ID DQ091193; SV 1; linear; mRNA; STD; VRL; 3478 BP. XX AC DQ091193; XX DT 01-JAN-2006 (Rel. 86, Created) DT 07-APR-2010 (Rel. 104, Last updated, Version 3) XX DE Blackberry chlorotic ringspot virus segment RNA 1, complete sequence. XX KW . XX OS Blackberry chlorotic ringspot virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-3478 RX DOI; 10.1111/j.1744-7348.2006.00078.x. RX AGRICOLA; IND43840778. RA Jones A.T., McGavin W.J., Gepp V., Zimmerman M.T., Scott S.W.; RT "Purification and properties of blackberry chlorotic ringspot, a new virus RT species in subgroup 1 of the genus Ilarvirus found naturally infecting RT blackberry in the UK"; RL Ann. Appl. Biol. 149(2):125-135(2006). XX RN [2] RP 1-3478 RX DOI; 10.1007/s00705-010-0601-8. RX PUBMED; 20195656. RA Tzanetakis I.E., Martin R.R., Scott S.W.; RT "Genomic sequences of blackberry chlorotic ringspot virus and strawberry RT necrotic shock virus and the phylogeny of viruses in subgroup 1 of the RT genus Ilarvirus"; RL Arch. Virol. 155(4):557-561(2010). XX RN [3] RP 1-3478 RA Jones A.T., McGavin W.J., Gepp V., Zimmerman M.T., Scott S.W.; RT ; RL Submitted (10-JUN-2005) to the INSDC. RL Dept of Entomology, Soils, and Plant Sciences, Clemson University, 118 Long RL Hall, Clemson, SC 29634-0315, USA XX DR MD5; 9e055478741634030a3216788eeacdbe. XX FH Key Location/Qualifiers FH FT source 1..3478 FT /organism="Blackberry chlorotic ringspot virus" FT /segment="RNA 1" FT /host="Rubus sp." FT /mol_type="mRNA" FT /country="United Kingdom" FT /db_xref="taxon:339420" FT CDS 37..3318 FT /codon_start=1 FT /product="replicase" FT /note="P1" FT /db_xref="GOA:Q2QF35" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q2QF35" FT /protein_id="AAZ42391.1" FT /translation="MDFTSIPSERRVSLPALNVDSLIADYVSNVRSDEATNVGRFLGEV FT ALREIKSQVDTSNGDFQKLNVGFRMTPDEKNALKSNFPGLDIVFRDSCYSSHSFAAAHR FT VCETLDIYNRFNTRTEKIIDLGGNYVTHAKQGRANVHSCCPILDVRDGARHTDRYISLA FT ASVEKKHRDLPVDFCCHKFEECQVKAPFAMAVHSISDIPITTVASHCVRRGVRKLIASV FT MMDPLMMIYDKGHIPLLNVSWEKMDVEESDGKFRTMISFHFDDAPGLSYSHDFETLSKY FT MTTNQVIVNNAYSFRVERTACLSGVYIVEMTLSMTDGHSTAYLKPMRDVSCAWLSTLRK FT KVFVKLAVPISAEWFTEPFEIRWALMDEHLVRYVSEAAFRQYSKTKDPETLVQYIATML FT SSSSNHVIINGITMRSGSPIDLEEYVPLAVTFYVMAAWRYRMIAPGVEAVTTRVEKNVD FT QIDSSGNIKSDFNVVNELLKEAGLVDPNLPHIRDVVKTAGLRVFGRKTVTRIRDDVSIV FT HPRNLLKEIIYDVKRLFGLTLSGSDYNLVDGVPAHMKATDVWSVFMENLAFPSCLNVNE FT