ID DQ026296; SV 2; linear; genomic DNA; STD; VRL; 2758 BP. XX AC DQ026296; XX DT 14-JUN-2005 (Rel. 84, Created) DT 21-MAR-2008 (Rel. 95, Last updated, Version 5) XX DE Squash leaf curl China virus - [Pumpkin: Lucknow] segment DNA A, complete DE sequence. XX KW . XX OS Squash leaf curl China virus - [Pumpkin: Lucknow] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2758 RX DOI; 10.1111/j.1439-0434.2007.01347.x. RX AGRICOLA; IND44028061. RA Singh R., Raj S.K., Prasad V.; RT "Molecular Characterization of a Strain of Squash leaf curl China Virus RT from North India"; RL J. Phytopathol. 156(4):222-228(2008). XX RN [2] RP 1-2758 RA Singh R., Raj S.K.; RT "Pumpkin yellow mosaic virus DNA A complete sequence from Lucknow, India"; RL Unpublished. XX RN [3] RP 1-2758 RA Singh R., Raj S.K.; RT ; RL Submitted (03-MAY-2005) to the INSDC. RL Plant Virology, National Botanical Research Institute, Rana Pratap Marg, RL Lucknow, UP 226001, India XX DR MD5; 993e97e7fc99712284ca62366a628c6f. DR EuropePMC; PMC3550709; 23637491. DR EuropePMC; PMC3550763; 23637479. DR EuropePMC; PMC5622471; 28964254. XX CC On Jun 20, 2005 this sequence version replaced gi:67043709. XX FH Key Location/Qualifiers FH FT source 1..2758 FT /organism="Squash leaf curl China virus - [Pumpkin: FT Lucknow]" FT /segment="DNA A" FT /mol_type="genomic DNA" FT /db_xref="taxon:335396" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:Q4PU94" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q4PU94" FT /protein_id="AAY63952.2" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLLEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCRCPHCPRHKSKGMDQQADEQ FT KTQNVQNV" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q6TKF3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q6TKF3" FT /protein_id="AAY63953.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(310..795) FT /codon_start=1 FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:Q4PU92" FT /protein_id="AAY63957.3" FT /translation="MHILHCCCARFIVKHVKNFPKILGRSCRTTITNQKKHDTVSMVFS FT LDVFIHPYLPQHIDGFHTESLPYAMCESGSSCNITNTHDLANMRDIVPRFKGLHLTRAF FT TAPWHVGTSIHSVHSGFSVHRPVGPCLCFCDAGNGDNGTSSIGAVEVETSAYLRCGR" FT gene complement(1145..1459) FT /gene="AC3" FT CDS complement(1145..1459) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:Q4PU91" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q4PU91" FT /protein_id="AAY63956.1" FT /translation="MITDSRTGEYITADRAENGVYIWEVPNPLYFKIIKHDIRPCLVEH FT DIIKVHIMFNHNLRKALGLHKCVLMFQIWTGLRPPTGIFLRVFKTQVLKYLDMLGVIRY FT " FT gene complement(1194..1598) FT /gene="AC2" FT CDS complement(1194..1598) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator" FT /db_xref="GOA:Q4PU90" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q4PU90" FT /protein_id="AAY63955.1" FT /translation="MQSSSQSKNHSIPVAKESLHPKKKKNIRRRRIDLPCGCSYYMSID FT CHDHGFTHRGVHHCGSSREWRVYLGSSKSPIFQNNKTRYQTVSSRTRHNQSAYNVQPQP FT AESTGTSQMCSNVPNLDGLTPSDWDFLESL" FT gene complement(1501..2604) FT /gene="AC1" FT CDS complement(1501..2604) FT /codon_start=1 FT /gene="AC1" FT /product="replication initation protein" FT /db_xref="GOA:Q4PU89" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q4PU89" FT /protein_id="AAY63954.1" FT /translation="MAPPRHFKVNAKNYFLTYPKCSLTKEEALSQLKTLETPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSQSRSAHFHPNIQGAKSASDVKQYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKEDALKVLKELAPKDYVLQFH FT NMNSNLDRIFPPQAEVYISPFSVSSFDRVPQELVDWVSSNLRCSAARPFSAALPIRPIG