ID DQ058829; SV 1; linear; mRNA; STD; VRL; 7427 BP. XX AC DQ058829; XX DT 31-JUL-2006 (Rel. 88, Created) DT 26-AUG-2006 (Rel. 88, Last updated, Version 2) XX DE Sapovirus Ehime1107/2002/JP, complete genome. XX KW . XX OS Ehime virus OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Caliciviridae; Sapovirus; Sapporo virus. XX RN [1] RP 1-7427 RX PUBMED; 16485479. RA Hansman G.S., Takeda N., Oka T., Oseto M., Hedlund K.O., Katayama K.; RT "Intergenogroup recombination in sapoviruses"; RL Emerg. Infect. Dis. 11(12):1916-1920(2005). XX RN [2] RP 1-7427 RA Hansman G.S.; RT ; RL Submitted (12-MAY-2005) to the INSDC. RL Virology II, NIID, Tokyo, Japan XX DR MD5; 9062ee762be50a5142b75ec4e808c4d3. DR EuropePMC; PMC1865854; 17267629. DR EuropePMC; PMC1933329; 17459935. DR EuropePMC; PMC2600344; 18598655. DR EuropePMC; PMC2725984; 17553282. DR EuropePMC; PMC2738451; 18044044. DR EuropePMC; PMC2744225; 19624925. DR EuropePMC; PMC2795755; 19961620. DR EuropePMC; PMC2851512; 18258001. DR EuropePMC; PMC3291391; 16494732. DR EuropePMC; PMC3321905; 20587209. DR EuropePMC; PMC3367643; 16485479. DR EuropePMC; PMC3433708; 22973264. DR EuropePMC; PMC4284302; 25567221. DR EuropePMC; PMC4498750; 26161646. DR EuropePMC; PMC4859703; 26937032. DR EuropePMC; PMC5035092; 27661997. XX FH Key Location/Qualifiers FH FT source 1..7427 FT /organism="Ehime virus" FT /isolate="Ehime1107" FT /mol_type="mRNA" FT /country="Japan:Ehime" FT /db_xref="taxon:2849733" FT CDS 14..6829 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF1; contains capsid protein" FT /db_xref="GOA:Q0R5W5" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:Q0R5W5" FT /protein_id="AAY98785.1" FT /translation="MASKPFYPILFNRKVEYSVLRSAHLRVSGREQMFETIAELDSHVE FT TVVARLWRDNLRRSLVATPTFTEEGLLDSFLSKPPVDINPDTTFRELFGVDPHEQFPLS FT IHDLAKLQGELVEAARNPGHILRRHYSTDSLTALINKITKFVPVQATLQEMQARRAFER FT ERADLFKELPHVEPDVGHQQKSYFYAMWRQVVKKGKEFFIPLVKCTSWRKKFTEPAEIV FT RQVLVHFCEGMRSQFSTNANYINLSLIAKMRPTVLTMIFQQHKNTYRGWLATVTALIEV FT YSNLFQDMRDTAVSAVSAVTLVFETIKDFINNVIDLVKSTFRAQGPTPCGWAAIAAGAL FT LILMKLSGCSNTASYWHRLLKVCGGVTTLAAAARAVVWVRDIIMEADGKSRLKKYMART FT AALLELAASRDVNGTDELKRLLDCFTQLIEEGTELIQEFGTSPLAGLARSYVSELESAA FT NSIRSTILLDTPRKTPVAIILTGPPGIGKTRLAQHLAAGFGKVSNFSVTLDHHDSYTGN FT EVAIWDEFDVDTQGKFVETMIGIVNTAPYPLNCDRVENKGKVFTSDYVICTSNYPTSVL