ID DQ083996; SV 1; linear; genomic RNA; STD; VRL; 3702 BP. XX AC DQ083996; AY611067; XX DT 23-OCT-2005 (Rel. 85, Created) DT 23-OCT-2005 (Rel. 85, Last updated, Version 1) XX DE Olive latent virus 1 isolate GM6, complete genome. XX KW . XX OS Olive latent virus 1 OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphanecrovirus. XX RN [1] RP 1-3702 RX DOI; 10.1016/j.virusres.2004.09.007. RX PUBMED; 15681070. RA Felix M.R., Cardoso J.M., Oliveira S., Clara M.I.; RT "Viral properties, primary structure and phylogenetic analysis of the coat RT protein of an Olive latent virus 1 isolate from Olea europaea L"; RL Virus Res. 108(1-2):195-198(2005). XX RN [2] RP 1-3702 RX DOI; 10.1007/s00705-005-0619-5. RX PUBMED; 16132177. RA Felix M.R., Cardoso J.M., Varanda C.M., Oliveira S., Clara M.I.; RT "Complete nucleotide sequence of an Olive latent virus 1 isolate from olive RT trees. Annotated Sequence Record"; RL Arch. Virol. 150(11):2403-2406(2005). XX RN [3] RP 1-3702 RA Felix M.R., Cardoso J.M.S., Oliveira S., Clara M.I.E.; RT ; RL Submitted (28-APR-2004) to the INSDC. RL Departamento de Sanidade Animal e Vegetal, Universidade de Evora, Apartado RL 94, Evora 7002-554, Portugal XX RN [4] RC Nucleotide sequence updated by submitter RP 1-3702 RA Felix M.R., Cardoso J.M.S., Oliveira S., Varanda C.M.R., Clara M.I.E.; RT ; RL Submitted (02-JUN-2005) to the INSDC. RL Sanidade Animal e Vegetal, Universidade de Evora, Apartado 94, Evora RL 7002-554, Portugal XX DR MD5; 2159a249163879f43258e76a85377ece. XX CC On Oct 23, 2005 this sequence version replaced gi:51828816. XX FH Key Location/Qualifiers FH FT source 1..3702 FT /organism="Olive latent virus 1" FT /host="Olea europaea L. (olive)" FT /isolate="GM6" FT /mol_type="genomic RNA" FT /country="Portugal" FT /db_xref="taxon:47669" FT CDS 61..2235 FT /codon_start=1 FT /transl_except=(pos:667..669,aa:OTHER) FT /product="RNA dependent RNA polymerase" FT /note="readthrough stop codon" FT /db_xref="GOA:Q38RB2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q38RB2" FT /protein_id="AAZ43259.1" FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQNSILAI FT EDVEHFEDINECFEESSGGQSQRTKVVAEGAYSPVKSERTRRVRKQKKAKFVKYLVNEA FT RAEFGLPKATEANRLMVQHFLLRRCKDWGVVTSQCHNNVALALTLVFVPTEDDLLARAM FT MNTYKTRSAVRGMDNLQGEGWWNNRLGIGGQAGWAFRAKXGCLERRPGFSTSVSRGNHP FT DLVVKPSGHPEKQRQLLRYSGIGGHLLIGIHNNSLSNLRRGLMERVFYVEGPNGLQDAP FT KPVRGAFNSLNKFRDLYTKNSWRHSPVTNEQFLMNYSGRKLTIYKEAVDSLSHQPLSLR FT DSRLKTFVKAEKLNLSKKPDPAPRVIQPRSPRYNVCLGRYLRHYEHHAFKTIAKCFGEI FT TVFKGFTLEQQGEIMFSKWKKYVNPVAVGLDASRFDQHVSVEALQYEHEFYIRDYPNDK FT QLKWLLKQQLSNIGTAFASDGIIKYKKEGCRMSGDMNTSLGNCILMCAMVYGLKEHLGI FT NLSLANNGDDCVIVCEKADLKKLTSSIEPYFRQFGFKMEVEQPVDIFERIEFCQTQPVF FT DGYQYIMVRKPSVVTSKDVTSLIPCQNQAQYAEWLQAVGECGMSINGGIPVMQNFYHML FT QTGVKRTKFTKTGEFQTNGLGYHSRYMHRVARAISPETRLSFYLAFGITPDLQEALEAF FT YDTHTLELDDVVPVDTYQVSGEHLINGLPN" FT CDS 61..669 FT /codon_start=1 FT /product="p23" FT /db_xref="GOA:Q38RB1" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q38RB1" FT /protein_id="AAZ43260.1" FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQNSILAI FT