ID DQ056292; SV 1; linear; mRNA; STD; VRL; 6533 BP. XX AC DQ056292; XX DT 01-JUN-2005 (Rel. 84, Created) DT 11-JAN-2006 (Rel. 86, Last updated, Version 3) XX DE Soochong virus-1 isolate SC-1 putative polymerase mRNA, complete cds. XX KW . XX OS Soochong virus-1 OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Hantaviridae; Mammantavirinae; Orthohantavirus; OC unclassified Orthohantavirus; unclassified Hantavirus. XX RN [1] RP 1-6533 RX DOI; 10.1002/jmv.20538. RX PUBMED; 16372283. RA Baek L.J., Kariwa H., Lokugamage K., Yoshimatsu K., Arikawa J., RA Takashima I., Kang J.I., Moon S.S., Chung S.Y., Kim E.J., Kang H.J., RA Song K.J., Klein T.A., Yanagihara R., Song J.W.; RT "Soochong virus: an antigenically and genetically distinct hantavirus RT isolated from Apodemus peninsulae in Korea"; RL J. Med. Virol. 78(2):290-297(2006). XX RN [2] RP 1-6533 RA Song J.-W., Kang H.J., Kim E.-J., Moon S.-S., Baek L.J.; RT ; RL Submitted (09-MAY-2005) to the INSDC. RL Microbiology, College of Medicine, 5Ga Anam-dong, Sungbug-gu, Seoul RL 136-701, Korea XX DR MD5; 17446567e485d17d162114fb60d844a9. DR EuropePMC; PMC1997112; 17711577. DR EuropePMC; PMC3147906; 21632770. DR EuropePMC; PMC3557881; 23171649. XX FH Key Location/Qualifiers FH FT source 1..6533 FT /organism="Soochong virus-1" FT /segment="L" FT /host="Apodemus peninsulae" FT /isolate="SC-1" FT /mol_type="mRNA" FT /db_xref="taxon:286541" FT CDS 38..6493 FT /codon_start=1 FT /product="putative polymerase" FT /db_xref="GOA:Q4TUZ1" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR016268" FT /db_xref="InterPro:IPR024378" FT /db_xref="UniProtKB/TrEMBL:Q4TUZ1" FT /protein_id="AAY56324.1" FT /translation="MDKYREIHNKLKGYSPGTLTAVECIDYFDRLYAVRHDIVDQMIKH FT DWSDNKDSEEPIGKVLLFAGVPSNIITALEKKIIPNHPTGKNLKAFFKMTPDNYKITGT FT TIEFVEVTVTADVDKGIREKRIKYEAGLAYIEQELHKFYLKGEIPQPYKITFNVVAVRT FT DGSNITTQWPSRRNDGVVQYMRLVQAEISYVREHLIKPDERAALEAMFNLKFNISTYKS FT QPYYIPDYKGIDPIGANIEDLVEYSKEWLSRARNFSFFEVKGTAVFECFNSNEASHCQK FT YPMSRKPRNFLLIQCSLITSYKPATTLSDQINSRRACAYILNLIPDTPASYLIHDIAYR FT YINLTREDMINYYAPRIQFKQTQNIREPGTFKLTSSMLRAESKAMLDLLNNHKSGEKYG FT QQIESLNIASHIVQSESVSLITKILSDLELNITEPSTQEFLTTKHTYVDTVLDKFFQNE FT TQKYLIDILKKTTAWHIGHLVRDITESLIAHSGLKRSKYWSLHSYNNGNVILFILPSKS FT LEVAGSFIRFITVFRMGPGLVDKENLDTILLDGEYQWGVSKVMSIDLNRLLALNIAFEK FT ALIATATWFQYYTEDQGQFPLQYAIRSVFANHFLLSVCQKMKLCAIFDNLRYLIPAVTS FT