ID   DQ067595; SV 1; linear; genomic RNA; STD; VRL; 1371 BP.
XX
AC   DQ067595;
XX
DT   20-JUN-2005 (Rel. 84, Created)
DT   20-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Cocksfoot streak virus isolate UK-1-04 GHCP628B HC-Pro protein (HC-Pro)
DE   gene, partial cds.
XX
KW   .
XX
OS   Cocksfoot streak virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1371
RA   Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT   "The dynamics of selection pressures acting on a viral suppressor of RNA
RT   silencing in the field";
RL   Unpublished.
XX
RN   [2]
RP   1-1371
RA   Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT   ;
RL   Submitted (19-MAY-2005) to the INSDC.
RL   Plant Virology, Nerc/Centre For Ecology and Hydrology (Ceh), Mansfield
RL   Road, Oxford OX1 3SR, Uk
XX
DR   MD5; 467c7f1be31f9b2b5df6dac50b13a702.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1371
FT                   /organism="Cocksfoot streak virus"
FT                   /isolate="UK-1-04 GHCP628B"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:England"
FT                   /isolation_source="Wytham Woods Yellow Ant Reserve,
FT                   Oxfordshire"
FT                   /db_xref="taxon:192452"
FT   gene            <1..>1371
FT                   /gene="HC-Pro"
FT   CDS             <1..>1371
FT                   /codon_start=1
FT                   /gene="HC-Pro"
FT                   /product="HC-Pro protein"
FT                   /note="helper component proteinase"
FT                   /db_xref="GOA:Q4PLG2"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:Q4PLG2"
FT                   /protein_id="AAY79371.1"
FT                   /translation="SQGEEFWAGFNETFVAKRKDPKHTGECRARDTVRQCGEAAGILWQ
FT                   GMFPCFKITCGACQDQIGITADDIVKGELIDNLFEASANLERLRIQPSMSGTLNALATK
FT                   LKPAQDHVQICQQIIQAIGDDNDGPARHLRLATEKFITLQASDAEKCNDISKNLLLVAN
FT                   FIKNRRDGLVRGDVREFKNKISNKAHVNPVLMCDNQLDANGNFVWGERSHHAKRFFDNF
FT                   YTQVNVADDYDAHVLRKHPRGTRRLAIDRLILQLDLKALQEHVVGFPIERAPITSSCIS
FT                   KKYGAFVFTCSCITLDDKTPLYSDIIMPTKQHLVIGNSGDSKLIDFPETYRDKLWIARD
FT                   GYCYVNIFLAMLVNINEVDAKNFTKTIRDRVIPQLKEWPTMRDLAASLHMLTVLFPDTR
FT                   QAELPRILVDHKNKMMHVVDSYGSSDIGFHILKAGTVSQLLPFMFDSTEGEMKNYQVG"
XX
SQ   Sequence 1371 BP; 424 A; 284 C; 318 G; 345 T; 0 other;
     tcgcagggtg aggagttttg ggcaggcttc aacgaaacat ttgttgccaa gaggaaagat        60
     cccaaacata cgggcgaatg tagagctcgt gatactgtga gacaatgcgg tgaggcagca       120
     ggcatccttt ggcaaggtat gtttccgtgc ttcaagataa catgtggagc ttgtcaagat       180
     cagattggaa taacagcaga cgacatcgtt aaaggtgagc tcattgacaa tttgtttgaa       240
     gcatcagcaa accttgagcg cttacgaatt caacccagca tgtcaggcac tctcaatgct       300
     cttgcaacta aactcaagcc agctcaggat catgtgcaaa tttgccagca aataattcag       360
     gcgattggtg atgacaacga tggaccagca agacatctgc gcttagccac tgaaaaattc       420
     ataactttgc aagcgtcaga tgccgagaag tgcaatgata tttcaaagaa ccttctgtta       480
     gttgcgaact ttatcaagaa cagaagagat ggtcttgtgc gcggcgacgt aagagagttc       540
     aagaacaaga tatctaacaa agcgcacgtt aaccctgttc ttatgtgtga caatcaacta       600
     gatgctaatg gaaattttgt atggggggaa aggagtcatc atgcaaaacg gttcttcgat       660
     aacttctaca cgcaagtcaa cgtagctgat gattatgatg cgcacgtttt gaggaagcat       720
     ccgagaggca ctcgcagatt agcaattgat cgcttaattc tacaactgga cttgaaggct       780
     cttcaagaac atgtggtggg attcccaatc gagcgagcac ccataacttc atcgtgcata       840
     agcaagaaat atggtgcctt tgtgttcaca tgcagttgca tcacacttga tgacaagaca       900
     ccactctatt cagatatcat aatgcccacg aagcagcact tagttattgg aaactcaggg       960
     gattcaaaac tcatcgactt tcctgagaca tatcgagaca aattgtggat cgcaagagat      1020
     gggtattgct atgtcaacat tttccttgct atgttggtga acatcaatga agttgatgcc      1080
     aagaacttta ccaagacgat tcgagatcgc gtgataccac aactgaaaga atggccaact      1140
     atgagagatc tggcagcgag tttacatatg ttaacagtct tgttccctga cacaagacaa      1200
     gctgaactac cacgcatact tgttgaccac aagaacaaaa tgatgcatgt tgtggattcg      1260
     tatggctcaa gtgacattgg attccatata ctcaaagctg gaacggtcag tcaattgctg      1320
     ccgttcatgt ttgactcaac tgagggcgaa atgaaaaact accaagtcgg t               1371
//