FT PENPRAGAFYRRVITVDVSSPSIDDWKKRNPGKKPPVDLYKGDFSHLRLSVRPFLGYNP FT EGDTLDGVRVKPTTTSVDGLSRLMETKFKEQGNEQRNIWITCPRDLVAPAASGLKSYMA FT ANRALAQVFQEPSSQDIGETCTSRVYVSCNNPPPTFIGRVVKITAINPWDASLANSMLS FT MFETSTHIPASVQREIMYRVWDPLVHLQSREPNTQMLPYINRVVPVATAFDFIRGLRHH FT LGLCSVKGMWRAYQGWTSSNSILEFLSKHMADVNFPHNPECTVFRAPDGDVIFYTFGSY FT ACFVSPARVPFVGDPPKNVHSNITRNMTWVETLRLLAETVTECLAHFGPFLLMLHNVSY FT LTARSSRDEEAKGKTKHGRGAKHSRRGGVSLSDDEYDEWRDLVRDWRQDMTVSEFVELR FT ERFALGMDSEDVQRYRAWLELRAMRMGAGAYQHATIIGRGGVQDTIIRTQPMRAPRAPR FT SQGYDEEAPTPIVVFTSGDEHIGYGCHLGNGVVVTVTHVASAADQVEGQEFTIRKTEGE FT TTWVNTNLGHLPHYQLGEGAPVYYSARLHPVTTIAEGTYETPNITVQGYHLRILNGYPT FT KRGDCGTPYFDACRRLVGLHAATSTNGETKLAQRVTKTSRVENAFAWKGLAVIRGPDCG FT GMPTGTRYHRSPAWPETIEGETHAPAPFGSGDSRYSFSQVEMLVNGLKPYSEPTPGIPP FT ALLQRAATHTRTYLETIIGTHRSPNLTFGEACALLERTTSCGPFVAGQKGDYWDEDKQC FT YTGVLADHLAKAWDAANRGVAPQNAYKLALKDELRPIDKNAQGKRRLLWGCDAGATLVA FT TAAFKGVATRLQAVAPMTPVGVGINMDSYQVEVLNESLKGGVLYCLDYSKWDSTQHPAV FT TASSLSILERLSEATPITTSAVELLSSPARGHLNDIIFVTKSGLPSGMPFTSVINSLNH FT MTYFAAAVLRAYEQHGAPYTGNVFQVETVHTYGDDCLYSVCPATASIFQSVLANLTSFG FT LKPTAADKSECIAPTHTPVFLKRTLTCTPRGVRGLLDISSIKRQFLWIKANRTTDINSP FT PAYDREARSVQLENALAYASQHGHSVFEEVAKLARHTAKAEGLVLTNVNYDQALATYES FT WFIGGAGLVQDGPNEETTKLVFEMEGNGLPQAGEQHALDVPGTTGPTSSAVVVANPDQP FT STQAQRMELAVATGAVSSNVPDAVRQCFALLRTFPWNTRQATGTYLGSATLSPALNPYT FT AHLSAMWAGWGGSMEARVTISGSGTFAGKIIVALLPPGLDPTRVRDPGVLPHAQVDARA FT VDPITFNINDVRAVDYHRTDGQEATSTLGFWVLQPLINPFSHDALSTAWVSVETRPGPD FT FDFCLLKPPQMEMENGFSPSTLLPRHLGRSRGNRCGGFIVGMAVVAMARQVNHHFSTAA FT TTYGWSTLPLGPCAAKITSALPGEINNYTGFADVDGAGEGPIMPNIPNHWPDSCASSVI FT ATWDGSLHRPDLGISGSIMTFDNHGDADEAQITGAMAATVDPSPSRRTQLQGSFTANTM FT RILRTSGLDKIGEVNKNVYFIPILLDGATGYINEKVTNLADINISYGPVGSNNVILWRE FT RVFSSHPRPGILYSSQLESTASIFQDGPVNIPNNYMAVFNVSDTGADFQIGICPDGYMR FT TGSPVGTVVDLTPECTFTFVGLFPFTSPLNGPHGTGRGRSVYQ" FT CDS 5184..5669 FT /codon_start=1 FT /product="ORF3" FT /db_xref="InterPro:IPR009949" FT /db_xref="UniProtKB/TrEMBL:Q0R5W4" FT /protein_id="AAZ09451.1" FT /translation="MAYPRLENSMLLTCQEQLARLRRQWWWQILTNLLPRPNAWSWLLQ FT PVPCHQMSRMQCVSALHSFAHFLGTLDRPQALIWDLLRCPQLSTHIPHIFRRCGQGGVV FT AWRRVSPFLVLAPLLVKLLLPYCPRGWTQRVCVILEFCPTPRLTLALWILSHLTSTM" FT CDS 6826..7329 FT /codon_start=1 FT /product="ORF2" FT /db_xref="InterPro:IPR008437" FT /db_xref="UniProtKB/TrEMBL:Q0R5W3" FT /protein_id="AAZ09450.1" FT /translation="MSWLVGALQLGGALVDAAGSVSNMVYQHKQLELLKQQNQLYSTWM FT AKNEQLQRDSMALSEKLTTEGPALRVKAALDAGFDPVSARRLAGSGERRIQGYIDMPIM FT TQQQSSAHWVNGNLTKVNSALTTFQQGTPFGKPQPPKFQTGGPNIGNNRPAVNIGHNSG FT SSSA" XX SQ Sequence 7427 BP; 1754 A; 2063 C; 1892 G; 1718 T; 0 other; gtgattggtt agtatggctt ctaagccatt ctaccctatt ttattcaacc gtaaggttga 60 gtactcagtg ctcagatcag ctcacctcag ggtgagtggt cgtgagcaaa tgtttgagac 120 tatagcagaa ctagatagtc atgttgaaac agtggttgcc agactgtggc gtgataattt 180 gcgccgcagt ctggtagcga cccctacctt cactgaggag ggattgttag actcattcct 240 atcaaaacca cccgtggaca tcaacccaga tacgacgttc cgtgagttat ttggagttga 300 ccctcacgaa cagttcccct tgtccattca tgatctggcc aagttacaag gcgagcttgt 360 ggaggcagcg cgcaatcctg gtcacatatt gcggcgtcat tactccaccg attcgctcac 420 cgccctaatc aacaaaataa caaaatttgt ccccgtccag gcaaccctac aagaaatgca 480 agctcgacgt gcatttgagc gcgaacgagc ggaccttttc aaggagctgc cacacgtcga 540 accagacgtt ggtcaccagc agaagtccta cttctatgca atgtggcggc aggtggtgaa 600 gaagggaaag gagttcttta taccccttgt caagtgcacc tcatggcgga aaaagttcac 660 tgaacctgcc gaaatcgtgc gacaagtgct ggtccacttt tgtgagggga tgcgttcgca 720 attttccaca aatgcgaact acatcaactt gtcgcttatc gcaaagatgc gaccgaccgt 780 cttgactatg attttccaac aacacaagaa cacataccgt ggctggctag caacggtcac 840 cgctctgatt gaggtgtact ccaacttatt ccaggacatg agggacacag cggtgtccgc 900 agtatctgcg gtcaccctcg tgtttgaaac aatcaaggat ttcatcaaca acgtcattga 960 cttggtcaag tccacctttc gagcgcaagg tccaacacca tgtgggtggg cggccatagc 1020 cgctggtgcg ttgctcatct taatgaagct ttcaggatgc tccaacacag ccagctactg 1080 gcacaggttg cttaaggtgt gtggaggagt taccactctt gctgcggcgg ctcgcgctgt 1140 ggtttgggtt cgtgacataa tcatggaagc tgatggtaag tcccggctca agaagtacat 1200 ggcccggacc gcagccttgc tggagctcgc agcctccaga gatgtcaatg gcaccgatga 1260 gctaaagcgg ttactggact gcttcacaca gcttatcgag gaagggacag agctgattca 1320 ggagttcgga acatcaccac tggctggcct tgcccgctcg tacgtcagtg agctggagtc 1380 ggctgctaat agcatcagga gcaccatttt gctcgacacc ccacgcaaga cccccgttgc 1440 catcatcctc actggccctc caggcatagg caaaactagg ttggcacaac acctcgcggc 1500 tgggtttggt aaggtgtcaa atttttccgt gacgcttgat catcatgact cgtacactgg 1560 caatgaggtt gccatctggg acgagtttga tgttgacaca caaggcaagt ttgttgagac 1620 catgattggt attgtcaaca cggcaccata cccactcaac tgcgaccggg