tgcacgactt ggcgcgaatg ttgaagacag gcgtgacgtt cgaattcctt 1560 tcatgtgtcg cgacatccca gaaaaacttc atctagacat gtgggatgtg attgttaaat 1620 tcaaaggtga tgcaggtttt ggtcggcttt caagtgccag tgcgagcaag gtggcttata 1680 ctctacagac ggatgtcaac tccatacagc gaacagtcac tatcatagat acactaatcg 1740 ctgaggagag aaggaagcag gaatacttca agacggtgac ctccaactgt gtttcttctt 1800 caaacttctc actgcagagc ataacaaatg cgataaaatc tcgtatgatg aaagatcaca 1860 cgtgcgagaa catatcagtg cttgaaggag cgaagtcaca gttactcgag tttagaaacc 1920 tgaatgctga tcactcattt gccactaaaa ccgatggaat atctcggcat ttcatgagtg 1980 agtatggagc tcttgaggca gttcaccatc aaaacaccag cgacatgagc aaattcctca 2040 agcttaaggg caaatggaat aaaacgctaa ttacgcgaga tgtgttggta ctttgtggag 2100 ttcttggagg tggattgtgg atggttattc agcacctgcg gtcaaaaatt tccgaacctg 2160 taacccacga agcgaaaggc aagaggcaaa ggcagaaact gaagtttcgc aatgcccgag 2220 ataacaagat gggtagagaa gtgtacggag atgacgatac catagagcat t 2271 //