ID DQ013304; SV 1; linear; genomic RNA; STD; VRL; 7454 BP. XX AC DQ013304; XX DT 07-MAR-2006 (Rel. 87, Created) DT 16-JUN-2006 (Rel. 88, Last updated, Version 2) XX DE Newbury agent 1, complete genome. XX KW . XX OS Newbury agent 1 OC Viruses; Riboviria; Caliciviridae; Nebovirus. XX RN [1] RP 1-7454 RX DOI; 10.1016/j.virol.2006.02.027. RX PUBMED; 16574184. RA Oliver S.L., Asobayire E., Dastjerdi A.M., Bridger J.C.; RT "Genomic characterization of the unclassified bovine enteric virus Newbury RT agent-1 (Newbury1) endorses a new genus in the family Caliciviridae"; RL Virology 350(1):240-250(2006). XX RN [2] RP 1-7454 RA Oliver S.L., Asobayire E.E., Dastjerdi A.M., Bridger J.C.; RT ; RL Submitted (20-APR-2005) to the INSDC. RL Pathology & Infectious Diseases, Royal Veterinary College, 4, Royal College RL Street, Camden, London NW1 0TU, United Kingdom XX DR MD5; 55c1310e9169c931fa91e31001abd4e2. DR EuropePMC; PMC2395209; 18385231. DR EuropePMC; PMC2446860; 18417656. DR EuropePMC; PMC4143647; 24662519. DR EuropePMC; PMC4609679; 26292294. DR EuropePMC; PMC5866260; 29508188. XX FH Key Location/Qualifiers FH FT source 1..7454 FT /organism="Newbury agent 1" FT /host="cattle" FT /mol_type="genomic RNA" FT /country="United Kingdom" FT /db_xref="taxon:331642" FT 5'UTR 1..75 FT CDS 76..6708 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF1; contains nonstructural and capsid proteins" FT /db_xref="GOA:Q288N7" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q288N7" FT /protein_id="AAY60849.1" FT /translation="MAPVVSRDRHRHKIPKPHQPAPPHRCTVWCPEDCGWYVGRCSCPK FT SCQREGWDDFFVADKVKPPSYVASKTSVADVVDWLLEEDPATDGPSEFDLTQFFQAYTD FT KSHQIHRDYAPDQLAQALDMAYILSVDPPDIKLPEYEATRFTHDTSYKGKLPRWLRVYG FT FKSRELAKKAITNIKGGAHWAKGLFKQAWDTLPGWSEVEAYFKAFFAGIITGVEDALSK FT SPSSVWTSLKLTPLLYIWRNINECSDIPVILGAFWATLELYNIPSKVYDLVSTALGPMV FT QDLARRVINIIKGDGNGPKQEGGRPSFSIPGVLLATFLSAIILGSMPSDGIIKKVLRGC FT ATAAGLVGGFNAVKSIITTVQGASACKDVKKLASQLMCVTTMAATVSTRGERQVLASML FT NDLNESVRERLVDPAFAALVPQLSAMSSKIMELSTINAAALSAARKRVPAKIVVLCGPP FT GHGKSVAAHKLAKMLNPNEPSIWNPFSDHHDEYTAEDVVIIDETPAEPGQWVEDLIAMG FT SNSPFVPNYDRVENKTRCFDSKYVLITTNHNPLINPTHSRAAALARRLTWVYVNSPDVA FT DFLRQHPGVAPPATLFKADCSHLNFDIHPYNSIGTTAVVGHNGTTPLPRAKRTSLEGLC FT KHIKDLPDREGPPDGVPERMVLVAPDKGTARFVEAVINTYHNSGLVAQPAAWDTTPQKY FT QLAVTWQGSTSSVVGQRWDCNPQTPFVAPHFTRNMFKRVLGTEVPEYHLLAYACRITSS FT SLGDKSLPVPNPTVVINDPSPTRLALALMRHLKNPIASGLRVVWDLFRGCATGPKRLFT FT WALSQEWNPMPVTTAFTFPAGTVILHTAGGVRVVVLPPGPQFGLTEVTHLADHSGQDDP FT VVPDMFGQTWTELLWRLLKVIGTFLANYGVAIAGLTLSIAAFKTANKSTRNDRQGWLSG FT SGVALSDEEYDEWMKYSKKKGKKINADEFLQLRHRAAMGNDDDDARDYRSFYTAYQLGR FT EGNNCEDLPLHPAVGPTTGGGYYVHIGNGVGITLKHVASGEDVIKELGNDLVKIRARHH FT KMGDPAMVVGEGAPVKFVTGHLVVDARNESVVFDQTRLSVVRVKVPGLETQRGYCGLPY