tagagaacaa 1680 aggaaaagtg ttcacatctg actatgtcat ctgcaccagc aattacccta catctgtcct 1740 cccggagaac ccacgggctg gcgccttcta ccgtcgtgtg atcacggtgg acgtctcatc 1800 accctcaata gatgactgga agaagaggaa ccctgggaag aaacccccag tggacctgta 1860 caagggagac ttctcgcact tgcgcttgtc agttagaccg tttcttggct acaaccctga 1920 aggagacaca ttggacggcg tgcgggttaa gcccacaacc accagtgttg atgggttgtc 1980 acgcttaatg gagaccaagt ttaaggaaca aggaaatgag caacgcaaca tttggatcac 2040 ctgtccgcgc gatctggtgg cccctgccgc gtcaggtttg aaatcctaca tggcagccaa 2100 tcgcgcactt gctcaagtgt ttcaggagcc ctcttcccag gacattgggg aaacgtgcac 2160 ctcgcgcgtg tacgtttcat gcaacaatcc accacccaca tttattggac gcgttgtaaa 2220 aatcacagct attaacccat gggacgcctc gttggccaat tcaatgctct caatgtttga 2280 gacttccaca cacataccag catcagtgca gcgtgagatt atgtacaggg tgtgggaccc 2340 gttggtccac ctacagtcac gagagcccaa cacacagatg ttaccataca tcaatcgggt 2400 ggtacctgtc gccacggctt ttgatttcat acgaggcctc cgacaccatc tcggtctgtg 2460 ctcagtcaag gggatgtggc gcgcttacca aggctggaca agctcaaatt caatcctcga 2520 gtttttgtca aaacatatgg ctgatgtgaa tttcccccat aaccctgagt gcaccgtgtt 2580 ccgggcccct gatggggatg tcatcttcta cacttttggg tcatatgcgt gctttgtgtc 2640 ccccgcccgc gtgccctttg ttggcgaccc ccccaaaaac gttcactcaa atatcacccg 2700 caacatgaca tgggttgaaa ccttacgctt gcttgctgag acggtgacgg agtgtctagc 2760 gcatttcggc ccgttcttgc tcatgttgca caacgtgtcc tacctcactg cgcggtccag 2820 ccgcgatgag gaagcaaagg gtaaaacaaa acatggccgc ggtgcaaagc actcacgcag 2880 ggggggagtc agcctgtctg atgatgagta cgatgagtgg cgagatctag tgcgtgactg 2940 gcgccaggac atgacagtca gcgagttcgt cgagcttcga gagaggttcg cactcggcat 3000 ggactctgag gatgtgcagc gatatcgtgc ctggctcgag ctgagagcaa tgcgcatggg 3060 ggcaggggct taccaacatg ccacaatcat cggcaggggt ggtgtccaag acacgataat 3120 acgtactcaa cccatgcgtg caccacgagc accacgcagt cagggctatg atgaagaagc 3180 acccactcca atagtcgtgt tcacttccgg tgatgagcac attggttatg gttgccactt 3240 gggcaatggc gtggttgtga ctgtcacgca tgttgcatca gctgcagatc aggtggaagg 3300 ccaggagttc actattagga aaactgaggg ggagaccacc tgggttaaca caaatctcgg 3360 ccacctgccc cattaccaac ttggggaggg tgccccggtc tattactcag cccgcctcca 3420 cccagtgaca acaatagcgg aaggaacata tgaaacaccc aacatcacag tccaggggta 3480 ccatctcagg atccttaatg gttacccaac caagcgcggg gattgcggga cgccatattt 3540 cgacgcctgc cgcagactgg tgggtttgca cgccgcgact tccaccaacg