ID DQ091194; SV 2; linear; mRNA; STD; VRL; 2879 BP. XX AC DQ091194; XX DT 01-JAN-2006 (Rel. 86, Created) DT 07-APR-2010 (Rel. 104, Last updated, Version 4) XX DE Blackberry chlorotic ringspot virus segment RNA 2 p2 protein and p2b DE protein mRNAs, complete cds. XX KW . XX OS Blackberry chlorotic ringspot virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-2879 RX DOI; 10.1111/j.1744-7348.2006.00078.x. RX AGRICOLA; IND43840778. RA Jones A.T., McGavin W.J., Gepp V., Zimmerman M.T., Scott S.W.; RT "Purification and properties of blackberry chlorotic ringspot, a new virus RT species in subgroup 1 of the genus Ilarvirus found naturally infecting RT blackberry in the UK"; RL Ann. Appl. Biol. 149(2):125-135(2006). XX RN [2] RP 1-2879 RX DOI; 10.1007/s00705-010-0601-8. RX PUBMED; 20195656. RA Tzanetakis I.E., Martin R.R., Scott S.W.; RT "Genomic sequences of blackberry chlorotic ringspot virus and strawberry RT necrotic shock virus and the phylogeny of viruses in subgroup 1 of the RT genus Ilarvirus"; RL Arch. Virol. 155(4):557-561(2010). XX RN [3] RP 1-2879 RA Jones A.T., McGavin W.J., Gepp V., Zimmerman M.T., Scott S.W.; RT ; RL Submitted (10-JUN-2005) to the INSDC. RL Dept of Entomology, Soils, and Plant Sciences, Clemson University, 118 Long RL Hall, Clemson, SC 29634-0315, USA XX RN [4] RC Sequence update by submitter RP 1-2879 RA Jones A.T., McGavin W.J., Gepp V., Zimmerman M.T., Scott S.W.; RT ; RL Submitted (16-OCT-2007) to the INSDC. RL Dept of Entomology, Soils, and Plant Sciences, Clemson University, 118 Long RL Hall, Clemson, SC 29634-0315, USA XX DR MD5; f9ceded5712f013d6a6da09e22312354. DR EuropePMC; PMC5491605; 28713347. XX CC On Oct 16, 2007 this sequence version replaced gi:71836081. XX FH Key Location/Qualifiers FH FT source 1..2879 FT /organism="Blackberry chlorotic ringspot virus" FT /segment="RNA 2" FT /host="Rubus sp." FT /mol_type="mRNA" FT /country="United Kingdom" FT /db_xref="taxon:339420" FT CDS 36..2450 FT /codon_start=1 FT /product="p2 protein" FT /note="polymerase" FT /db_xref="GOA:Q2QF34" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q2QF34" FT /protein_id="AAZ42392.2" FT /translation="MDYVKENLIVYSLRSRLEFIQSFGVEPDMYKEWVSMFLFKFIVEH FT TAKFDFATIDCTFGMIVARLIPGYSDLDDEDEEHSPREIDSFYLPYDDLDVDYTTIDYR FT RDDVEVPTNEVLNLVSNASYVPEGVSWGDVTDSSFEDHLEEIQELPTFNVDEPVVSSSE FT AGLPDDDGTIQDVVWVDQSDPIVSDVVADADLRNCGFVDYQSGSIKTSKWKPKVIQVRP FT DPSIIQNAVDEIFPNHHHVDDKFFQEWVETHDIDLEVTNCDLDMSVFNDWTKGSDSRLM FT PAFSVGGLSHTVPTQRETLLAVKKRNMNVPELQSQFDHNDVLNRCVNRFLTHVVDKTRL FT SKLMPISGEEVHYFNQYVENKNPPLSEYKGPIPLVALDKYMHMIKTTLKPVEEDSLHVE FT RPIPATITYHKKGVVMMTSPYFLCAMVRLLYVLKSKFVVPTGKYHQIFHMDPERLEVSN FT FFKEIDFSKFDKSQGRLHHDVQFKLFLMLGIPEHFVTSWFNAHELSHIRDRDCGVGFSV FT DYQRRTGDACTYLGNTLVTLSVLSYVYDLSNPNISFVAASGDDSLIGSLQPLPRDKEDL FT CVSLFNFETKFPHNQPFICSKFLLVVECDDGTKEVLAVPNPLKLLQKLGPKTMQVTMID FT DYYQSLCDILWVFEDADVCRRVAELAEFRAFKGRKKCLFLESALLSLPSLVANRLKFLR FT RTINLESSKACIRNDVYSNLVDALEPMCARRLDASPRRSEICSGNEKVRIGSRNSRCGS FT WRKEYRAGDKIETPRICEGVHGRGKREPSANPQRISFRGKELTWKGGNKLP" FT CDS 2158..2793 FT /codon_start=1 FT /product="p2b protein" FT /db_xref="UniProtKB/TrEMBL:A9CB81" FT /protein_id="ABW34639.1" FT /translation="MMFIPILLMLLSPCVLADLMPHPEDPRFVPETRKSESVPETPDVV FT PGERNTEPEIKLRPRESVKVSTDGERESPVQTLNEFRLEERSSPGKVATNCLDCAITHL FT PEVAFSVKVPKLNINFEVSDFPSSRLIFASLASRIKDLPFVRSLRYPTDHQRIQLRSIG FT DVEVHIHIPKFGWKQVLKMSDVISGFELPKIPTIAPKVESCVGECLTH" XX SQ Sequence 2879 BP; 792 A; 574 