FT VNSAGHVVGLHQGSYGVGDKVFTPITDAPAASPDTIMWRGLECTRSDIVTHLPHGTKYS FT ISPGMREEAHKCTHQPASLGRNDPRCNQTQVAMVVKALTPYTSAPAIEKLDPCMVAAIT FT EVRTAIQSLTPKGGFRPLTFAAAWQSLDLSTSAGALAPGKTKRDLCDPDTGMPAGKYRE FT MLLAAWSRAGTGTPLDHTYIVALKDELRPVEKVAEGKRRLIWGADARVALIASAALTPV FT ANALKTVTNLLPIQVGVDPSSANCVSSWVGRLQRHDHCLELDYSKWDSTMSPVIINIAI FT DILCNTCGSDSLRMAVAQTLKSRPTALVEGVSVPTKSGLPSGMPFTSQINSIVHWILWS FT ATVRKCSLPLHIGSVNELAPFLTYGDDGLYTIPSHLTKSIDEIISTLKGYGLSPTAPDK FT GANVEIKRTSFTYLSGPVFLKRRIVLTPGGHRALLDLTSLARQPVWVNGPRRSVWNHEA FT QPIEIDAETRTIQLQNVLIELAWHQPQDFDHVLALVVKSAEASGLTIPRYSQEEARAIY FT DGRYYGIQHVSLPNNSDLIREGNMSDNKSTPEQQHESSRAMDAGATGAAAAAPAPPVAA FT APASGLVGALVAEPQSGPSAEQWRTAYTLFGTVSWNANAGPGTILTVGRLGPGMNPYTQ FT HIAAMYGGWAGGMDIRITIAGSGFIGGTLAVAAIPPGVDPESVNVLRMPHVLIDARGGV FT PLEVTLEDIRTSLYHPMGDTNTASLVIAVMTGLINPLGTDTLSVTVQLETRPGRDWVFF FT SLLPPTAGVASADPSQLLTRVALATSPEVRFGTGVLGILGLPSNPSVNRVYDVQSRTRG FT WSFPIPSSSVFMGDARNVEHNRRVMVQSSAPNNPLSDVFPDGFPDFVPQSDTEPDGGAV FT IAGQVLPHPGDNDNFWRLTPVVRGNTTAAINTIPERFNQVYFINLADEEAVSAATEELR FT FNGIQGIFGQRTNARAVQVMQGYVPRAEHIIRPAGFAGVGPQGPNVPIGFAGTMPNFNA FT TASGADDLVPVWGPTLVHTASLLAGTTYELAENSMYVFSVSTSTSTFELGMLANGTWLG FT PAQLAGTGITWTEVLSVTYMGMRFAYNPLSGQGIGGESRRL" FT mat_peptide 1063..1920 FT /product="RNA helicase" FT misc_feature 1426..1815 FT /note="Region: ATPase family associated with various FT cellular activities (AAA)" FT mat_peptide 3541..4980 FT /product="RNA dependent RNA polymerase" FT CDS 6710..7387 FT /codon_start=1 FT /product="ORF2" FT /db_xref="GOA:Q288N6" FT /db_xref="UniProtKB/Swiss-Prot:Q288N6" FT /protein_id="AAY60850.1" FT /translation="MASAATAGLTLLSGGASIAADIASIVTEQQRLALQKEQIRNNYEL FT GKQSLSLQQQAMENSRDRIRLSAAQIKELGLDPKSELNMLMGLTAGAQPPISTPISSEQ FT LFLNSSNLARSVRWDARNFGEAINTFAGLRAKHQANPNRPDMMLGSDNPNWGARATGDA FT LSVSGLSVRSNHFGSGPSSLGSLSSVRSNPFSSISSGSVGGISLRTVGSRPSIRSVFST FT TSV" FT 3'UTR 7388..7454 XX SQ Sequence 7454 BP; 1599 A; 2174 C; 2015 G; 1666 T; 0 other; gtgatttaat tatagagaga tagtgactat cacttttctt tcttcctctc atcgctggat 60 ttcggctgtc ctaaaatggc tccagttgtt tccagagata gacataggca taaaatacct 120 aaacctcatc agcccgctcc cccccatagg tgcaccgttt ggtgccccga ggattgcggg 180 tggtatgtgg gtcgttgttc ctgccccaag tcctgccaac gcgagggctg ggacgacttc 240 tttgtggcgg ataaggtcaa gccccccagt tatgtggcgt ccaagacttc ggtggcagac 300 gtcgttgact ggctgctcga agaggaccct gccacggacg gcccttcgga atttgacctg 360 acgcagttct tccaggccta cacggacaag tcccaccaaa tccatcgtga ttatgccccg 420 gatcaattgg ctcaggccct tgacatggcc tacatcttat ctgtggatcc accagacatc 480 aaacttccag agtacgaggc aaccaggttc acccatgaca cctcctacaa aggcaagctc 540 cccaggtggt tgcgcgtgta cggattcaag tcccgagagt tggcaaagaa ggcgatcacg 600 aacatcaagg gtggcgccca ctgggccaag ggtttgttta agcaggcctg