LYSGFPSLIEKLFERPFKSALEVYVYYNIKSLLVALAQNNKARFYSKVKLLGLTVDQST FT VGASGIYPSFMSRIVYKHYRSLISEVTTCFFLFEKGLHGNMNEEAKIHLETVEWALKFR FT EKEEKYDESLVENGYMMWELIENPDLAEQQLYCQDAIELAAIELNKVLSTKSSVVANSI FT LNKNWEGPYFSQTRNISLKGMSGQVQEDGHLSSSVTIIEAIRYLSNSRHNPSLLKLYEE FT TREQKAMARIVRKYQRTEADRGFFITTLATRCRLEIIEDYYDAIAKNITEEYISYGGEK FT KILAIQGALEKALRWASGESFIELSNQKFIRMKRKLMYVSADATKWSPGDNSAKFRRFT FT AMLHNGLPNDKLKNCVIDALKQVYKTDFFMSRKLRNYIDSMENHDPHIKQFLDFFPDGH FT HGEVKGNWLQGNLNKCSSLFGVAMSLLFKQIWSQLFPELDCFFEFAHHSDDALFIYGYL FT EPVDDGTDWFLFVSQQIQAGHLHWFSVNTEMWKSMFNLHEHILLLGSIKISPKKTTVSP FT TNAEFLSTFFEGCAVSIPFVKILLGSLSDLPGLGYFDDLAAAQSRCVKALDLGASPQVA FT QLAVALCTSKVERLYGTAPGMVNHPAAYLQVKHSDTPIPLGGNGAMSIMELATAGIGMS FT DKNLLKRALIGYLHKRQKSMLYILGLFKFLMKLSDETFQHERLGQFSFIGKVQWKIFTP FT KSEFEFADMYTPKFLELWSNQHVTYDYIIPKGRDNLLIYLVRKLNDPSIVTAMTMQSPL FT QLRFRMQAKQHMKVCRLEGDWVTFREVLAAANSFAEGYVPDNQDIDLFQTLTSCTFSKE FT YAWKDFLNGIHCDVIPTKQVQRAKVARTFTVREKDQIIQNSIPAVIGYKFAVTVDEMSD FT VLDTAKFPDSLSVDLKTMKDGVYRELGLDISLPDVMKRIAPMLYKSSKSRVVIVQGNVE FT GTAEAICAYWLRSMSLVKTIRVKPHKEVLQAVSIFNRKEDIGQQKDLAALKLCIEVWRW FT CKANNAPYRDWFHALWFEDKTFSEWLDRFSRVGVPPVDPEIQCAALMIADIKGDYSILQ FT LQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEIFWDKKTYILETS FT ITQKHVLKIMMDEVSKELLRCGMRFNTEQVQGVRHMVLFKTESGFEWGKPNIPCIVYKN FT CVLRTSLRTTQAINRKFMITIKDDGLRAIAQHDDDSPRFLLAHAFHTIRDIRYQAVDAV FT SNVWFIHRGVKLYLNPIISSGLLENFMKNLPAAIPPAAYSLIMNRAKISVDLFMFNDLL FT KLINPSNTLDLSGLETTGDGFSTVSSMSSRLWSEEMSLVDDDEELDDEFTIDLQDVDFE FT NIDIEADIEHFLQDESFYTGDLLISTEETEVKKMRGIVKILEPVRLIKSWVSRGLSIEK FT VYSPVNIILMSRYISKTFNLGNKQVSLLDPYDLTELESIVRGWGECVIDQFDTLDKEAQ FT SMVVNKGICPEDVIPDSLFSFRHTMVLLRRLFPQDSISSFY" XX SQ Sequence 6533 BP; 2172 A; 1055 C; 1371 G; 1935 T; 0 other; tagtagtaga ctccggaaat gacaagagct aaaaaagatg gacaaatata gagaaattca 60 taacaagtta aaggggtatt ctcctggcac actgactgca gtagagtgta tagattattt 120 tgataggtta tatgcagtca ggcatgatat tgtagatcaa atgataaagc atgactggtc 180 tgacaacaaa gattcagaag aaccaatagg gaaagttcta ctttttgcag gagttccttc 240 aaacattata acagcactgg aaaaaaagat tattccaaat catccaacag ggaaaaacct 300 taaagcattt tttaagatga cacctgacaa ttataagatt accgggacta ctatagaatt 360 tgtggaggtg acagttacag cagatgtgga caaggggata agagagaaaa ggattaagta 420 tgaagcagga ttagcctata ttgagcagga attgcacaaa ttctatctaa aaggtgaaat 480 tccacagcca tacaagatta catttaatgt tgttgcagtc cggactgatg gctcaaatat 540 tacaactcaa tggcctagta gaagaaatga