EDVEHFEDINECFEESSGGQSQRTKVVAEGAYSPVKSERTRRVRKQKKAKFVKYLVNEA FT RAEFGLPKATEANRLMVQHFLLRRCKDWGVVTSQCHNNVALALTLVFVPTEDDLLARAM FT MNTYKTRSAVRGMDNLQGEGWWNNRLGIGGQAGWAFRAK" FT CDS 853..2235 FT /codon_start=1 FT /product="p52" FT /db_xref="GOA:Q38RB0" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q38RB0" FT /protein_id="AAZ43261.1" FT /translation="MERVFYVEGPNGLQDAPKPVRGAFNSLNKFRDLYTKNSWRHSPVT FT NEQFLMNYSGRKLTIYKEAVDSLSHQPLSLRDSRLKTFVKAEKLNLSKKPDPAPRVIQP FT RSPRYNVCLGRYLRHYEHHAFKTIAKCFGEITVFKGFTLEQQGEIMFSKWKKYVNPVAV FT GLDASRFDQHVSVEALQYEHEFYIRDYPNDKQLKWLLKQQLSNIGTAFASDGIIKYKKE FT GCRMSGDMNTSLGNCILMCAMVYGLKEHLGINLSLANNGDDCVIVCEKADLKKLTSSIE FT PYFRQFGFKMEVEQPVDIFERIEFCQTQPVFDGYQYIMVRKPSVVTSKDVTSLIPCQNQ FT AQYAEWLQAVGECGMSINGGIPVMQNFYHMLQTGVKRTKFTKTGEFQTNGLGYHSRYMH FT RVARAISPETRLSFYLAFGITPDLQEALEAFYDTHTLELDDVVPVDTYQVSGEHLINGL FT PN" FT CDS 2219..2440 FT /codon_start=1 FT /product="p8" FT /db_xref="UniProtKB/TrEMBL:Q38RA9" FT /protein_id="AAZ43262.1" FT /translation="MDYQTEVSEDNVSVRGRARRGTEDKKHNGSGLTGVKRHAVSETSQ FT KSQQGTGNGTMTNIAEEQTITVTYNFNF" FT CDS 2443..2613 FT /codon_start=1 FT /product="p6" FT /db_xref="GOA:Q83941" FT /db_xref="UniProtKB/TrEMBL:Q83941" FT /protein_id="AAZ43263.1" FT /translation="MAVCRCCDTSPGITLFPYFAILILILAILVVGTPNQQYHHSPSTY FT EYKTQHISIAK" FT CDS 2635..3447 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q58ZK2" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q58ZK2" FT /protein_id="AAU09671.1" FT /translation="MVNYYWDSRIQRWFYESGPQRVRTYMKADFTPPNGKLPARKTKRS FT PPNRGNLQVLPVTAPAAGGVISTRRRVPRITTTNEQTVVRNTEIISAINSAALGAFSAT FT TVTVIPSNLSWLAGLSDLYSKYRWRKLRFIYIPVCPTSTQGNVSMSLSFDRIDAQPTSI FT TQMQQGYRAITFPPYAGYDGAMALSSFGNIPGMVVVDVDCARMDKLWYPNVTLATFLAM FT ATNIQNGYCGVTLSTASDQGPAAATNFGQVFCQYEIEFIEPVNPTVNV" XX SQ Sequence 3702 BP; 1003 A; 879 C; 910 G; 910 T; 0 other; tagtatacat accaagtata cgataccggt gcaagcccgt acacagctaa agtgtctaaa 60 atggagttac ccaaccaaca taagcaaact gctgctgaag gtttcgtttc tttccttaac 120 tggctttgta atccctggag acgtcaacgt acagtcaacg ctgctgtcgc ttttcagaat 180 agcattcttg ctattgagga cgtggaacat ttcgaagata tcaacgaatg tttcgaggaa 240 tcatctggag gccaatcgca gcgcactaag gttgtcgctg aaggggctta ttctcccgta 300 aaatccgaac gcacccgccg agtccgcaag caaaagaagg ccaaattcgt caaatatttg 360 gttaatgagg ctcgtgccga gtttggtctc cccaaagcta cagaggccaa tcgactcatg 420 gtgcaacact tcctgctccg aaggtgtaag gattgggggg ttgtcacatc ccagtgccac 480 aacaatgttg cactcgcctt gactctcgtg tttgtcccaa cagaggatga tttgctggcg 540 cgagctatga tgaacacgta caagacgagg tctgcggtcc gtggtatgga caacctccaa 600 ggtgaggggt ggtggaacaa caggcttggc ataggtggcc aggccggctg ggcctttcgg 660 gccaagtagg ggtgcctaga gaggaggccg gggttttcca cgtctgtttc gcgtggaaac 720 caccccgatc tggtggtcaa accatcagga caccccgaga aacagcgtca gttgttacgc 780 tatagtggaa ttggcggcca tttattaatc ggcatccaca acaactctct ctccaacttg 840 cgtaggggct taatggagag agtattctac gttgagggac ccaatgggct ccaagacgcc 900 cctaaacccg ttcggggggc attcaactcc ctgaataagt ttcgagacct atataccaaa 960 aatagttggc gtcattcccc tgtaaccaat gaacaattct tgatgaatta ctcgggcagg 1020 aaactaacta tttacaaaga agcggttgat agtttgtcgc atcaaccact tagcttacgg 1080 gactcgaggc tgaagacttt