ID DQ083765; SV 1; circular; genomic DNA; STD; VRL; 2744 BP. XX AC DQ083765; XX DT 01-JUL-2007 (Rel. 92, Created) DT 01-JUL-2007 (Rel. 92, Last updated, Version 1) XX DE Pepper yellow leaf curl Indonesia virus isolate Bogor tomato, complete DE genome. XX KW . XX OS Pepper yellow leaf curl Indonesia virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2744 RA Tsai W.S., Shih S.L., Green S.K., Akkermans D., Rauf A.; RT "Molecular characterization of tomato and pepper infecting begomoviruses in RT Indonesia"; RL Unpublished. XX RN [2] RP 1-2744 RA Tsai W.S., Green S.K., Rauf A.; RT ; RL Submitted (02-JUN-2005) to the INSDC. RL Virology, Asian Vegetable Research and Development Center, P. O. Box 42, RL Shanhua, Tainan, Taiwan 741, Republic of China XX DR MD5; 7710a0a2a7a261036f279ec5cfe56fa7. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Pepper yellow leaf curl Indonesia virus" FT /isolate="Bogor tomato" FT /mol_type="genomic DNA" FT /country="Indonesia:Bogor, Java" FT /isolation_source="diseased tomato" FT /collection_date="2000" FT /db_xref="taxon:292477" FT gene 135..488 FT /gene="V2" FT CDS 135..488 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:A6XA56" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A6XA56" FT /protein_id="AAY86750.1" FT /translation="MWDPLVHPFPETLHGFRCMLAIKYLQSLEATYSPDTVGGEFVKDL FT ICLLRCKNYAEAFHRYSVVVANVYNTPETKLRESVQSPCCCPHCPRHVLQTKSMGKSAY FT VSETEILQGSKDQ" FT gene 295..1071 FT /gene="CP" FT CDS 295..1071 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="V1" FT /db_xref="GOA:A6XA63" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A6XA63" FT /protein_id="AAY86751.1" FT /translation="MPKRSIDTVSSLPMSITRRRLNYASQYSLPAAAPTAPGMSYKRRA FT WVNRPMYRKPRFYRGRRTSDVPRGCEGPCKVQSFEQRHDVTHTGKVLCVSDVTRGNGIT FT HRVGKRFCVKSVYIIGKVWMDENIKSKNHTNNVMFWLVRDRRPVTTPYGFGELFNMYDN FT EPSTATIKNDLRDRVQVLHRFSATVTGGQYASKEQAIVKRFFRVNNYVVYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDNVTN" FT gene complement(1068..1478) FT /gene="C3" FT CDS complement(1068..1478) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:A6XA58" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A6XA58" FT /protein_id="AAY86752.1" FT /translation="MDMDFRTGEYITAAQAQNGVYIWKVPNPLYFKVLRHCSRGYNTNM FT DYIEVQIQFNHNLRKALEIHKCFLIFHIWTRLRPQIWHFLRVFKNNVIRYLSNIGVVSI FT NNVIRAVNYVLWDVLEQTVYAKQLHIIKFKLY" FT gene complement(1213..1620) FT /gene="C2" FT CDS complement(1213..1620) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:A6XA65" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A6XA65" FT /protein_id="AAY86753.1" FT /translation="MRPSSPSTSHSTQIPQKIQHRLAKKKIIRRRRIDLDCGCSYYLSI FT NCHGYGFSHRGVHHCSSGAEWRLYLEGSKSPLFQGAEALQQRVQHQHGLHRSTNSIQPQ FT PEESAGDSQVFFNLPHLDSFTSSDLAFLKSI" FT gene complement(1520..2608) FT /gene="C1" FT CDS complement(1520..2608) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /note="Rep" FT /db_xref="GOA:A6XA66" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A6XA66" FT /protein_id="AAY86755.1" FT /translation="MPPPRRFKIQNKNYFLTYPHCSLTKEEALEQLKSINTPVNKLFVK FT ICRELHEDGSPHLHVLLQFEGKYVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYM FT DKDGDSIEWGEFQIDGRSARGGQHAVNDVYAQALNCGCKSDALQLIKDLAPKDYVLQYH FT NLSVNFDKIFAKPVDTFVSPYPSSSFDQVPEELRQWAGENVKDAAARPWRPISIVIEGE FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDSWYNVIDDVDPHYLKHFKEFMGAQRNW FT QSNTKYGKPIQIKGGIPTIFLCNPGPASSYKEYLAEDKNTALQSWALKNATFVTINEPL FT YSNSTEDTAQTCEEENNPQETN" FT gene complement(2254..2451) FT /gene="C4" FT CDS