cggtgttgtt cagtacatga gattagtcca 600 ggctgagata agttatgttc gagagcactt gatcaaacca gatgaaaggg cagctctaga 660 ggcaatgttc aatttgaaat ttaacataag cacatacaaa agtcagcctt attacatccc 720 agattataaa ggcattgatc caataggtgc aaatattgaa gatttggttg agtattccaa 780 agagtggttg tctagagcaa ggaacttttc tttctttgag gttaagggaa cagctgtttt 840 tgagtgtttt aattcaaatg aagcaagtca ctgccaaaag tacccaatgt ctcgcaaacc 900 taggaatttt ctcttaatac agtgttctct gattacatcg tataagcctg ccaccacatt 960 atcagatcaa attaatagca ggagggcctg tgcatatatc cttaatctca ttccagacac 1020 accagcatca tacttaattc atgatatagc atataggtat attaatttga caagagaaga 1080 tatgataaat tattatgcac caaggattca gtttaaacag acacaaaata tacgggaacc 1140 tggcacgttt aagttgacat caagtatgct gagggcagag tcaaaggcta tgctagatct 1200 cctcaataat cataagagtg gagagaaata tggccaacaa attgagagtc taaatatagc 1260 aagtcatatt gttcaatctg agtctgtcag tttaataacc aagatcttat ctgacttgga 1320 gttaaatatc actgagcctt caactcagga gttcctgaca accaaacaca cttatgttga 1380 tacagtattg gataagtttt ttcaaaatga aacgcaaaaa tatttaattg acattttaaa 1440 gaaaactaca gcatggcata tagggcatct agtcagggat attacagaaa gtttaattgc 1500 ccactccgga ttaaagaggt caaaatattg gtcattacac tcatataata atggcaatgt 1560 gattttattt atccttccgt caaagtcact cgaagtagca ggatccttta taaggtttat 1620 tactgtattc aggatgggtc caggtttagt tgataaagag aatttggata ctatcttgct 1680 tgatggtgag tatcaatggg gggtttcaaa agtgatgagc attgatttaa acaggctatt 1740 ggcattaaat attgctttcg aaaaggctct aattgcaaca gctacgtggt ttcagtatta 1800 tactgaggat cagggacagt tccccctaca atatgcaata cggtcagtat ttgcaaacca 1860 tttccttttg tcagtttgtc aaaagatgaa actctgtgca atttttgata atttgagata 1920 ccttatacca gctgtcacat ctttatactc aggctttcct tcattgatag aaaaactctt 1980 tgaaagacct ttcaagtcag cattggaagt ttatgtttat tataatataa aaagtctatt 2040 agtagctttg gcgcaaaata ataaggctcg gttctattca aaagtcaaat tattagggtt 2100 aactgtagat cagtcaactg taggtgcaag tgggatttat ccctcattca tgtcacgtat 2160 agtatataag cactatagaa gtctaatttc agaagtaaca acatgttttt tcttatttga 2220 aaaaggactc catggtaata tgaacgaaga ggcaaaaatc catttagaga cagtagaatg 2280 ggctcttaaa ttcagagaaa aggaggaaaa gtatgatgaa tcactagtgg agaatggtta 2340 catgatgtgg gaactcatag aaaatcctga cttggcagaa caacagctgt attgccaaga 2400 tgctatcgaa ctggcagcaa tagaattaaa caaggtgttg tccacaaagt caagtgttgt 2460 tgcaaatagt atattaaata aaaattggga aggtccttac tttagccaaa ccaggaatat 2520 tagtttaaag ggcatgtcag ggcaggtaca agaggatggg