FT LVLEGDSRTGKTAWARSLGPHNYLCGHLDLSPRVYNNDAWYNVIDDVDPHYLKHFKEFM FT GAQRDWQSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWALKNAIFI FT TIEEPLYSGRERISSSEEEEEHQAQTN" XX SQ Sequence 2758 BP; 754 A; 581 C; 600 G; 823 T; 0 other; ccgaatggcc gcccgatttt tttatgtggg tcctcaacca atgaaatgca cgctacatgg 60 cttatttagt gtgtggggac caataaatag acttgcccac caagttcgga tctacaaaca 120 tgtgggatcc attattgcac gaatttcctg aaagcgttca tggtttaagg tgcatgctag 180 ctgtaaaata tcttctagag atagaaaaga attattcacc agacacagtc ggctacgatc 240 ttgtccgaga tctcatcctt gttcttcgag caaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgc atcgaaggta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg ccgttgtccc cattgcccgc gtcacaaaag caaaggcatg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtccttt gaatctaggc acgatgtctc tcatattggc 540 aaggtcatgt gtgttagtga tgttacacga ggaaccggac tcacacatcg cgtagggaag 600 cgattctgtg tgaaatccgt ctatgtgctg gggaagatat ggatggatga aaacatcaag 660 actaaaaacc atactaacag tgtcatgttt tttttggttc gtgatcgtcg tcctacagga 720 tctccccaag attttgggga agtttttaac atgtttgaca atgaaccgag cacagcaaca 780 gtgaagaata tgcatcgtga tcgttatcaa gtcttacgga agtggcatgc gactgtgacg 840 ggaggaacat atgcttctag agagcaagca ttagttagga aatttgttag ggtcaataat 900 tatgttgttt acaatcaaca agaggccggc aagtatgaga atcatactga aaatgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat acgctacatt gaaaatccgg 1020 atctattttt atgattcggt aacaaattaa tatatattca atttcacatc atatgttgtc 1080 catacatcaa ttgttttttc caagacatta tccaaaacat gatcaactgc tcttaatact 1140 attattaata ccgaatcacc cccaacatat ccaggtactt aaggacctgt gtcttaaaga 1200 ctctcaagaa aatcccagtc ggagggcgta agcccgtcca gatttggaac attagaacac 1260 atttgtgaag tcccagtgct ttccgcaggt tgtggttgaa cattatatgc actttgatta 1320 tgtcgtgttc tactagacac ggtctgatat cgtgttttat tattttgaaa tataggggat 1380 ttggaacttc ccagatatac acgccattct ctgctcgatc cgcagtgatg tactcccctg 1440 tgcgtgaatc cgtgatcatg gcaatctatt gacatgtaat acgagcatcc gcacggtaga 1500 tcaattcgtc tgcgcctgat gttcttcttc ttcttcggat gaagagattc tttcgcgacc 1560 ggaatagagt ggttcttcga ttgtgatgaa gattgcattc tttaatgccc actgtttcag 1620 tgctgcattc ttctcttcat cgagatattc tttgtaactg ctgttcggtc ctttattgca 1680 gaggaagatg gtgggaattc cacctttaat catgactggc tttccgtact tcgtgttgct 1740 ttgccagtct ctttgggccc ccatgaattc tttaaaatgc tttagatagt ggggatcaac 1800 gtcatcaatg acgttgtacc aagcatcatt attgtacact ctcgggctta gatctaggtg 1860 gccgcacaga taattgtgcg gtcccaaaga acgcgcccac gctgttttgc ccgttctact 1920 atcaccctct aaaactaacc ctatgggtct aattgggagc gcagcggaaa aaggccgcgc 1980 agcggaacac ctcaaatttg acgacaccca atcgacgagt tcttgcggaa ctctgtcgaa 2040 ggatgaaact gaaaaaggag aaatatacac ctcagcttga ggtggaaaaa tacgatctaa 2100 attggaattc atattatgga attgcaaaac ataatctttt ggtgctaatt ctttcaatac 2160 tttcaatgca tcttccttat tccctgtatt gattgccttt gcgtacgcgt cgtttgctgt 2220 ttgttgtcct ccacgagcag atcggccatc gatctggaaa acaccccatt ctaatacgtc 2280 accgtctttg tcgatgtatt gtttgacgtc cgatgccgat ttagctccct gaatgttcgg 2340 atggaaatgt gctgaccgac tttgggacac caagtcgaag aatctgttat ttttgcattg 2400 aaacttgcct tcgaactgga taagaacgtg gatatgtgga gacccatctt cgtgtagctc 2460 tctgcaaatt ttgataaatt tcttcgaagt tggagtttct agggttttta attgggaaag 2520 tgcctcttct ttggttagag agcactttgg atacgtgagg aaatagtttt tcgcatttac 2580 tttgaaatgc ctaggaggag ccatcaaaac gcgcgttttg attcggagtc tctccaaaac 2640 tatggtatat tggggtatgg agtctcatat atactttgga caccaaatgg caaaatggta 2700 attatgtaaa taattacttt aattcaaaat gactaaagcg gccattcgta taatatta 2758 //