complement(2254..2451) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A6XA61" FT /protein_id="AAY86754.1" FT /translation="MGALISMCSSNSKGNTSAPTTDSSTWYPQPGQHISIRTFRELSQA FT PMSRRTWTKTVIQSNGENFR" XX SQ Sequence 2744 BP; 739 A; 576 C; 623 G; 806 T; 0 other; accgagtgcc gcgaaatttt tttaaatgtg gtcccacagg ccagcctttc gactgaccaa 60 tcacattgct tctgcaaacc ttagttagtg ggtcgcccac tataaagata gggaccaccc 120 tccactatcc aaggatgtgg gatccgcttg ttcatccttt tcctgaaacc ctacacgggt 180 ttcgatgcat gctggcgatc aagtatttgc aaagcttaga ggctacgtat tctcctgata 240 cggttggagg tgaattcgtg aaggatttaa tctgcctgtt gcggtgtaaa aattatgccg 300 aagcgttcca tcgatacagt gtcgtcgttg ccaatgtcta taacacgccg gagactaaac 360 tacgcgagtc agtacagtct ccctgctgct gcccccactg ccccaggcat gtcttacaaa 420 cgaagagcat gggtaaatcg gcctatgtat cggaaaccga gattctacag gggtcgaagg 480 accagtgatg ttccgcgggg ttgtgaagga ccgtgtaagg tccaatcctt tgaacagaga 540 catgacgtaa cacatacggg gaaggtcctt tgcgtttccg atgtcacaag aggtaatggt 600 attacgcaca gagttggtaa aagattctgt gtgaaatctg tatatattat aggcaaagta 660 tggatggacg aaaacatcaa gtcaaagaac cacactaaca atgtcatgtt ttggcttgtt 720 cgtgaccggc gacctgttac tacaccgtat ggcttcggcg agttgttcaa catgtatgat 780 aatgaaccca gtacagcaac tatcaagaac gatcttcgtg atcgtgtgca ggtgttacat 840 cgtttttcag caacagtcac tggtggtcag tacgcaagca aagaacaagc aatcgtgaag 900 agatttttca gagttaacaa ctatgttgtt tacaatcatc aggaagcagc aaaatatgaa 960 aatcacacag aaaatgcatt attgctgtat atggcatgta ctcatgcatc taaccctgta 1020 tacgcgacat tgaaaatccg tatttacttc tacgacaatg taacaaatta ataaagcttg 1080 aattttatta tatgcaactg cttggcgtac actgtctgtt caagtacatc ccataaaaca 1140 taatttaccg ccctaattac attgtttatt gacacaacgc ctatattgga cagatatcta 1200 attacattgt tcttaaatac tcttaagaaa tgccaaatct gaggacgtaa acgagtccaa 1260 atgtggaaga ttaaaaaaca cttgtgaatc tccagcgctt tcctcaggtt gtggttgaat 1320 tgaatttgta cttctatgta gtccatgttg gtgttgtacc ctctgctgca gtgcctcagc 1380 accttgaaat agaggggatt tggaaccttc caaatataga cgccattctg cgcctgagct 1440 gcagtgatgt actccccggt gcgaaaatcc atatccatga cagttaatac tgaggtaata 1500 tgagcagccg cagtctaagt caattcgtct cctgcggatt attttcttct tcgcaagtct 1560 gtgctgtatc ttctgtggaa tttgagtaga gtggctcgtt gatggtgacg aaggtcgcat 1620 tttttagtgc ccaagattgt aatgcagtat ttttgtcctc tgcaagatat tctttatatg 1680 aggaagcagg acctggattg cagaggaaga tagtgggaat gccaccttta atttgaattg 1740 gtttgccgta ctttgtgttg ctttgccagt tcctctgggc ccccatgaac tctttaaaat 1800 gctttagata gtgggggtca acgtcatcaa tgacgttgta ccaggagtca ttgttgtata 1860 ccttggggct caagtcaaga tgtccgcaaa gataattatg tgggcctaac gacctagccc 1920 acatagtttt gcctgtacga ctctcacctt ctatgacaat gctaatgggc ctccatggcc 1980 gcgcagcggc atccttcacg ttttcaccag cccattggcg tagctcctct ggaacttggt 2040 caaacgacga cgacggatat ggtgaaacaa atgtatctac aggtttagca aatattttat 2100 cgaaattaac acttaaattg tggtactgta gaacatagtc ttttggagca aggtctttaa 2160 tcaattgaag agcatctgac ttacatccac aatttagggc ctgcgcgtaa acatcgttta 2220 ctgcgtgctg accacctcgt gcagatcggc catctatctg aaattctccc cattcgattg 2280 aatcaccgtc tttgtccatg tacgccttga catcggagct tgacttagct ccctgaatgt 2340 tcggatggaa atgtgctgac ctggttgggg ataccaggtc gaagaatctg ttgttggtgc 2400 agacgtattt cccttcgaat tggaggagca catggagatg agggctccca tcttcgtgaa 2460 gttctctaca gatcttgaca aacagtttgt tgacaggagt gttgatggat tttaattgtt 2520 cgagtgcttc ttctttggtt agagaacagt gtggatatgt taagaaatag tttttgttct 2580 gtatcttaaa acgacgtggt ggaggcattt ggagtgtcgt tttgtattgg agacaatcac 2640 ttctatccct atgtattgga gacaggagac aatatatata actcctatat gggcctaact 2700 ataaattggg cctaacccgg gtaaagcggc actcgtataa tatt 2744 //