ID DQ079612; SV 1; linear; genomic RNA; STD; VRL; 4988 BP. XX AC DQ079612; XX DT 01-AUG-2005 (Rel. 84, Created) DT 01-AUG-2005 (Rel. 84, Last updated, Version 1) XX DE Barley yellow dwarf virus - PAV isolate PAV TC14 polymerase gene, complete DE cds; polymerase gene, partial cds; and readthrough protein, coat protein, DE and movement protein genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-4988 RA Chain F., Riault G.R., Trottet M., Jacquot E.; RT "Valuation of the durability of the Barley yellow dwarf virus-resistant RT Zhong ZH and TC14 wheat lines"; RL Unpublished. XX RN [2] RP 1-4988 RA Chain F., Riault G.R., Trottet M., Jacquot E.; RT ; RL Submitted (31-MAY-2005) to the INSDC. RL UMR Bio3P, INRA, BP 35327, Le Rheu 35653, France XX DR MD5; 05bc770b74bcc13a863400255ba88f6b. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..4988 FT /organism="Barley yellow dwarf virus PAV" FT /isolate="PAV TC14" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="France" FT /db_xref="taxon:2169986" FT CDS 119..1138 FT /codon_start=1 FT /product="polymerase" FT /note="ORF1" FT /db_xref="GOA:Q45ZY7" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q45ZY7" FT /protein_id="AAZ23541.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYFSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FMKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITEIVKLKNSTLSADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF" FT CDS <1129..2721 FT /codon_start=1 FT /product="polymerase" FT /note="ORF2; translated as extension of ORF1 by ribosomal FT frameshift" FT /db_xref="GOA:Q45ZY6" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q45ZY6" FT /protein_id="AAZ23542.1" FT /translation="GFLEGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQT FT HLGLVYKAPNASLHNALVAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEV FT GYCKTYPAQLLANSYSAGKRAMYHKAIASLKTVPYHQKDANVQAFLKKEKHWMTKDIAP FT RLICPRSKRYNIILGTRLKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIARKWQKFA FT CPVAIGVDASRFDQHVSEQALKWEHGIYNGIFGDSELALVLEHQITNNIKMFVEDKMLR FT FKVRGHRMSGDINTSMGNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFD FT GMYDHFLQYGFNMVTEKPVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSML FT NQSDVKSYMSAVAQCGLVLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERL FT QGRRTYNETPITNHSRMSYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSI FT LLSIPENHSQNEY" FT CDS 2835..4787 FT /codon_start=1 FT /transl_except=(pos:3435..3437,aa:OTHER) FT /product="readthrough protein" FT /note="expressed by a readthrough of stop codon at the end FT of ORF3" FT /db_xref="GOA:Q45ZY5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q45ZY5" FT /protein_id="AAZ23545.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRAVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTSCKQSALGSYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEPKPAPEPTPTPQPT FT PAPQPAPEPTPAPVPKRFFEYIGTPTGTISTRENSDSISVSKLGGQSMQYIENEKCETK FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSINISCEGFQSVDHIGGNEDGYWIGMIAYSNS FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTFDESDVEAKRITRHAETPIR FT SKHILVSERYEEPLPTITNQGLCDVKTPEQEQTLVDEEDRQTVSTEPDVALQEYEAATA FT EIPDAEEDVLPSKEQLSSKPLDTSGNIIPKSKEPEVLGTYQGQNIHPEDVPPLARQRLR FT EAAKAPSTLLYERTPKKSNNFLTRFVEANRSPTTPAAPTVSTTSNMTREQLAEYTRIRK FT SLGLTAAKEYKAQFQ" FT CDS 2835..3437 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:Q45ZZ4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q45ZZ4" FT /protein_id="AAZ23543.