ID   DQ067589; SV 1; linear; genomic RNA; STD; VRL; 1371 BP.
XX
AC   DQ067589;
XX
DT   20-JUN-2005 (Rel. 84, Created)
DT   20-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Cocksfoot streak virus isolate UK-1-04 FHCP54B HC-Pro protein (HC-Pro)
DE   gene, partial cds.
XX
KW   .
XX
OS   Cocksfoot streak virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1371
RA   Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT   "The dynamics of selection pressures acting on a viral suppressor of RNA
RT   silencing in the field";
RL   Unpublished.
XX
RN   [2]
RP   1-1371
RA   Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT   ;
RL   Submitted (19-MAY-2005) to the INSDC.
RL   Plant Virology, Nerc/Centre For Ecology and Hydrology (Ceh), Mansfield
RL   Road, Oxford OX1 3SR, Uk
XX
DR   MD5; 666d11cb29093d00046a3fb6852af68e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1371
FT                   /organism="Cocksfoot streak virus"
FT                   /isolate="UK-1-04 FHCP54B"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:England"
FT                   /isolation_source="Wytham Woods Yellow Ant Reserve,
FT                   Oxfordshire"
FT                   /db_xref="taxon:192452"
FT   gene            <1..>1371
FT                   /gene="HC-Pro"
FT   CDS             <1..>1371
FT                   /codon_start=1
FT                   /gene="HC-Pro"
FT                   /product="HC-Pro protein"
FT                   /note="helper component proteinase"
FT                   /db_xref="GOA:Q4PLG8"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:Q4PLG8"
FT                   /protein_id="AAY79365.1"
FT                   /translation="SQGEEFWAGFNETFVTRRKDATHTGECRARDTVRQRGEAAGILWQ
FT                   GMFPCFKITCGACQDQIGVTADDIVKGELIDNLFEASANLERLRIQPGMSSTLKAVATK
FT                   LKPAQDHVQICQQIIQAIGDDNDGPARHLRLATEKFITLQASDAEKCSDISKNLLLVAN
FT                   FIKNRRDGLVRGDVKEFKNKISNKAHVNPVLMCDNQLDANGNFVWGERSHHAKRFFDNF
FT                   YTQVNVADDYDAHVLRKHPRGTRRLAIDRLILQLDLKALQEHVVGFPIERVPVTSSCIS
FT                   KKYGAFVFTCSCITLDDKTPLYSDIIMPTKQHLVIGNSGDSKLIDFPETYRDKLWIARD
FT                   GYCYVNIFLAMLVNINEVDAKNFTKTIRDRVIPQLKEWPTMRDLAASLHMLTVLFPDTR
FT                   QAELPRILVDHKNKMMHVVDSYGSSDIGFHILKAGTVSQLVPFMFDSTEGEVKNYQVG"
XX
SQ   Sequence 1371 BP; 415 A; 281 C; 331 G; 344 T; 0 other;
     tcgcaggggg aggagttttg ggcgggcttc aatgaaacgt ttgtcactag aaggaaagat        60
     gctacgcata cgggtgagtg tagagctcgt gacactgtga gacaacgcgg tgaagcagct       120
     ggcattcttt ggcaagggat gtttccgtgc ttcaagataa cgtgtggagc ttgtcaagat       180
     cagatcggag ttacagctga cgacattgtc aaaggtgaac tcatcgacaa tttatttgaa       240
     gcatctgcaa atcttgagcg tttacgaatt caacccggca tgtcaagcac ccttaaagcc       300
     gtcgcaacca aactcaaacc agctcaggat catgtgcaaa tttgccagca aataatccag       360
     gcgattggtg acgacaatga cgggccagcg agacatctgc gcttagccac tgagaaattc       420
     ataactttgc aagcatcaga cgccgagaag tgcagtgata tttcaaagaa tcttctgtta       480
     gttgcgaact tcattaagaa cagaagagat ggtctcgtac gcggcgacgt taaagagttc       540
     aagaacaaga tatccaacaa agcgcatgtt aaccctgttc tcatgtgtga caatcaacta       600
     gatgctaacg gaaactttgt atggggggaa agaagtcatc acgcgaaacg gttctttgat       660
     aatttctata cgcaagtgaa cgtagctgat gattacgacg cgcatgtttt gaggaaacac       720
     ccgagaggca ctcgcaggtt agcaattgac cgcttgattc tacagctgga tttgaaggct       780
     cttcaggaac acgtggtagg atttccaatt gaacgagtac ccgtaacttc atcatgcata       840
     agcaagaaat acggagcttt tgtattcaca tgcagttgta tcacacttga tgataaaaca       900
     ccactctact cagatatcat catgcccacg aagcaacact tagtaattgg aaactcaggg       960
     gattcgaagc tcatcgattt tcctgagaca taccgagata aattgtggat tgcaagagat      1020
     gggtactgct atgttaatat tttcctcgcc atgttggtaa atattaatga agttgatgcc      1080
     aagaacttca ccaagacaat tcgagatcgc gtgataccac agctgaagga atggccaacc      1140
     atgagagatc tggcagcgag tttgcatatg ttaacagtct tgttccctga cacaagacag      1200
     gccgaattac cacgcatact tgttgatcac aaaaacaaaa tgatgcatgt cgtggattca      1260
     tatggctcga gtgacattgg attccatata cttaaagctg gaacagtcag tcaattggtg      1320
     ccgtttatgt ttgactcaac ggagggtgag gtgaaaaatt accaggtggg c               1371
//