ID DQ011234; SV 1; linear; genomic RNA; STD; VRL; 4764 BP. XX AC DQ011234; XX DT 01-MAY-2006 (Rel. 87, Created) DT 01-MAY-2006 (Rel. 87, Last updated, Version 1) XX DE Lisianthus necrosis virus, complete genome. XX KW . XX OS Lisianthus necrosis virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4764 RA Jan F.-J., Chang C.-H.; RT "Complete genome sequence and genetic organization of Lisianthus necrosis RT virus: suggests it should be re-delineated from Necrovirus into RT Tombusvirus"; RL Unpublished. XX RN [2] RP 1-4764 RA Jan F.-J.; RT ; RL Submitted (18-APR-2005) to the INSDC. RL Department of Plant Pathology, National Chung Hsing University, 250 RL Kuo-Kuang Road, Taichung, Taiwan 402, Taiwan XX DR MD5; f07b23335b2b3cbf3bea9d2d6873dfcb. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00176; Tombus_3_IV. DR RFAM; RF00510; Tombus_IRE. XX FH Key Location/Qualifiers FH FT source 1..4764 FT /organism="Lisianthus necrosis virus" FT /host="lisianthus plant" FT /isolate="L" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /db_xref="taxon:334425" FT CDS join(165..1052,1056..2621) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF1 readthrough protein; ORF1RT" FT /db_xref="GOA:Q1L726" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q1L726" FT /protein_id="AAY98781.1" FT /translation="MDRLLNFLRPKKEIFVGDFAIGVDRRPSMDMFQLVCRLALRYMRT FT GKIECNVDSLSQFVVELLKTDCAAKWEWFMKRRSASDYAIPLALAALPIAPLLGYATKV FT RTVSVKAFGNELTFPFRTLRPSLPRKGLLLRLAAGLALAPVCALAVYATLPREKLSVFR FT LRTEARTHMEDEREATECLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT VAQVARAKVGYLKNSPENRLIYQRVIIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSSESLGVKGGLVRLPGVVTQTNRDIPSGVLLPQEVLEVRTGPPNAKDRSIFM FT VAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGILTRTPQPAKGAFSRLSPFRKAVC FT EKVGVAHRLGYDGFLSYYSGAKLRTYTRAVESLHISPVCERDSYLTTFVKAEKISTSKG FT DPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGQIFRDKW FT DKFDRPVAIGLDASRFDQHCSVEALQFEHSFYRAMYPGNKLLSKLLEWQLHNKGKGYVP FT DGTITYRKEGCRMSGDINTSLGNYLLMCAMIYGYMRHLGINEYSLANCGDDCTLIVERK FT HLKRIQGTLPEYFLNLGYTMKVEPPVFQLEEVEFCQAHPVQFEGGWKMVRNVRTAMSKD FT VHCVNNIKDLATRKAWSNAQHHGGIALSAGIPVVEKFYSRFALYEMPKRHQRIDTVTNV FT HKWRGSGGKYSVTPESRASFWQAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSIL FT DSAVA" FT CDS 165..1055 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF1" FT /db_xref="GOA:Q1L725" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q1L725" FT /protein_id="AAY98780.1" FT /translation="MDRLLNFLRPKKEIFVGDFAIGVDRRPSMDMFQLVCRLALRYMRT FT GKIECNVDSLSQFVVELLKTDCAAKWEWFMKRRSASDYAIPLALAALPIAPLLGYATKV FT RTVSVKAFGNELTFPFRTLRPSLPRKGLLLRLAAGLALAPVCALAVYATLPREKLSVFR FT LRTEARTHMEDEREATECLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT VAQVARAKVGYLKNSPENRLIYQRVIIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSSESLGVK" FT CDS 2647..3813 FT /codon_start=1 FT /product="coat protein" FT /note="ORF2" FT /db_xref="GOA:Q1L724" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q1L724" FT /protein_id="AAY98782.1" FT /translation="MEIVRRNNNNAIAINKKQLASMAATAAAGALSNYVKNNGAMIVQG FT AVNMGKKAYGAVRNRRNKGNSQAMVHVGGMGGAMMAPVAVSRQLVGSKPKFAGRTAGSV FT TVTHREYLTQVNNSPAFTTNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYVFNSVVLH FT YVPLCGTNEVGRVAMYWDKDSEDPEPVDRVELANFGILKETAPWAEAILRVPTDKTKRY FT CDDSTVVDRKLIDLGQLGISTYGGTGTNPVGDVFVSYSVTLYFPQPTNTLLSTRQLSLT FT GALEASTGPGYINVTRTPTLLTITFRSTGTFLLSGVFRDTSVAVLGVAGGIGINSQTTL FT DVVGVATSFLVNCTVSTLPATLTYGSAGITSVTANCTRATRANTATLL" FT CDS 3845..4420 FT /codon_start=1 FT /product="movement protein" FT /note="ORF3" FT /db_xref="GOA:Q1L723" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:Q1L723" FT /protein_id="AAY98783.1" FT /translation="MDTEYEQVNKPWNELYKEATLGNKLTVNVGMEDVEVPLLPSNFLA FT KVRVSLSGGYITVRRVRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTELLDLGKEI FT RLTMQHLDFSVSARSDVPIVFGFEDLVSPFLEGRELFSVPLRWQFGLSAQCYSLPPAKW FT KVMYQEEDLKALKPSKKKASKTDSSRLE" FT CDS 3877..4395 FT /codon_start=1 FT /product="p19 protein" FT /note="ORF4" FT /db_xref="GOA:Q1L722" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:Q1L722" FT /protein_id="AAY98784.1" FT /translation="MERAIQGSDAREQAYSERWDGGCGGTITPFKLPGESPSLIEWRLH FT NSEESEDKDNPLGFKESWSFGKVVFKRYLRYDGTEASLHRALGSWERDTVNDAASRFLG FT FGQIGCTYCIRFRGSCLTISGGSRTLQRPIEMAIRTKRTMLQLAPCEVEGNVSRGRLEG FT TEAFKEESE" XX SQ Sequence 4764 BP; 1216 A; 1020 C; 1332 G; 1196 T; 0 other; agaaattcct cagatttctc cctgtgaccc ggggttatcg gtgagttgcg cttgtgcttt 60 gcgtaaggga tttctctcgt acgggtacga tctacggacc agctacgggt ttgaagggcg 120 ggcctattct tcggaagggt aaattgtaac ttccgccaat aagcatggat agattactga 180 actttctgag acctaagaag gaaattttcg taggtgattt tgcgatcggg gttgacagga 240 ggccatcgat ggacatgttc caattggtgt gtaggttggc tctcagatat atgaggacag 300 ggaaaatcga gtgtaatgtg gacagtcttt cacagttcgt tgttgagttg ttaaagactg 360 attgtgcagc caagtgggaa tggttcatga aacggcgttc cgccagtgat tacgctatcc 420 ctcttgcact ggctgcactg cccattgctc cgctgttggg ctatgccacg aaggttagaa 480 cggtgagtgt aaaggcgttc gggaatgaat tgactttccc attcaggacc cttcgcccaa 540 gtctcccccg taagggcttg ctccttcggc tggcggccgg ccttgcgtta gcacctgtat 600 gcgcgcttgc tgtgtacgct accctaccac gggaaaaact gtctgtattt aggctgagaa 660 cagaagcccg cacacatatg gaggatgaga gggaagcaac ggaatgtttg gtggttgagc 720 cagctcgaga gctcaagggg aaggacgggg aggatctcct cactggtagt agaatgacga 780 aggtaattgc gtctacggga cgccctcgca ggagacctta tgcagctaaa gttgctcagg 840 ttgcaagagc taaggtgggt taccttaaga atagtcctga gaatagatta atctaccaga 900 gagtcattat tgagatcatg gacaaggatt gcgtcaggta tgttgacagg gatgtcatat 960 tgcctttggc tattggatgt tgttttgtct acccggacgg agtggaggag tcggcggcac 1020 tctggggctc tagtgagtcc ctgggtgtga aatagggagg cctagtgcgt ctacctgggg 1080 ttgtgacaca gaccaatcga gatatcccat ctggtgtgtt acttccccag gaagtgctag 1140 aggttcgcac aggacctccc aatgctaagg accgtagtat attcatggtt gctggttgcc 1200 catcacaggc