CVNELLVNHMEMVEHDKQEEERKKNFLDARDAALITIAKALEKDSKIEDGLLPILDLCD FT IKDKLTSAKNSLSLTHEAIVASDSRLSSTVVNPYADSIKEAIRYFNEIEVVNTRNLRAI FT GTYLNWRAATDRNSYRALKGRNDSIRVYVPFERKWYSDEKDLPQYERAMTEDGYVTLQW FT CNGNLSDNCYQSVRKYHVLIVDDTCVFNSGQRMVPAMEAALKMNPTFKVTIVDGVAGCG FT KTTYLKKLARMEANPDLILTSNRSSSDELKDTIDCAEAMKYRIRTVDSYLMLKSWFSSD FT RLLFDECFLTHAGCVYAAATLAQVKEVIALGDTEQVPFISRLPEFKVQYHKLCGKIEVQ FT TTTYRCPRDATACLKTFFYKRKTVKSASRVDRSLELCPINSAVQIPCVENTLYMTHTRA FT DKDALMKIPGFNKNNIKTTHEAQGDTWDNVIMFRLSKTTGLLHSGKGPDIGSCHNLVAI FT SRHRKSFQYYTVAPHDCDDQIVKCINYSKTLSVGDLDAVRLISDN" XX SQ Sequence 3478 BP; 971 A; 650 C; 794 G; 1063 T; 0 other; gtattctgtt ttgtattcga aatagaacct ccagaaatgg attttacttc aattccctcc 60 gagagacgtg taagtcttcc tgctctgaat gttgatagtc tgattgcaga ttatgtcagc 120 aatgtcagat cagatgaagc gaccaatgtt ggtagattcc tcggtgaggt agccttgaga 180 gagattaagt ctcaagttga cacctcaaat ggtgatttcc agaagttgaa tgttggattc 240 cgcatgactc ctgatgaaaa gaatgctctg aagtcgaatt tccctggact tgatatcgtc 300 tttagagatt cttgttattc ttcccatagt tttgctgccg cacaccgtgt gtgcgagacc 360 ctggatatat ataatagatt caacacacgc actgaaaaaa taattgattt aggtggtaac 420 tatgttactc acgctaaaca aggacgggcg aatgttcatt cttgctgtcc aattttagat 480 gtgcgtgatg gtgctaggca taccgatcga tatatatcct tggctgcctc ggttgagaag 540 aaacaccggg atttacctgt cgatttttgt tgtcataaat ttgaagaatg tcaggttaaa 600 gccccgtttg ccatggctgt ccattcaatc agtgatattc caataaccac tgtagcgtca 660 cattgtgttc gccgcggtgt taggaaattg atagcttcgg tgatgatgga tccgcttatg 720 atgatttatg acaaaggtca tataccgctc ctaaatgttt cttgggagaa gatggatgtc 780 gaagagtctg atggtaaatt ccggactatg atctccttcc attttgacga tgcaccaggt 840 ttaagctact cccatgattt tgaaacgctt tccaagtaca tgactacgaa tcaagtcatt 900 gtgaataatg cctactcgtt tcgagtagaa aggactgcgt gcttatcagg agtatacatt 960 gttgaaatga ctctcagtat gactgatggt cattcaactg cttacctgaa gcccatgcgc 1020 gacgtgtcgt gcgcttggtt gtctacttta cgcaagaaag tgtttgttaa acttgcggtt 1080 cctattagtg ctgaatggtt caccgaacct tttgaaattc ggtgggcgct aatggatgag 1140 catttggtgc gatacgtgtc ggaagcggca ttccgtcaat attcaaaaac caaagatcca 1200 gagactttgg tgcaatacat cgcaacaatg ctttcctcgt catctaacca tgttatcatc 1260 aacggaatta ctatgagaag tggtagtccg attgatttgg aggagtatgt tcccttagct 1320 gtgacgtttt acgtcatggc agcatggaga taccgaatga ttgccccggg agttgaagcc 1380 gtgaccacac gcgttgagaa aaacgtggat cagatcgatt caagcgggaa cattaagtca 1440 gactttaatg tcgttaatga actgcttaag gaagctggtc tcgttgatcc