ID   DQ067593; SV 1; linear; genomic RNA; STD; VRL; 1371 BP.
XX
AC   DQ067593;
XX
DT   20-JUN-2005 (Rel. 84, Created)
DT   20-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Cocksfoot streak virus isolate UK-1-04 GHCP619C HC-Pro protein (HC-Pro)
DE   gene, partial cds.
XX
KW   .
XX
OS   Cocksfoot streak virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1371
RA   Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT   "The dynamics of selection pressures acting on a viral suppressor of RNA
RT   silencing in the field";
RL   Unpublished.
XX
RN   [2]
RP   1-1371
RA   Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT   ;
RL   Submitted (19-MAY-2005) to the INSDC.
RL   Plant Virology, Nerc/Centre For Ecology and Hydrology (Ceh), Mansfield
RL   Road, Oxford OX1 3SR, Uk
XX
DR   MD5; 1a9692ba8a361eadfeeba699ca59ff6f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1371
FT                   /organism="Cocksfoot streak virus"
FT                   /isolate="UK-1-04 GHCP619C"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:England"
FT                   /isolation_source="Wytham Woods Yellow Ant Reserve,
FT                   Oxfordshire"
FT                   /db_xref="taxon:192452"
FT   gene            <1..>1371
FT                   /gene="HC-Pro"
FT   CDS             <1..>1371
FT                   /codon_start=1
FT                   /gene="HC-Pro"
FT                   /product="HC-Pro protein"
FT                   /note="helper component proteinase"
FT                   /db_xref="GOA:Q4PLG4"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:Q4PLG4"
FT                   /protein_id="AAY79369.1"
FT                   /translation="SQGEEFWAGFNETFVAKRKDPTHTGECRARDTVRQCGEAAGILWQ
FT                   GMFPCFKITCGACQDQIGITADDIVKGELIDNLFEASANLERLRIQPSMSSTLKAVATK
FT                   LKPAQDHVQICQQIIQAIGDDNDGPARHLRLATEKFITLQASDAEKCSDISKNLLLVAN
FT                   FIKNRRDGLVRGDVREFKNKISNKAHVNPVLMCDNQLDANGNFVWGERSHHAKRFFDNF
FT                   YTQVNVADDYDVHVLRKHPGGTRRLAIDRLILQLDLKALQEHVVGFPIERVPITSSCIS
FT                   KKYGAFVFTCSCITLDDKTPLYSDIIMPTKQHLVIGNSGDSKLIDFPETYRDKLWIARD
FT                   GYCYVNIFLAMLVNINEVDAKNFAKTIRDRVIPQLKEWPTMRDLAASLHMLTVLFPDTR
FT                   QAELPRILVDHNNKMMHVVDSYGSSDIGFHILKAGTVSQLLPLMFDSTEGEMKNYQVG"
XX
SQ   Sequence 1371 BP; 414 A; 279 C; 329 G; 349 T; 0 other;
     tcacagggtg aagagttctg ggcgggcttt aatgagacat ttgttgccaa aaggaaagat        60
     cctacgcata cgggtgagtg tagagctcgc gatactgtga gacaatgcgg tgaagcagct       120
     ggtattcttt ggcaagggat gtttccgtgc ttcaagataa cgtgtggagc ttgtcaagat       180
     cagatcggaa tcacagctga cgacattgtc aaaggtgaac tcatcgacaa tttgtttgaa       240
     gcatctgcaa accttgagcg tttacgaatt caacccagca tgtcaagcac tcttaaagcc       300
     gtcgcaacta aactcaaacc agctcaggat catgtgcaaa tttgccagca aataattcag       360
     gcgattggtg atgataacga tgggccggcg agacatctgc gcttagccac tgagaagttc       420
     ataacattgc aagcgtcaga cgctgagaag tgcagtgaca tttcaaagaa ccttctgtta       480
     gttgcaaact tcattaaaaa cagaagagat ggccttgtgc gtggcgacgt tagagaattt       540
     aagaacaaga tatccaacaa agcgcatgtt aaccctgttc tcatgtgtga taatcaacta       600
     gacgccaatg gaaattttgt atggggggaa agaagtcatc atgcaaaacg gttctttgac       660
     aatttctaca cgcaagtgaa tgtagctgat gattatgacg tgcatgtttt gaggaaacac       720
     ccgggaggca ctcgcagatt ggcaattgat cgcttgatcc tacagctgga tttgaaggct       780
     cttcaagaac acgtggtggg attcccaatt gagcgagtac ctataacttc atcatgcata       840
     agcaagaagt atggagcttt tgtgttcaca tgtagttgta tcacgcttga tgataaaacg       900
     ccactctatt cagatatcat catgcccaca aagcaacact tagtgattgg gaactcagga       960
     gattcgaagc tcattgattt ccctgaaaca taccgagaca aattgtggat cgcgagagat      1020
     gggtactgct acgtcaacat tttccttgct atgttggtga atatcaatga agttgatgcc      1080
     aagaatttcg ccaaaacaat tcgagatcgc gtgataccac agctgaagga atggccaacc      1140
     atgagagacc tggcagcgag tttacatatg ttaacagtct tgtttcctga tacaagacag      1200
     gctgagctac cacgcatact tgtcgaccac aacaacaaga tgatgcatgt cgtggattcg      1260
     tatggctcga gtgacattgg attccatata ctcaaagctg gaacggttag tcaattgttg      1320
     ccactcatgt ttgactcaac cgagggcgaa atgaaaaact accaagtagg a               1371
//