gcgagacaaa 3600 gctcgctcaa cgcgtaacta agacatcacg tgttgagaac gcttttgcgt ggaaaggtct 3660 ggcggtcata cgtggtcctg attgcggggg catgcccact ggcactcgtt accaccgctc 3720 tcctgcctgg cctgagacaa ttgagggtga gacccacgcc cctgccccat tcgggtctgg 3780 tgactctcgg tattcattct ctcaggtgga aatgctcgtt aatggactca agccttactc 3840 tgaacccaca ccaggtatcc cacctgcctt gctccaaagg gcggcaacac acacacgcac 3900 ctacctggaa actataattg gcacccacag gtcacctaat ttaacttttg gagaagcctg 3960 tgccttgttg gagcgtacaa cttcttgtgg gccttttgtg gccggccaga aaggggacta 4020 ttgggatgaa gacaagcagt gctacactgg cgtgctggca gaccacctcg ctaaggcctg 4080 ggacgccgcc aacaggggtg tggcccccca gaatgcatac aagctggcac ttaaggatga 4140 acttcggccc attgacaaga acgcgcaggg caagcgccgg ttgttgtggg gttgtgatgc 4200 cggggccacg ctggtcgcca ctgcagcatt caaaggggtg gccacgcgac tgcaagcggt 4260 tgctcccatg acaccagttg gggttggcat caacatggac agctaccaag ttgaagtgct 4320 taatgaatct ctcaagggag gggttctcta ctgtttggat tacagtaagt gggactccac 4380 ccagcatcca gcggtcacgg cctcctcatt gtcaatccta gaacggctgt ctgaggccac 4440 cccaatcacc acatccgcag tggagttgct atcatcccca gcgcgaggcc acttaaacga 4500 cataattttt gtcaccaagt ccgggcttcc atcaggcatg ccattcacca gtgtcatcaa 4560 ttccctcaac cacatgacgt attttgccgc ggcagtgttg cgagcctacg agcaacacgg 4620 ggccccctac accggaaatg ttttccaagt tgaaacagtc cacacttatg gagatgactg 4680 tctgtattca gtctgtcctg ccacggcctc catcttccaa tctgtattgg ccaatctcac 4740 ctcattcgga ctaaagccta ccgctgcaga caagagtgaa tgcattgccc ccacccacac 4800 gccagtattt cttaaaagaa ccctgacctg cacgcctcgt ggcgtacggg ggctcttgga 4860 catatcctcc atcaaaaggc aattcctttg gatcaaggcc aatagaacaa ctgacatcaa 4920 ttccccaccg gcttatgacc gggaggcacg tagtgtccag ctcgaaaacg cccttgccta 4980 tgcttcacag cacggccaca gcgtctttga ggaggttgcc aagttggccc gtcatacggc 5040 caaagctgag gggcttgtgt tgacgaatgt caactacgac caggctctcg ccacctacga 5100 atcctggttc ataggtggtg caggcctggt gcaagatggc cccaatgaag agaccaccaa 5160 attagtgttt gaaatggagg gcaatggcct accccaggct ggagaacagc atgctcttga 5220 cgtgccagga acaactggcc cgacttcgtc ggcagtggtg gtggcaaatc ctgaccaacc 5280 ttctacccag gcccaacgca tggagctggc tgttgcaacc ggtgccgtgt catcaaatgt 5340 cccggatgca gtgcgtcagt gctttgcact ccttcgcaca tttccttgga acactcgaca 5400 ggccacaggc acttatctgg gatctgctac gctgtcccca gctctcaacc catataccgc 5460 acatctttcg gcgatgtggg cagggtgggg tggtagcatg gaggcgcgtg