ggacacgctc 660 cccggctgga gtgaggtgga ggcctacttt aaagccttct ttgcggggat catcactggc 720 gttgaggatg cactgtcaaa atccccctcg tcggtatgga cctcactcaa gttgacgcca 780 ttgctatata tatggcgcaa cataaatgag tgctctgaca tacctgtaat cctaggtgct 840 ttctgggcga cacttgagct ttacaacata ccatccaaag tgtacgacct ggtttctact 900 gcgttgggtc ccatggttca ggatctcgcg cgcagggtaa taaacatcat taagggggac 960 ggtaatgggc ccaagcagga ggggggccgc ccaagcttct ccattcctgg cgtcctcttg 1020 gccacctttc tgtccgcaat cattttggga tccatgcctt cagacggtat catcaaaaag 1080 gttctgcgcg ggtgtgcaac ggcggcgggg ctcgttgggg gtttcaatgc cgtgaagagc 1140 ataataacca cagtgcaggg cgctagtgct tgcaaagatg tcaagaaact tgctagccag 1200 ttgatgtgtg ttacaacaat ggccgccacg gtttccacac gcggtgagcg gcaggtgttg 1260 gcctccatgc ttaatgacct gaatgaaagt gtgcgagagc ggctggtaga tcccgccttc 1320 gcagcattgg tacctcagtt gtccgccatg tccagcaaaa tcatggagct ctccactata 1380 aatgcagcgg cactgtcagc agcacgcaag cgcgtccctg ccaagatagt ggtgttgtgc 1440 gggccacctg gccatggcaa atctgttgca gctcacaagc tcgctaaaat gctaaatcct 1500 aatgaaccct ccatctggaa cccgttttcg gatcaccatg atgagtacac ggcagaggat 1560 gttgtgatca tagatgagac gcctgcagag ccgggacaat gggttgagga cctcattgcc 1620 atgggttcca atagtccatt tgtgcccaat tatgataggg tggagaacaa gaccaggtgt 1680 tttgattcca aatatgtact cattacaacc aaccacaatc cactcattaa ccctactcac 1740 tcccgcgctg ctgcactggc tcgtaggctc acatgggttt atgttaactc ccctgacgtt 1800 gctgattttc tgcgccagca ccccggggtg gcaccgccag caacgctatt caaagcagat 1860 tgctctcact tgaactttga catccacccc tacaactcaa ttggcaccac cgccgttgtt 1920 gggcacaatg ggacaacccc gttgccgcga gccaagcgca cgtcgctgga ggggctgtgt 1980 aagcacataa aggacctgcc cgaccgggag ggacccccag acggggtgcc cgagcggatg 2040 gttctggtgg cccctgacaa gggcaccgcg cggttcgtgg aggccgtaat taacacttac 2100 cacaattctg gcctcgttgc ccagcccgcg gcttgggaca caaccccgca aaagtaccag 2160 cttgctgtga cctggcaagg ctccacatca tccgtggtgg gccagcggtg ggactgcaac 2220 ccgcagaccc cctttgtggc gccccatttc acgcggaaca tgttcaagcg tgtgctcgga 2280 acggaggtgc ctgaatacca tcttttggct tatgcctgcc ggatcacctc tagctcactg 2340 ggagataaga gcttgcctgt gccaaacccc actgtcgtca tcaatgaccc ttcacccacc 2400 cgacttgctc ttgccctcat gcgtcacctt aagaacccca tagcttcagg ccttcgggtc 2460 gtctgggacc tgtttcgcgg gtgcgccacc ggccccaagc ggcttttcac atgggcgctt 2520 tcgcaagagt ggaatccaat gcccgtcacc acggctttca ctttcccagc cggcacggtc 2580 atcctacaca cagctggtgg ggttcgtgtg gtcgttctcc cgcctggccc tcaatttggg 2640 ttgactgagg tgacacacct ggctgaccat agtggacaag atgatcctgt cgtgccagac 2700 atgttcggcc agacgtggac ggaactgtta tggcgactcc ttaaggtcat cggcaccttc 2760 cttgccaact acggtgtcgc catagcgggg ttgactcttt ccatagctgc cttcaagact 2820 gccaacaagt ccactaggaa cgatcgccaa ggatggctat ccggcagcgg tgtcgcactg 2880 tcggacgagg agtatgacga gtggatgaag tactcaaaga