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRAVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTSCKQSALGSYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" FT CDS 2878..3339 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q45ZZ3" FT /protein_id="AAZ23544.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL FT RPALSLLNSTPRANNQPWVATLIPSQSAGPPQRSSEPKRLTGRNSRNQR" XX SQ Sequence 4988 BP; 1485 A; 1193 C; 1215 G; 1095 T; 0 other; aagctgttac gtgcttgtaa cacactacac acccgttttg tgttcgggaa gtagttgcga 60 aaacggtccc cttatagcca gacaagctaa gggccaccct tcttacccca ccgccaccat 120 gtttttcgaa atactaatag gagctagcgc taaggcggtc aaagacttta ttagccattg 180 ttactctaga ctaaaatcta tatatttttc atttaaacga tggctaatgg agatatctgg 240 gcaatttaag gcccatgacg cctttgtcaa catgtgcttt gggcacatgg ctgacattga 300 ggacttcgag gcggaactcg ctgaggagtt cgccgagaga gaggatgagg tggaggaggc 360 gaggagcctc ttgaaactgc tggtcgccca aaaatctaaa actggggtga ccgaggcttg 420 gaccgacttc tttatgaagt cgagaggtgg cgtttatgcg ccactttcct gcgagcctac 480 caggcaggag ctagaagtca agagcgagaa gctcgaaaaa cttctagaag aacagcacca 540 attcgaggtg cgagcggcca agaaatacat caaggaaaag ggccgcggct tcatcaactg 600 ctggaacgac ttgcgaagtc gtctcaggtt ggtgaaggac gtcaaggacg aggcgaagga 660 caatgccaga gctgctgcca agattggagc ggaaatgttc gcccccgttg acgtgcagga 720 cctctacagc ttcacagagg tcaagaaggt ggagaccggc ctcatgaagg aggtcgtgaa 780 ggagaaaaac ggcgaagaag agaaacacct cgagcccatc atggaagagg tgaggtctat 840 caaggacacc gccgaagcca gggacgccgc ctccacttgg ataacagaga tagttaagct 900 gaagaactca acgcttagcg cagatgaact gtctcttgcc accatcgccc gctacgttga 960 aaacgtaggg gataaattca aactcgacat tgcaagcaaa acatatctaa agcaagtcgc 1020 atcgatgtct gtaccaatcc caaccaacaa ggacataaaa ttgaagatgg tgctacagag 1080 tcctgaagca cgtgccaggc gggagcgcat ggacgtgctt gactctgtgg gtttttagag 1140 gggctctgta cagcctctgg ttttgagagc ccatttccca ttctcgggct gccagagatt 1200 gcggtcacag acggagcccg acttcgtaag gttagtagta atattagata ccttagccaa 1260 acccacctag gtctagtata taaggcacca aatgcctccc tgcacaacgc gcttgtggca 1320 gtggagagaa gagtttttac agtaggaaag ggggacaaag caatctaccc cccccgccct 1380 gagcatgaca ttttcactga tacgatggat tacttccaga aatccattat agaagaggtg 1440 ggatactgta agacataccc agcgcaactc ctggctaata gctatagtgc aggaaagagg 1500 gccatgtatc acaaagccat tgcatccttg aagactgtcc cttatcacca gaaggatgcc 1560 aatgtgcaag ctttcctgaa gaaggaaaaa cattggatga ccaaggacat cgccccccga 1620 ttgatttgcc cccgcagcaa gcggtacaat atcatcctag gaactcgttt gaagttcaac 1680 gagaagaaga tcatgcacgc tatcgatagt gtgtttgggt cccccactgt gctttctggc 1740 tatgacaact tcaaacaagg aaggatcata gccaggaagt ggcaaaagtt tgcatgcccc 1800 gtcgccatcg gagtggatgc tagccgcttt gaccaacacg tgtcagagca ggcgcttaag 1860 tgggaacacg ggatatacaa tgggatcttc ggagacagcg aactggctct tgtacttgaa 1920 caccaaatca ccaacaacat caagatgttt gttgaagaca aaatgcttag gttcaaggta 1980 agaggccaca gaatgtccgg tgacattaat accagcatgg gaaataagct cataatgtgc 2040 ggcatgatgc acgcatattt caagaagctg ggtgttgaag ctgaactatg taacaacgga 2100 gacgactgtg tcatcatcac tgatagagcc aatgagaagc tctttgatgg catgtacgac 2160 cattttctcc agtatggctt caacatggtg accgaaaaac cagtttacga actggaacaa 2220 ttggagtttt