tcaccatttc 5520 tggttctggc acctttgctg gtaaaattat tgttgcccta ctgcccccgg ggttggaccc 5580 aacgcgtgtg cgtgatcctg gagttttgcc ccacgcccag gttgacgctc gcgctgtgga 5640 tcctatcaca tttaacatca acgatgtgag agctgtggac taccatcgca ccgatggcca 5700 ggaagccacc agcaccctgg gtttctgggt gttgcaaccc ctcatcaatc cattcagcca 5760 cgatgctttg tccactgcgt gggtatcggt ggaaactaga ccaggacctg attttgactt 5820 ctgcctcctg aaacccccac aaatggagat ggagaatggg ttctcaccca gcacgctctt 5880 acccagacat cttggccgtt cccgcggtaa taggtgtggg gggttcattg taggtatggc 5940 tgtagtggcc atggcacgcc aggtcaacca ccatttctcc actgcagcca caacctatgg 6000 gtggtccaca cttcccctgg gcccgtgtgc tgcaaagatc actagtgctc tccctgggga 6060 aataaacaac tacaccgggt ttgcagatgt tgatggtgcg ggtgagggac caataatgcc 6120 taacatccca aatcattggc ccgactcttg tgcctcgtct gtcattgcaa cttgggacgg 6180 ctcacttcac cgcccagacc ttggcattag tggttcaata atgacctttg acaaccatgg 6240 ggatgcggat gaagcccaaa taaccggggc tatggcagca acggtggatc catcccccag 6300 tcgtagaacc caactacaag gtagctttac tgccaacacc atgcgcatac tgcgcacgtc 6360 tgggcttgac aagattggtg aggttaacaa gaatgtgtac tttattccaa tccttcttga 6420 tggggccact gggtacatca atgaaaaagt tacaaacttg gctgatatca acatctcata 6480 tggccctgtt ggttccaata atgtcatcct ttggcgcgag cgggtctttt ccagccaccc 6540 tcgaccaggc atcttgtaca gctcccagct tgaatccact gcctctatct ttcaagatgg 6600 gccagtaaac atacctaaca actacatggc agttttcaat gtgagtgaca cgggtgcaga 6660 tttccaaatt ggcatttgcc ctgacgggta catgcgcaca ggatctccag ttggcacagt 6720 tgttgatcta acacccgagt gcactttcac ttttgttggc cttttcccct tcacttcccc 6780 tctcaatggg cctcatggga ctgggcgagg cagaagcgtt taccaatgag ttggttggtg 6840 ggagcactcc agcttggcgg tgcgcttgtt gacgctgctg gcagcgtgtc caacatggtg 6900 taccagcaca aacaacttga actccttaaa caacaaaacc aactgtattc aacttggatg 6960 gccaaaaatg aacagctcca acgtgactcc atggcactgt ctgaaaagtt gacaacggag 7020 ggccccgctc tccgagtcaa ggctgcacta gacgcgggtt tcgaccccgt cagtgctcgc 7080 cgtttggccg ggtcagggga acgccggatt caggggtaca tagacatgcc tatcatgact 7140 cagcagcaat catctgcaca ctgggtgaat ggcaatttga ccaaagttaa ttcggcactt 7200 accacattcc agcaaggtac cccttttggc aagccccaac cccccaaatt tcaaacaggt 7260 gggcccaaca ttgggaataa cagaccggca gtcaacattg gacacaactc aggctcatca 7320 tctgcctgat ttaccctctt tcatttcttt tcttttcttt tccgactggc actcacgcgt 7380 tcgggagtat aatgccaatt aagcgattgg ctccagtttc ctctagg 7427 //