catttatctt cttctgttac 2580 aattattgaa gcaatacgct atttatcaaa ttcacgacat aatcctagtc tattgaaact 2640 gtatgaagaa acaagggaac aaaaagctat ggctagaata gttagaaaat accagaggac 2700 agaggccgat agaggcttct tcattaccac attggcaaca agatgtagac tagaaataat 2760 tgaggactat tatgatgcta ttgcaaaaaa tattacagaa gagtatattt cctatggagg 2820 tgaaaagaag atcttggcca tccagggggc actagaaaag gctctgaggt gggcatctgg 2880 tgaaagtttt atagaactga gcaatcaaaa atttataaga atgaagcgga agttgatgta 2940 tgttagtgca gatgcaacaa agtggtctcc tggggataat tcagcaaaat ttcggagatt 3000 tactgctatg ttacacaatg gacttcctaa tgataaatta aaaaactgtg tcattgatgc 3060 tctaaagcaa gtctataaaa cagatttctt tatgtcaaga aaactaagaa attatattga 3120 tagcatggaa aatcatgacc ctcacattaa gcaattcctg gattttttcc ctgatggaca 3180 ccacggggag gttaaaggga attggttaca aggaaattta aataaatgtt cttcattgtt 3240 tggcgtggca atgtccctat tattcaagca gatttggtcc caattatttc cggaacttga 3300 ctgctttttt gagtttgcac atcattcaga tgatgcatta tttatctatg gatatcttga 3360 accagtcgat gatgggactg actggttttt atttgtgtca cagcaaatcc aggcaggtca 3420 tttacattgg tttagtgtaa acacagagat gtggaaaagt atgttcaact tacatgaaca 3480 tatcctactt cttggctcta taaaaatttc acctaagaaa actactgtct cccctaccaa 3540 tgcagaattt ttatcaacat tctttgaagg ttgtgctgtt tcgatcccgt ttgttaaaat 3600 actgcttggt tcattatcag atttaccagg attagggtac tttgatgact tggcagcagc 3660 acaaagtagg tgtgtaaagg cacttgattt gggcgcttca cctcaggtag cacaattagc 3720 tgtagccttg tgcacaagta aggttgaaag attgtatgga acagcacctg ggatggtcaa 3780 ccacccagct gcatatctcc aagtaaaaca tagtgataca ccaatcccgt taggaggtaa 3840 tggggctatg tcaataatgg aactggctac agctgggata gggatgtcag ataaaaacct 3900 attaaagcgt gcgctcatag gttatttaca taagaggcaa aagtctatgt tatatatact 3960 ggggctattt aaattcctga tgaaactctc cgatgagact tttcaacatg agaggttggg 4020 tcagttctca tttattggaa aggtacagtg gaaaatcttt acacccaaat ctgaatttga 4080 gtttgctgac atgtatacac ccaaattctt agaactatgg agcaatcaac atgtgacata 4140 tgactatata attccgaaag gaagagataa tttgcttatt tatcttgtaa gaaaactaaa 4200 tgacccaagc attgtaactg ccatgactat gcagtcaccc ttgcaactca gatttagaat 4260 gcaagcaaaa caacatatga aagtttgtag attagagggt gactgggtga catttaggga 4320 agttcttgct gctgcaaata gctttgcaga aggctatgtt cctgataatc aggatataga 4380 tttattccag acattaacaa gttgcacatt ctctaaagag tatgcctgga aagatttttt 4440 aaatggaatt cactgtgatg tcatacctac aaaacaagtt cagagagcaa aagtggccag 4500 aacttttacg gtgagagaaa aggaccaaat tatacaaaat agtattccag