ID DQ083764; SV 1; circular; genomic DNA; STD; VRL; 2743 BP. XX AC DQ083764; XX DT 01-JUL-2007 (Rel. 92, Created) DT 01-JUL-2007 (Rel. 92, Last updated, Version 1) XX DE Pepper yellow leaf curl Indonesia virus isolate Bogor, complete genome. XX KW . XX OS Pepper yellow leaf curl Indonesia virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2743 RA Tsai W.S., Shih S.L., Green S.K., Akkermans D., Rauf A.; RT "Molecular characterization of tomato and pepper infecting begomoviruses in RT Indonesia"; RL Unpublished. XX RN [2] RP 1-2743 RA Tsai W.S., Green S.K., Rauf A.; RT ; RL Submitted (02-JUN-2005) to the INSDC. RL Virology, Asian Vegetable Research and Development Center, P. O. Box 42, RL Shanhua, Tainan, Taiwan 741, Republic of China XX DR MD5; 550070543d7bcbde1b55d9327fd52b06. XX FH Key Location/Qualifiers FH FT source 1..2743 FT /organism="Pepper yellow leaf curl Indonesia virus" FT /isolate="Bogor" FT /mol_type="genomic DNA" FT /country="Indonesia:Bogor, Java" FT /isolation_source="diseased pepper" FT /db_xref="taxon:292477" FT gene 134..487 FT /gene="V2" FT CDS 134..487 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:A6XA56" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A6XA56" FT /protein_id="AAY86744.1" FT /translation="MWDPLVHPFPETLHGFRCMLAIKYLQSLEATYSPDTVGGEFVKDL FT ICLLRCKNYAEAFHRYSVVVANVYNTPETKLRESVQSPCCCPHCPRHVLQTKSMGKSAY FT VSETEILQGSKDQ" FT gene 294..1070 FT /gene="CP" FT CDS 294..1070 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="V1" FT /db_xref="GOA:A6XA57" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A6XA57" FT /protein_id="AAY86745.1" FT /translation="MPKRSIDTVSSLPMSITRRRLNYASQYSLPAAAPTAPGMSYKRRA FT WVNRPMYRKPRFYRGRRTSDVPRGCEGPCKVQSFEQRHDVTHTGKVLCVSDVTRGNGIT FT HRVGKRFCVKSVYIIGKVWMDENIKSKNHTNNVMFWLVRDRRPVTTPYGFGELFNMYDN FT EPSTATIKNDLRDRVQVLHRFSATVTGGQYASKEQAIVKRFLRVNNYVVYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDNVTN" FT gene complement(1067..1477) FT /gene="C3" FT CDS complement(1067..1477) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:A6XA58" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A6XA58" FT /protein_id="AAY86746.1" FT /translation="MDMDFRTGEYITAAQAQNGVYIWKVPNPLYFKVLRHCSRGYNTNM FT DYIEVQIQFNHNLRKALEIHKCFLIFHIWTRLRPQIWHFLRVFKNNVIRYLSNIGVVSI FT NNVIRAVNYVLWDVLEQTVYAKQLHIIKFKLY" FT gene complement(1212..1619) FT /gene="C2" FT CDS complement(1212..1619) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:A6XA59" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A6XA59" FT /protein_id="AAY86747.1" FT /translation="MRPSSPSTSHSTQIPQKIQHRLAKKKIIRRRRIDLDCGCSYYLSI FT NCHGYGFSHRGVHHCSSGAEWRLYLEGSKSPLFQGAEALQQRVQHQYGLHRSTNSIQPQ FT PEESAGDSQVFFNLPHLDSFTSSDLAFLKSI" FT gene complement(1519..2607) FT /gene="C1" FT CDS complement(1519..2607) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:A6XA60" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A6XA60" FT /protein_id="AAY86749.1" FT /translation="MPPPRRFKLQNKNYFLTYPHCSLTKEEALEQLKSINTPVNKLFVK FT ICRELHEDGSPHLHVLLQFEGKYVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYM FT DKDGDSIEWGEFQIDGRSARGGQHAVNDVYAQALNCGSKSDALQLIKELAPKDYVLQYH FT NLSVNFDKIFAKPVDTFVSPYPSSSFDQVPEELRQWAGENVKDAAARPWRPISIVIEGE FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDSWYNVIDDVDPHYLKHFKEFMGAQRNW FT QSNTKYGKPIQIKGGIPTIFLCNPGPASSYKEYLAEDKNTALNSWALKNATFVTINEPL FT YSNSTEDTAQTCEEENNPQATN" FT gene complement(2253..2450) FT /gene="C4" FT CDS complement(2253..2450) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A6XA61" FT /protein_id="AAY86748.1" FT /translation="MGALISMCSSNSKGNTSAPTTDSSTWYPQPGQHISIRTFRELSQA FT PMSRRTWTKTVIQSNGENFR" XX SQ Sequence 2743 BP; 740 A; 574 C; 624 G; 805 T; 0 other; accgagtgcc gcgaaatttt ttaaatgtgg tcccacaagc cagccttttg actgaccaat 60 cacactgctt ctgcaaagct tagttagtgg gtcgcccact ataaagatag ggaccaccct 120 ccactatcca aggatgtggg atccgcttgt tcatcctttt cctgaaaccc tacacgggtt 180 tcgatgcatg ctggcgatca agtatctgca aagcttagag gctacgtatt ctcctgatac 240 ggttggaggt gaattcgtga aggatttaat ctgcctgttg cggtgtaaaa attatgccga 300 agcgttccat cgatacagtg tcgtcgttgc caatgtctat aacacgccgg agactaaact 360 acgcgagtca gtacagtctc cctgctgctg cccccactgc cccaggcatg tcttacaaac 420 gaagagcatg ggtaaatcgg cctatgtatc ggaaaccgag attctacagg ggtcgaagga 480 ccagtgatgt tccgcggggt tgtgaaggac cgtgtaaggt ccaatccttt gaacagagac 540 atgacgtaac acatacgggg aaggtccttt gcgtttccga tgtcacaaga ggtaatggta 600 ttacgcacag agttggtaaa agattctgtg tgaaatctgt atatattata ggcaaagtat 660 ggatggacga aaacatcaag tcaaagaacc acactaacaa tgtcatgttt tggcttgttc 720 gtgaccggcg acctgttact acaccgtatg gcttcggcga gttgttcaac atgtatgata 780 atgaacctag tacagcaact atcaagaacg atcttcgtga tcgtgtgcag gtgttacatc 840 gtttctcagc tacagtcact ggtggtcagt acgcaagcaa agaacaagca atcgtgaaga 900 gatttctcag agttaacaac tatgttgttt acaatcatca ggaagcagca aaatatgaaa 960 atcacacaga aaatgcatta ttgctgtata tggcatgtac tcatgcatct aaccctgtat 1020 acgcgacatt gaaaatccgt atttacttct acgacaatgt aacaaattaa taaagcttga 1080 attttattat atgcaactgc ttggcgtaca ctgtctgttc aagtacatcc cataaaacat 1140 aatttaccgc tctaattaca ttgtttattg acacaacgcc tatattggac agatatctaa 1200 ttacattgtt cttaaatact cttaagaaat gccaaatctg aggacgtaaa cgagtccaaa 1260 tgtggaagat taaaaaacac ttgtgaatct ccagcgcttt cctcaggttg tggttgaatt 1320 gaatttgtac ttctatgtag tccatattgg tgttgtaccc tctgctgcag tgcctcagca 1380 ccttgaaata gaggggattt ggaaccttcc aaatatagac gccattctgc gcctgagctg 1440 cagtgatgta ctccccggtg cgaaaatcca tatccatgac agttaatact gaggtaatat 1500 gagcagccgc agtctaagtc aattcgtcgc ctgcggatta ttttcttctt cgcaagtctg 1560 tgctgtatct tctgtggaat ttgagtagag tggctcgttg atggtgacga aggtcgcatt 1620 ttttagtgcc caagagttta atgcagtatt tttgtcctct gcaagatatt ctttatatga 1680 ggaagcagga cctggattgc agaggaagat agtgggaatg ccacctttaa tttgaattgg 1740 tttgccgtac tttgtgttgc tttgccagtt cctctgggcc cccatgaact ctttaaaatg 1800 ctttagatag tgggggtcaa cgtcatcaat gacgttgtac caggagtcat tgttgtatac 1860 cttggggctc aagtcaagat gtccgcaaag ataattatgt gggcctaacg atctagccca 1920 catagttttg cctgtacgac tctcaccttc tatgacaatg ctaatgggcc tccatggccg 1980 cgcagcggca tccttcacat tttcaccagc ccattggcgt agctcctctg gaacttggtc 2040 aaacgacgac gacggatatg gtgagacaaa tgtatctaca ggtttagcaa atattttatc 2100 gaaattaaca cttaaattgt ggtactgtag aacatagtct tttggagcaa gctctttaat 2160 caattgaaga gcatctgact tacttccaca atttagggcc tgcgcgtaaa catcgtttac 2220 tgcgtgctga ccacctcgtg cagatcggcc atctatctga aattctcccc attcgattga 2280 atcaccgtct ttgtccatgt acgccttgac atcggagctt gacttagctc cctgaatgtt 2340 cggatggaaa tgtgctgacc tggttgggga taccaggtcg aagaatctgt tgttggtgca 2400 gacgtatttc ccttcgaatt ggaggagcac atggagatga gggctcccat cttcgtgaag 2460 ttctctacag atcttgacaa acagtttgtt gacaggagtg ttgatggatt ttaattgttc 2520 gagtgcttct tctttggtta gagaacagtg tggatatgtt aagaaatagt ttttgttctg 2580 taacttaaaa cgacgtggtg gaggcatttg gagtgtcgtt ttgtattgga gacaatcact 2640 tctatcccta tgtattggag acaggagaca atatatataa gtgctatatg ggcctaacta 2700 taaattgggc ctaacccggg taaagcggca ctcgtataat att 2743 //