agaaaggcaa gaagatcaac 2940 gcagatgagt tcctccaact gcgccacagg gccgcgatgg gcaacgatga tgatgatgcc 3000 cgcgactacc gctcctttta cacggcctac caacttggtc gtgaaggcaa caactgcgaa 3060 gaccttccat tacatccagc agttggacca acaacaggcg gcggctacta cgtgcacatc 3120 ggcaatggtg tcgggatcac ccttaaacat gttgcctcgg gcgaggatgt catcaaggag 3180 ctcggcaacg accttgttaa gatcagggcc aggcaccaca aaatgggaga tcccgccatg 3240 gtcgttggcg aaggcgcccc ggttaagttt gtgaccggcc acctggtggt tgacgctcgt 3300 aacgagtcgg ttgtgttcga ccaaacccga ctgagcgtgg tgagggtcaa ggttcctggg 3360 cttgagacgc agcgtgggta ctgcggcctc ccgtatgtca acagtgctgg gcacgttgtt 3420 gggctccacc agggctcata cggcgtcggt gacaaggtct tcacgcccat cactgacgcg 3480 ccggcagcct cgcccgatac catcatgtgg cgcgggctcg agtgcaccag atctgacatt 3540 gtgacccatc tgccccacgg cacgaagtat tccatatccc caggcatgag ggaagaggcg 3600 cacaagtgca cccaccagcc agcttccctg ggtcggaacg acccgcggtg caatcagacc 3660 caggtagcaa tggtggtcaa agccttaaca ccatacacta gcgcccccgc cattgagaag 3720 cttgacccct gcatggttgc ggccatcacg gaggtgcgca ccgcaatcca atcattaaca 3780 cctaagggag gcttccggcc gttaaccttt gcggctgcat ggcagagtct ggacttgtca 3840 acttccgcag gtgccctcgc cccaggtaag actaaaagag atttgtgtga ccccgacacg 3900 ggcatgccgg ctgggaaata cagagagatg ctgctggcag cgtggtcaag ggcgggaaca 3960 ggcacgccct tggaccacac ctacatagtt gccctaaaag atgagctgcg gcccgtcgag 4020 aaggttgccg agggcaaacg gaggctcatc tggggtgcag atgcccgcgt tgcgctcatt 4080 gcatctgcgg cactcacccc cgtggcaaat gccttaaaaa cagtgacaaa cctcctcccc 4140 atacaagtcg gcgttgaccc gtcgagcgcc aactgtgtgt cctcctgggt tggccggttg 4200 caacggcatg atcactgcct tgagctcgat tattcaaagt gggactccac catgtcccct 4260 gtcattatca atattgcaat tgatatcctg tgcaacactt gcggcagtga tagcctgcgc 4320 atggcagtgg cccaaaccct taagagccgc cccactgctc tagttgaggg cgtctctgtt 4380 cccacaaagt cgggcctccc gtctggcatg ccctttacaa gccaaattaa ttcaattgtg 4440 cattggatcc tgtggtctgc caccgtgcga aagtgttctt tgcccctgca catcgggtcc 4500 gtcaatgaac ttgccccgtt tctaacctat ggggacgacg gcctttatac catcccctcc 4560 caccttacca agagtataga tgagatcatt tccaccctga aagggtacgg gctctcccca 4620 accgcaccag ataagggagc aaatgtagag attaaaagga cctccttcac ctacttgtct 4680 ggccctgtgt ttttgaagcg tcgcattgtg ctgacccccg gggggcaccg tgccctccta 4740 gacctcacct cgcttgcccg tcagcccgtt tgggtgaatg gtccgcggcg ctcggtgtgg 4800 aaccacgagg cccagcccat tgagatcgac gctgagacca gaaccatcca actccagaat 4860 gttttgattg aattggcgtg gcatcaaccc caagattttg atcatgtttt ggccttagtt 4920 gttaagtccg ctgaggcctc tgggctgacc atccccaggt attctcaaga agaagcccgt 4980 gccatctacg acgggcgcta ttatggcatc caacatgtga gtctgccaaa caatagtgat 5040 ttaattagag aaggaaacat gagtgacaac aaaagcaccc cagagcaaca gcatgagtca 5100 tcgcgtgcga tggacgctgg cgccaccggc gccgccgcag ctgcgcctgc cccacctgtc 5160 gcggccgcac cggctagtgg cttggtgggc