cgttaaggcc gaaaaactta atctgagcaa gaagccagat 1140 ccagcacccc gggtcattca acccaggtca cctcggtaca acgtttgttt gggtcgttat 1200 ctacgtcact atgaacacca cgcgttcaaa accattgcta aatgctttgg ggagatcacg 1260 gtctttaaag ggtttactct agagcaacaa ggcgaaatca tgttttcgaa gtggaagaaa 1320 tatgttaatc ccgtcgccgt tggactcgat gcaagtcggt tcgaccaaca cgtgtcagtt 1380 gaagcacttc aatatgagca tgaattttac attagagatt acccgaatga taaacagcta 1440 aaatggttgt taaagcaaca actgagcaat attggcacag cgtttgctag tgatggcatc 1500 ataaagtaca agaaggaggg ttgtcgtatg agtggagata tgaacaccag tttgggcaat 1560 tgcattctca tgtgtgcgat ggtctacggg ttgaaggaac acctgggcat aaatttatcc 1620 cttgccaata atggggatga ctgcgtcatt gtctgtgaga aagcggattt gaagaaattg 1680 acaagcagca tcgaaccata ttttaggcaa tttggattca aaatggaggt ggaacaaccc 1740 gtagatatat ttgagcgcat tgagttttgt caaacccaac ctgtgttcga tggctaccaa 1800 tacatcatgg ttcgaaaacc ctcggtagtc acttcgaagg atgtcactag cttaatccca 1860 tgccagaatc aggctcaata tgcagaatgg ctgcaagctg tgggtgagtg cggaatgagt 1920 atcaatggtg gaatacctgt tatgcagaac ttttaccata tgctccaaac tggagttaaa 1980 cgcaccaaat tcaccaagac cggcgagttt cagacgaacg ggttggggta tcactctaga 2040 tatatgcata gagtggcccg agccatttcg cccgaaaccc gtttatcctt ctatttagcg 2100 ttcggtatca caccagacct tcaggaagca ctggaggcct tttatgatac ccatacgctt 2160 gagttggatg atgttgtccc agttgatacc taccaagtat caggagagca tttgatcaat 2220 ggattaccaa actgaggtta gtgaggataa cgtgagcgta cgcggtcggg ctaggagggg 2280 cactgaggat aagaagcaca atggatcggg attaactggc gttaagcgtc atgcggtgag 2340 tgaaacatct cagaaatcac agcaaggtac tggcaacggc acgatgacca acatagctga 2400 agagcagacc attaccgtga catacaactt taacttttag ttatggctgt gtgtcgctgt 2460 tgtgatactt caccaggtat tacattattc ccttactttg ctattctcat tctcatcctt 2520 gcaatattag ttgttggaac tccaaaccag caatatcatc attctcctag tacttacgag 2580 tataagactc aacacatttc gatcgcaaaa tagacatttc gcaactctct caacatggtt 2640 aattattact gggatagtcg aattcagagg tggttctacg aaagtggacc acagcgtgtc 2700 cgaacatata tgaaagcgga tttcacccca ccaaacggca aactgcctgc ccgcaagact 2760 aaaaggtcac ccccgaatag gggcaacctc caggttcttc cggttacagc acccgctgct 2820 ggtggagtga tctccacaag aagacgcgtt cctcgaatta ctactactaa tgagcagact 2880 gtcgtgagaa acacagaaat cataagtgcc attaactctg ccgctctagg tgcattttcg 2940 gcgaccactg tcacggtgat cccgtccaac ctctcatggt tggcagggtt gtccgatttg 3000 tacagcaagt accgttggcg caagctccgg tttatttata ttccggtctg cccaaccagc 3060 acacaaggca atgtctctat gtcactatca ttcgacagaa tcgatgcgca gccaacaagc 3120 atcactcaaa tgcaacaggg ctaccgtgcc atcacgttcc cgccttacgc ggggtatgat 3180 ggtgctatgg ccttgtcgtc cttcggcaac attcctggaa tggttgtcgt cgatgtggac 3240 tgtgcacgaa tggacaagtt gtggtatcct aatgttaccc tggccacctt ccttgccatg 3300 gcaactaaca tccagaacgg atattgcgga gtaaccctgt ccactgcaag tgatcaaggg 3360 ccagccgccg ccactaactt tggccaagtg ttctgccagt acgaaatcga atttatagaa 3420 ccagtgaacc caactgtcaa tgtgtaacca cacaacgatg ggtgagttgc gtaactgtgt 3480 caattcctaa aggttttagt agagcggtaa gcaagacgga tcctgggaaa caggtttaac 3540 gggctggggg tggtgccccg gccgtcgcat cacttgctga tacaatctac aaggcccatg 3600 gaagggtctg cacaggtatc cacgccaagg acggggcgaa agtctcggac ggggggtagt 3660 ggacccaaca ccagattgag gggcttttgc cccacccccc cg 3702 //