gtcagtcaaa accggtctct attaatggaa agtatagaat ggtcagaagg 2280 cccgatagca taggcaaaga tagcacaaca ctactgagca tgctcaatca atccgacgtc 2340 aagagctaca tgtcggctgt tgctcagtgt ggcttggtgc ttaacgctgg agtacccata 2400 cttgaaagtt tctataaatg cctatatagg agctcggggt acaagaaagt gagtgaggaa 2460 tttattaaaa acgtcatatc gtatggaaca gatgagagac tacaaggtag acgtacctac 2520 aatgaaacac ctatcacaaa ccacagtaga atgtcctact gggaatcatt cggagttgac 2580 cctaagatac agcaaatcgt cgagaggtac tacgacggtc ttacggtaag tgcccaactc 2640 cagagtgtga aggtgacgac tccacatctg caatcaatac tgctttccat accggaaaac 2700 cactcacaaa acgaatatta attaccaaat cttagctggg tttgggatag ggttcatagt 2760 tagtataccc tgtacattag ctctcgcgta ctttatttac aataaagttt cagacaccac 2820 tagagaggtg gtgaatgaat tcagtaggcc gtagaggacc tagacgcgca aatcaaaatg 2880 gcacaagaag gaggcgccgt agagcagttc ggccagtggt tgtggtccaa cccaatcgag 2940 caggacccag acgacgaaat ggtcgacgca agggaagagg aggggcaaat cctgtattta 3000 gaccaacagg cgggactgag gtattcgtat tctcagtcga caaccttaaa gccaactctt 3060 ccggggcaat caaattcggc cccagtctat cgcaatgccc agcgctttca gacggaatac 3120 ttaagtccta ccaccgttac aagatcacaa gtatccgtgt tgagtttaag tcacacgcgt 3180 ccgcaactac ggccggcgct atctttattg aactcgacac ctcgtgcaaa caatcagccc 3240 tgggtagcta cattaattcc ttcacaatca gcaggaccgc ctcaaaggtc ttcagagccg 3300 aagcgattaa cgggaaggaa ttccaggaat caacgataga ccagttctgg atgctctaca 3360 aggccaatgg aaccaccact gacacggcag gacaattcat tatcacgatg agtgtcagtt 3420 taatgacggc caaataggta gactcctcaa caccggaacc gaaacctgca ccagaaccca 3480 caccaacccc acagccaacg ccagctccac agcccgcacc tgaaccgact cctgcaccag 3540 tccccaaaag attctttgag tatatcggca ctccaaccgg tacaatctca actagagaga 3600 actctgacag tatttctgtc agcaagctcg gtggacaatc catgcagtac atagagaatg 3660 agaaatgtga aacaaaggtt attgactcct tctggagcac taacaacaac gtgtctgcac 3720 aagcagcctt cgtttaccca gtgccagaag gatcatacag cataaacatt tcgtgcgaag 3780 gctttcaatc tgttgaccac atcgggggca acgaggatgg atattggatt ggtatgattg 3840 cctactccaa ttcgtcagga gacaattggg gtgtaggcaa ttacaaaggg tgcagtttca 3900 agaacttctt ggcaaccaat acttggagac caggccacaa agatctcaag ttgaatgatt 3960 gccagttcac agatggacaa atagttgaaa gggatgccgt gatgtctttt cacgtcgaag 4020 ctacaggtac tgatgcctgt ttctacctaa tggctcccaa aacaatgaaa actgacaagt 4080 acaactatgt tgtctcttac ggagggtaca caaacaaacg aatggaattt ggtaccatat 4140 ctgtgacatt cgatgaatcc gatgttgagg caaaacgcat aacaaggcac gctgaaactc 4200 ccatccgctc caagcacatc cttgtgtccg agcggtatga ggagccattg cccaccataa 4260 ccaatcaagg cttgtgtgat gtgaaaactc ccgagcaaga acaaacattg gtggatgaag 4320 aagacagaca aactgtttcc actgaacctg atgtagcact ccaggaatac gaagctgcca 4380 cagctgaaat tcctgatgct gaagaggatg ttttgccctc caaggaacag ctgtcctcta 4440 agccattgga cacgtctggc aatataatac ctaaatccaa ggaacctgaa gtacttggaa 4500 cataccaggg tcagaacatt caccctgaag acgtgccacc gctagcgcgg cagagattgc 4560 gtgaagccgc gaaagcaccc tccacgttgt tatatgagcg aacgccgaag aagagcaaca 4620 acttcttgac tcgttttgtg gaggcgaata ggtcccctac cactcccgct gccccaacag 4680 tgtcaactac atcaaacatg acaagggaac agcttgcgga gtacactaga attaggaaat 4740 cccttgggct cacagcagcg aaggaataca aggcgcaatt tcagtgaagg caacaccact 4800 agcacaaatc ggatcctggg aaacaggcag aactacggtt cataagctcg ggtaggctgt 4860 caacctaccg ccgcatcgca ttgtgtttgg ccgatgaatg acctccacgt tatcgccgtc 4920 tgtatttttg ctttaactgt gttaacaggg ttaggcgcgg taatcggctg ttgtgccggt 4980 tgtcttct 4988 //