C; 660 G; 853 T; 0 other; gtatttcgct gagtatccta ggcaaaacct ccgtaatgga ttatgttaaa gaaaacctca 60 ttgtctattc tttgagaagc cgactggaat tcatacagtc gtttggtgtt gaaccagaca 120 tgtataaaga atgggttagc atgttcttgt tcaagtttat agtcgaacac acagcaaagt 180 tcgactttgc cacgattgat tgtacatttg gtatgatagt cgccaggtta attcctggtt 240 attccgatct ggacgatgaa gatgaagagc attctcctag ggagattgat tccttttatc 300 ttccatacga cgatcttgat gtagactaca ctaccattga ttaccgtcgt gatgatgttg 360 aagtaccgac aaatgaggta ttgaacctcg tgtcgaatgc cagttacgtc ccagagggtg 420 tttcctgggg agacgtcact gatagttcct ttgaggatca tcttgaggaa attcaagagt 480 taccgacatt taatgtcgat gagcctgtcg tgtcctcaag tgaagccggt ctacctgatg 540 acgatggaac aatacaggat gttgtttggg tcgatcaatc cgatccgatc gtatcagatg 600 tagtggctga tgccgacttg cgtaattgtg ggttcgttga ttaccaatct gggtccatta 660 agacatctaa atggaaaccc aaggtcattc aggtcagacc cgacccgtca attattcaga 720 acgcagtcga tgaaatcttt ccaaaccacc accacgtgga tgataagttt ttccaagagt 780 gggttgaaac ccacgacatc gatctggaag ttaccaattg tgatctcgat atgtccgtct 840 ttaatgattg gactaaagga tcagattcaa ggttgatgcc cgcgttttcg gtgggtggtt 900 tgtcccatac ggtaccgact cagcgggaga cgttgttggc ggtgaagaaa cgcaacatga 960 acgtccctga gctgcagagc caatttgatc acaacgatgt actgaatcgg tgtgttaacc 1020 gtttcttaac tcacgttgtc gataagacaa gattgtctaa attgatgccg atatctggtg 1080 aagaagttca ttactttaac cagtatgtcg agaataaaaa cccgcctttg tctgaataca 1140 aaggtccgat tccactggtg gctcttgata agtatatgca tatgataaag accaccttga 1200 agcctgttga agaagactct ttacacgtag aacgacccat cccggctacc atcacatatc 1260 ataaaaaagg ggttgttatg atgacttccc cgtatttttt gtgtgcaatg gtccgattgc 1320 tctacgttct taaatcgaag tttgtggttc caacgggtaa ataccaccag attttccata 1380 tggaccctga aagacttgaa gtgtcaaatt ttttcaaaga aatcgatttt tcgaaatttg 1440 acaagtccca aggtcggtta caccacgatg tccaatttaa gttgtttctg atgttgggaa 1500 taccagaaca tttcgtgaca tcttggttca atgcacatga actgagtcac attcgggatc 1560 gtgattgtgg tgtggggttt tccgttgatt atcaacgacg tactggtgat gcatgcacgt 1620 atctcggtaa cacattggtc acgttaagtg tcctaagtta cgtgtatgat ttatccaatc 1680 cgaatatttc atttgtagca gccagtggtg acgacagtct cattggttct ctacaaccgt 1740 tgcctcggga taaggaggat ttgtgtgttt ccctctttaa tttcgagacg aaattcccac 1800 acaaccaacc atttatatgt tcaaagtttc tattggttgt tgagtgtgat gacgggacca 1860 aagaagtctt agcagtgcct aatcctttaa aacttctaca gaaattgggg cccaaaacca 1920 tgcaggttac aatgatagat gattattatc agagcctgtg tgacatcctt tgggtattcg 1980 aagatgccga cgtttgtcga agggtcgccg agctggccga attcagggcg tttaagggaa 2040 gaaagaaatg cctcttcctt gaatcggctt tattaagttt accaagtctt gtggcaaaca 2100 gattgaaatt tcttagaaga acaatcaatt tagagagttc taaagcttgt ataagaaatg 2160 atgtttattc caatcttgtt gatgctcttg agcccatgtg tgctcgcaga cttgatgcct 2220 cacccagaag atccgagatt tgttccggaa acgagaaagt ccgaatcggt tcccgaaact 2280 ccagatgtgg ttcctggaga aaggaatacc gagccggaga taaaattgag accccgcgaa 2340 tctgtgaagg tgtccacgga cggggaaaga gagagcccag tgcaaaccct caacgaattt 2400 cgtttagagg aaaggagctc acctggaaag gtggcaacaa attgccttga ttgtgctatc 2460 actcatcttc cagaggtagc tttctctgtg aaggtaccga agttgaatat aaacttcgaa 2520 gtttcagatt ttccttcatc aaggttaatc tttgccagct tggccagtag aattaaggac 2580 ttaccctttg ttcgatcatt gaggtatccc actgatcatc aaaggattca gttacgttct 2640 attggtgatg ttgaagtaca catccatatt ccaaaatttg gttggaaaca agttttgaag 2700 atgtctgatg tgatttccgg ttttgaatta ccgaagattc ccaccatcgc tccaaaagtg 2760 gagtcgtgtg ttggtgaatg tttaacccat taacatggca gctgagcgca tctatctcag 2820 cggttaatgg ttgctattaa tatctaatga tattaataat gcctccaaat tggagatgc 2879 //