gaatttacca 1500 cacatccgag atgttgtgaa gactgcagga ctccgcgttt ttggtcggaa aaccgtcaca 1560 agaatccggg atgatgtttc aattgtacac ccgagaaatt tgcttaagga gatcatttat 1620 gatgttaagc gcttatttgg tctcactctt tctggttccg actataattt agtcgatggt 1680 gttcctgcgc atatgaaggc gacagatgtt tggagcgtgt tcatggaaaa cctggcgttc 1740 ccatcatgtt tgaacgtgaa tgaatgtgtt aacgagttac ttgttaatca catggaaatg 1800 gtcgaacatg ataaacagga agaggaaaga aagaaaaatt ttctcgatgc tcgtgatgct 1860 gctttgatca caatcgcgaa ggcgctggag aaagattcta aaatcgaaga tggtttattg 1920 ccgattttgg atttgtgcga tatcaaggat aaactgactt ccgcaaaaaa ttccttgagt 1980 ctgactcatg aagcaattgt tgcttcggac tcaagattgt cgagtactgt cgtgaatcct 2040 tatgccgatt ccattaaaga agccattcgg tattttaatg aaatcgaagt cgtcaacact 2100 cgtaacctgc gtgcgattgg tacgtatttg aattggcgtg ctgcgactga ccggaattca 2160 tacagggcac tcaaaggaag aaatgattct attagagtct atgttccctt tgagagaaaa 2220 tggtattccg atgagaaaga tttaccgcag tacgaacgag ctatgactga agatggttac 2280 gttactttac aatggtgtaa tggtaacctt tccgacaatt gttatcaatc cgtgaggaaa 2340 taccacgtgt tgatagtcga tgatacatgc gtgtttaatt caggacaacg catggttccc 2400 gctatggaag cagcattaaa aatgaatccc acctttaagg tgacgatagt tgatggcgta 2460 gctggttgtg ggaaaaccac ttacttgaaa aaacttgctc ggatggaagc taatccggac 2520 ttgattttaa cgagtaatag aagctcgtct gatgagttga aagatactat tgattgtgct 2580 gaggcgatga aataccgcat tcgtacggtc gatagttatt taatgctgaa gtcttggttc 2640 tcgtcagaca gattactgtt tgatgaatgt ttcttaaccc acgctggatg tgtttatgct 2700 gccgcgacct tagctcaagt gaaagaggtt attgctcttg gtgataccga gcaagtgcct 2760 ttcatatcta ggttgccgga gtttaaagtg caatatcata agttatgtgg taagattgaa 2820 gttcaaacca ctacttacag atgcccacgt gatgccaccg cttgtttaaa aactttcttt 2880 tacaaaagga aaacggtgaa atcagctagt cgagtcgatc ggtctcttga gttatgtccc 2940 atcaatagtg ctgtccaaat tccttgtgtt gaaaatactt tgtatatgac tcacacaaga 3000 gcagacaaag acgctttgat gaagatacct ggttttaata agaacaatat aaaaacaaca 3060 cacgaggccc aaggtgatac ctgggataat gtgattatgt ttagattgtc aaaaacaacc 3120 gggttgttac actcaggtaa aggacctgat ataggctcat gccataattt ggttgcgatt 3180 tcaagacatc gcaagtcgtt ccagtattat actgttgctc ctcacgactg tgatgaccaa 3240 attgtgaagt gtattaatta ttccaagacc ctttctgtag gggatcttga tgctgtcaga 3300 ttaatttctg acaattgatt gtcattattt gacatttgtt tattcccagt ttactggatg 3360 ccgtcgttga cgatgattta tatatactag gttggcattt tgagcgcatc ttactcaaat 3420 cctagtattt ccattaatat ctaatgatat taatgatgcc tcttaatata agagatgc 3478 //