ccgttatagg 4560 atataagttt gccgtaactg tggatgaaat gtctgacgtt ttagacacag caaaattccc 4620 agattcactt tctgttgatc tcaaaacaat gaaagatgga gtatatcgag agctcggtct 4680 tgatatatcc ttacctgatg tcatgaaaag gattgcacca atgctgtaca agtcgtcaaa 4740 atctagagta gttattgtac aagggaatgt tgagggaaca gcagaagcta tctgtgctta 4800 ctggttacgg tcaatgtctc tggtaaagac catccgagtc aagccccata aagaagttct 4860 ccaggcagtg tcgattttta ataggaaaga ggatataggg cagcaaaaag acttagctgc 4920 tcttaaatta tgtatagaag tatggaggtg gtgcaaagca aataatgcac catacaggga 4980 ttggtttcat gctttatggt ttgaagataa aactttttca gagtggctgg ataggttttc 5040 tagggtgggt gtcccacctg ttgatccaga aatccagtgt gcagccttaa tgattgctga 5100 tattaaggga gactattcaa tattacaatt gcaagcgaat aggagagctt attcaggtaa 5160 acagtatgat gcatattgtg tacaaacata taatgaagaa acaaaactat atgaagggga 5220 tttaagggtt acatttaatt ttggccttga ttgtgctagg ttggagattt tctgggataa 5280 aaagacatat atcttagaaa catcaataac acagaaacat gttttaaaga tcatgatgga 5340 tgaggtgtca aaagagcttt taaggtgtgg gatgagattt aataccgagc aggttcaagg 5400 tgtaagacac atggtcctgt ttaaaactga gtctggtttt gaatggggga agccaaatat 5460 cccctgtata gtctataaaa actgtgtgct acggacaagc ttgaggacaa cacaggcaat 5520 caaccgtaag tttatgataa caataaaaga tgacggtctc cgtgctatcg cacagcacga 5580 tgatgatagt ccccggtttc tattagcaca tgcttttcat acaattaggg acataagata 5640 tcaggcagtt gatgctgtaa gtaatgtatg gtttattcac cgaggagtca agctatattt 5700 aaatcctatt atttcttcag ggttgttaga gaactttatg aaaaacctcc ctgcagctat 5760 cccacctgct gcatattcgt taataatgaa ccgtgcaaaa atatctgttg atctctttat 5820 gttcaatgat ttattgaagc tcataaaccc tagcaacacc ttagacttat ctggtcttga 5880 gaccacagga gatgggttta gcacagttag ttcaatgtca agccgactat ggtctgaaga 5940 gatgagttta gtagatgatg atgaagaatt ggatgatgaa ttcacaatcg atttgcagga 6000 tgtagacttt gaaaacattg acattgaggc agatattgag cattttctcc aggatgaaag 6060 cttttacact ggggatttgt tgataagcac agaagaaact gaggttaaaa agatgagggg 6120 tattgtaaaa atacttgagc ctgtaaggtt aattaaaagt tgggtatcac gagggttatc 6180 aatcgaaaag gtatacagtc cagtcaacat catcttgatg tctaggtata tttcaaaaac 6240 ttttaactta ggtaataagc aagtgtctct attagatcca tatgatttaa ctgaattaga 6300 aagtattgtc cgagggtggg gtgagtgtgt cattgatcaa tttgacaccc ttgataaaga 6360 agcccaaagc atggtagtca ataaggggat ctgtcctgaa gatgttatac cagattcatt 6420 gttttctttc cgacacacaa tggtgttgtt acgccgttta tttccacagg attctatttc 6480 ctctttttat taggctttat ttctttttca ttttccggag cctactacta cta 6533 //