gcgcttgttg ctgaacccca gtcaggcccg 5220 agcgctgaac agtggcggac tgcctacacc cttttcggca ctgtctcctg gaacgctaat 5280 gccggccccg ggacgatcct cacagtgggg cggctcgggc cgggcatgaa cccttacacc 5340 cagcacatcg ctgcaatgta cggaggttgg gccggcggca tggatatcag aatcaccatt 5400 gctgggtctg ggttcatcgg cggcacactt gccgtcgctg ccattccacc aggcgtggac 5460 ccggagagtg tcaatgtgct gcgcatgccg catgtgctca ttgatgcccg cggcggcgtg 5520 ccacttgagg tgacattgga ggacatccgg acatcccttt accacccgat gggggacacc 5580 aatactgcgt cattggtgat cgccgtcatg actgggctca tcaaccccct aggtactgac 5640 accctgtcgg tcacagtgca gcttgagact agacctggtc gtgattgggt cttcttttcg 5700 ctgctgcccc ccactgcggg tgtggcttcg gccgacccat cacaactcct caccagggtg 5760 gcccttgcca cctcgccaga ggtgcgcttc ggcacggggg tgcttggtat tctcgggtta 5820 ccatcaaacc catctgtcaa ccgagtctac gacgtgcaat cccgcacgcg cgggtggagc 5880 ttccccatcc ccagctctag cgtgttcatg ggggacgcca ggaatgttga acacaaccgg 5940 cgagtcatgg ttcaatcatc agccccaaac aaccccctct cagatgtgtt ccccgatggc 6000 tttccagatt ttgtgcccca atcagacacc gaaccggacg gcggtgccgt catcgccggc 6060 caggtgctcc cacacccagg agacaacgac aacttctgga ggctcacccc agtggtacgc 6120 ggtaatacca cagcagctat caacaccatc cctgaacggt tcaaccaagt gtactttatt 6180 aacctcgccg atgaggaagc cgtgagtgcg gcgaccgagg agctgaggtt caatggcatc 6240 cagggcatat ttggccagcg caccaacgcg cgtgctgttc aagttatgca ggggtacgtc 6300 ccgcgggctg aacacatcat ccggcccgct gggtttgccg gcgtgggtcc gcaagggccc 6360 aacgtgccca tcggcttcgc tgggaccatg ccaaatttca atgcaacagc cagcggagca 6420 gacgacctgg tgcctgtctg ggggcctacc ctagtacaca ctgcctcctt gttggcgggc 6480 accacgtacg agctggccga gaattcaatg tacgtgttct ctgtgagcac gtccacttcc 6540 acctttgaac ttggcatgct cgccaacggg acctggctag gccctgcaca gctcgctggt 6600 acgggcatca cttggactga agttctttct gtcacctaca tgggaatgcg ctttgcctac 6660 aatcctttga gtgggcaggg cataggtggt gaatccagga gattgtaata tggctagtgc 6720 tgccacagct gggttgacat tgttgtctgg cggtgctagc attgccgccg acattgcatc 6780 tatagtcact gagcagcaaa gattggcatt gcaaaaggag caaattcgga acaactatga 6840 gcttggcaag caatccttgt ccctgcaaca acaggccatg gagaattcca gggataggat 6900 tagattgtct gctgcccaaa tcaaagaatt aggccttgat ccaaaatctg agttgaacat 6960 gctcatgggg ctgacggctg gtgcccagcc ccctattagt acccctattt ccagtgagca 7020 gttgtttttg aattcatcca atttggcacg ctccgtccgt tgggacgcga ggaattttgg 7080 tgaggccatt aacacctttg ctggcctccg tgccaaacat caggcaaatc ccaatcgccc 7140 ggacatgatg ctgggcagtg ataatcccaa ctggggcgct cgtgctacag gcgatgccct 7200 atcagtgagc ggcctgtccg tcaggtccaa ccactttggg tcaggccctt cctcattggg 7260 ctcactgagc tctgtgcgct ctaacccttt ttcctccatt agctcggggt ccgtgggagg 7320 tatttcgctt cgcacggtgg gttcacggcc atcaatcagg tcggtgttct cgaccacgag 7380 tgtttgaaat ttgttttcct ctttaattaa tcaaatgcat tgtgagtttt gtttttgatt 7440 ttgttttgat ttgg 7454 //