ID   DQ067597; SV 1; linear; genomic RNA; STD; VRL; 1371 BP.
XX
AC   DQ067597;
XX
DT   20-JUN-2005 (Rel. 84, Created)
DT   20-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Cocksfoot streak virus isolate UK-1-04 GHCP630A HC-Pro protein (HC-Pro)
DE   gene, partial cds.
XX
KW   .
XX
OS   Cocksfoot streak virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1371
RA   Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT   "The dynamics of selection pressures acting on a viral suppressor of RNA
RT   silencing in the field";
RL   Unpublished.
XX
RN   [2]
RP   1-1371
RA   Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT   ;
RL   Submitted (19-MAY-2005) to the INSDC.
RL   Plant Virology, Nerc/Centre For Ecology and Hydrology (Ceh), Mansfield
RL   Road, Oxford OX1 3SR, Uk
XX
DR   MD5; 348a5852a16f4f39608f43f14f285440.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1371
FT                   /organism="Cocksfoot streak virus"
FT                   /isolate="UK-1-04 GHCP630A"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:England"
FT                   /isolation_source="Wytham Woods Yellow Ant Reserve,
FT                   Oxfordshire"
FT                   /db_xref="taxon:192452"
FT   gene            <1..>1371
FT                   /gene="HC-Pro"
FT   CDS             <1..>1371
FT                   /codon_start=1
FT                   /gene="HC-Pro"
FT                   /product="HC-Pro protein"
FT                   /note="helper component proteinase"
FT                   /db_xref="GOA:Q4PLG0"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:Q4PLG0"
FT                   /protein_id="AAY79373.1"
FT                   /translation="SQGGEFWAGFNETFVAKRKDPAHTGECRARDTVRQCGEAAGILWQ
FT                   GMFPCFKITCGACQDQIGITADDIVKGELIDNLFDASANLERLRIQPSMSSTLKAVATK
FT                   LKPAQDHVQICQQIIQAIGDDNDGPARHLRLATEKFITLQASDAEKCSDISKNLLLVAN
FT                   FIKNRRDGLVRGDVKEFKNKISNKAHVNPVLMCDNQLDANGNFVWGERSHHAKRFFDNF
FT                   YTQVNVADDYDAHVLRKHPRGTRRLAIDRLILQLDLKALQEHVVGFPIEREPVSSSCIS
FT                   KKYGAFVFTCSCITLDDKTPLYSDIIMPTKQHLVIGNSGDSKLIDFPETYRDKLWIARD
FT                   GYCYVNIFLAMLVNINEVDAKNFIKTIRDRVIPQLKEWPTMRDLAASLHMLTVLFPDTR
FT                   QAELPRILVDHKNKMMHVVDSYGSSDIGFHILKAGTVSQLLPFMFDSTEGEMKNYQVG"
XX
SQ   Sequence 1371 BP; 419 A; 289 C; 319 G; 344 T; 0 other;
     tctcaggggg gggagttttg ggctggcttc aatgagacat ttgttgccaa aaggaaagat        60
     cctgcacata cgggtgagtg tagagctcgc gacactgtga gacaatgtgg tgaagcagct       120
     ggcattcttt ggcaagggat gtttccgtgc ttcaagataa cgtgtggagc ttgtcaagat       180
     cagatcggaa ttacagctga cgatatcgtc aaaggtgagc tcatcgacaa tttgtttgac       240
     gcatctgcga accttgagcg tttacgaatc caacccagca tgtcaagcac tctgaaagcc       300
     gtcgcaacta aactcaaacc agctcaggat catgtgcaaa tttgccagca aattatccag       360
     gcaattggtg atgacaacga tggaccagcg agacatctgc gcttagctac tgagaaattc       420
     ataaccttgc aagcatcaga cgccgagaag tgcagtgaca tttcaaagaa ccttctgtta       480
     gtcgcaaact tcattaagaa cagaagagat ggtcttgtac gtggcgatgt caaagagttc       540
     aagaacaaga tatccaacaa agcgcatgtt aaccctgtcc tcatgtgtga taatcaacta       600
     gatgccaacg ggaactttgt atggggggaa agaagtcatc atgcaaaacg attctttgac       660
     aatttctata cgcaagtgaa cgtagctgat gattacgacg cgcatgtctt gagaaaacac       720
     ccgagaggca ctcgcagatt agcaattgat cgattgattc tgcaactgga cttgaaggct       780
     cttcaggaac acgttgtggg attcccaatt gagcgggaac ctgtatcttc atcatgcata       840
     agcaagaaat acggagcctt tgtgttcacg tgcagttgca tcacacttga tgataaaaca       900
     ccactctact cagatatcat catgcccacg aagcaacact tagttatcgg aaactcagga       960
     gattcaaagc tcattgattt ccctgagaca taccgagata aattgtggat cgcaagagat      1020
     gggtactgtt acgttaatat tttccttgcc atgttggtga atattaatga agttgatgcc      1080
     aagaatttca ttaagacaat tcgagatcgc gtgataccac agctgaagga atggccaacc      1140
     atgagagatc tggcagctag tttacatatg ttaacagtct tgttccctga tacaagacag      1200
     gccgaactac cacgcatact tgttgatcac aaaaacaaaa tgatgcatgt cgtggactca      1260
     tacggctcaa gtgacattgg atttcatata ctcaaagctg gaacagtcag ccaattgttg      1320
     ccattcatgt ttgactcaac cgagggagag atgaaaaatt accaagtcgg c               1371
//