ID   DQ067587; SV 1; linear; genomic RNA; STD; VRL; 1371 BP.
XX
AC   DQ067587;
XX
DT   20-JUN-2005 (Rel. 84, Created)
DT   20-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Cocksfoot streak virus isolate UK-1-04 FHCP36C HC-Pro protein (HC-Pro)
DE   gene, partial cds.
XX
KW   .
XX
OS   Cocksfoot streak virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1371
RA   Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT   "The dynamics of selection pressures acting on a viral suppressor of RNA
RT   silencing in the field";
RL   Unpublished.
XX
RN   [2]
RP   1-1371
RA   Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT   ;
RL   Submitted (19-MAY-2005) to the INSDC.
RL   Plant Virology, Nerc/Centre For Ecology and Hydrology (Ceh), Mansfield
RL   Road, Oxford OX1 3SR, Uk
XX
DR   MD5; a50c329f1f2656e170c37d14b16bf80e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1371
FT                   /organism="Cocksfoot streak virus"
FT                   /isolate="UK-1-04 FHCP36C"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:England"
FT                   /isolation_source="Wytham Woods Yellow Ant Reserve,
FT                   Oxfordshire"
FT                   /db_xref="taxon:192452"
FT   gene            <1..>1371
FT                   /gene="HC-Pro"
FT   CDS             <1..>1371
FT                   /codon_start=1
FT                   /gene="HC-Pro"
FT                   /product="HC-Pro protein"
FT                   /note="helper component proteinase"
FT                   /db_xref="GOA:Q4PLH0"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:Q4PLH0"
FT                   /protein_id="AAY79363.1"
FT                   /translation="SQGEEFWAGFNETFVTKRKDPTHTGECRARDTVRQCGEAAGILWQ
FT                   GMFPCFKITCGACQDQIGITADDIVKGELIDNLFEASANLERLRIQPSMSSTLKAVATK
FT                   LKPAQDHVQICQQIIQAIGDDNDGPARHLRLATEKFITLQASDAEKCSDISKNLLLVAN
FT                   FIKNRRDGLVRGDVKEFKNKISNKAHVNPVLMCDNQLDANGNFVWGERSHHAKRFFDNF
FT                   YTQVNVADDYDAHVLRKHPRGTRRLAIDRLILQLDLKALQEHVVGFPIERVPITSSCIS
FT                   KKYGAFVFTCSCITLDDKTPLYSDIIMPTKQHLVIGNSGDSKLIDFPETYRDKLWIARD
FT                   GYCYVNIFLAMLVNINEVDAKNFTKTIRDRVIPQLKEWPTMRDLAASLHMLTVLFPDTR
FT                   QAELPRILVDHKNKMMHVVDSYGSSDIGFHILKAGTVSQLLPFMFDSTEGEMKNYQVG"
XX
SQ   Sequence 1371 BP; 427 A; 278 C; 316 G; 350 T; 0 other;
     tcgcaagggg aagaattttg ggccggcttc aatgagacat ttgtcaccaa aaggaaagat        60
     cctacgcata cgggtgagtg tagagctcgc gatactgtga gacaatgcgg tgaagcagct       120
     ggcattcttt ggcaagggat gtttccgtgc ttcaagataa cgtgtggagc ttgtcaagat       180
     cagatcggaa tcacagccga cgacattgtc aaaggtgaac tcatcgacaa tttgtttgaa       240
     gcatctgcaa atcttgagcg tttacgaatt caacctagta tgtcaagcac tcttaaagcc       300
     gtcgcaacta aactcaaacc agctcaggat catgtacaaa tttgccagca aataattcag       360
     gcgattggtg acgataacga tgggccagcg agacatctgc gcttagccac tgagaaattc       420
     ataacattgc aagcatcaga cgccgagaag tgcagtgata tttcaaagaa ccttctgtta       480
     gttgcgaatt tcattaagaa cagaagagat ggtcttgtac gtggcgacgt taaagagttc       540
     aagaataaga tatccaacaa agcgcatgtt aaccctgttc tcatgtgtga caatcaacta       600
     gacgccaacg gaaactttgt atggggggaa agaagtcatc acgcgaaacg gttctttgac       660
     aatttctata cgcaagtgaa cgtagctgat gattacgacg cgcatgtttt gagaaaacac       720
     ccaagaggca ctcgcagatt agcaattgat cgcttgattc tacagctaga tttaaaggct       780
     cttcaggaac atgtggtggg atttccaatc gaacgagtac ctataacttc atcatgcata       840
     agcaagaaat acggagcctt tgtgttcaca tgcagttgta ttacacttga tgataaaaca       900
     ccactctact cagatatcat catgcccaca aagcaacatt tagtgattgg gaactcaggg       960
     gattcaaagc tcatcgattt ccctgagaca tatcgagaca aattgtggat cgcaagagat      1020
     gggtactgct atgttaatat tttccttgcc atgttggtga atattaatga agttgatgcc      1080
     aagaacttca ccaagacaat tcgcgatcgc gtgataccac agctgaagga atggccaacc      1140
     atgagagacc tggcagcgag tttacacatg ttaacagtct tgttccctga tacaagacag      1200
     gccgaactac cacgcatact tgttgatcac aaaaacaaaa tgatgcatgt cgtggattcg      1260
     tatggttcga gtgacattgg gttccatata cttaaagctg ggacagtcag tcaattgttg      1320
     ccatttatgt ttgattcaac cgagggggaa atgaaaaatt atcaagtcgg a               1371
//