acggttctta gttcataatc attgcctgaa aaaccttaag aggggtcttg 1260 tggagagagt tttctgtgtt gagagaaacg gaattctcac tcgcactcca caacctgcca 1320 aaggagcctt tagtcgtctt tccccgttca ggaaagcggt ttgtgagaag gtcggagttg 1380 cccaccgtct tgggtatgat gggtttctat catactacag cggtgcgaag ctgcgtactt 1440 acacgcgagc cgtggagagt ctgcatatct cccccgtctg tgagagggac agttatttga 1500 ctaccttcgt caaggcggag aagatatcga cgtctaaggg tgacccagcg cctagggtga 1560 tacagcctcg taaccctagg tacaatgtgg aacttggaag atatctgcgg catatggagt 1620 ccaaactaat gaaagctgta gatggcgtgt ttggtgaaac gacatgcatt aagggctaca 1680 ccgctgatga ggtggggcag atctttaggg acaagtggga caaatttgat cgtccagtcg 1740 ctattggtct tgatgcctca cggtttgatc aacactgttc ggttgaagcg ttgcaatttg 1800 agcatagctt ctacagggcc atgtaccctg gcaacaagct cttgagcaag ttgctcgaat 1860 ggcaactcca caataaaggg aaaggatatg tgcctgatgg cactatcacc tatcgtaagg 1920 agggttgtcg catgagtggg gatataaaca catcacttgg taattacctg ttaatgtgtg 1980 ccatgattta tggttatatg cgccatttgg ggatcaatga gtatagtctg gcgaactgtg 2040 gggatgattg cactctcatt gtggaacgca agcatcttaa acggatacaa ggtacactac 2100 ccgagtattt cctaaatctg ggttatacta tgaaggtgga accccctgta tttcaattgg 2160 aggaggttga attctgccag gcacacccag tacagtttga aggtggttgg aagatggtcc 2220 ggaatgtccg taccgctatg agcaaggatg tacactgtgt caacaatatt aaagatctgg 2280 ctacacgcaa ggcgtggagt aatgcacaac accatggtgg tatagcactt agtgctggca 2340 tacccgtggt agagaagttt tactcccggt tcgctttgta tgagatgcca aagagacacc 2400 aaagaattga cacagtcaca aacgtgcaca agtggcgtgg atcgggtgga aagtatagtg 2460 tgacccctga gtcaagggca agcttttggc aagcctttgg cctgacgggg gatgagcagc 2520 ttgctttaga ggaccgtctg gatagatggg agatggacct atttggagaa gagggtgttg 2580 acgctcatga gcccagcatc cttgactccg ccgtagcttg accaagtgaa cacaagcgac 2640 atagcaatgg aaatcgttag gagaaacaat aataatgcaa tcgcgatcaa taagaaacag 2700 ctggcctcta tggcggctac tgccgccgct ggggctctga gcaattatgt gaagaacaat 2760 ggagcaatga ttgtacaagg tgcggtgaat atgggcaaga aagcttatgg agcagtaagg 2820 aatcgtagga ataagggtaa ttcacaggcg atggtgcacg taggtggtat gggcggggct 2880 atgatggccc ctgtggcagt atcccggcaa cttgtgggca gtaagccaaa gttcgcaggt 2940 aggactgctg gatcagtcac agtcacccac cgtgagtact taacccaggt gaacaactcc 3000 cctgctttta caaccaatgg aggtattgtc gggaatttgt tacaactcaa cccgcttaat 3060 ggcacactgt tttcgtggtt accggctatc gcgtcgaact tcgatcagta cgtctttaac 3120 agcgttgtgt tgcattatgt ccccctctgt ggcacaaatg aagtagggcg tgttgcaatg 3180 tactgggata aggactctga ggatcctgag cctgtggata gagtggaatt agctaatttc 3240 ggtatactta aagagacggc cccatgggcc gaagctattc tgagggtccc aactgataag 3300 acgaaacgat actgcgatga cagtacagtg gttgacagga agcttatcga cctcggacag 3360 ctcggaatat ctacatatgg agggaccgga actaatcctg tgggggatgt gtttgtgtcg 3420 tatagcgtta cgctttactt cccacaaccc acgaataccc tactcagcac acgacagctt 3480 agccttactg gcgccctaga agcatctact gggcccggat atattaacgt aacacgtaca 3540 ccaacgctct tgacaataac attcaggtct accggaactt tcctgctttc gggggttttc 3600 cgggatacta gtgttgctgt tcttggtgtg gcggggggca taggaattaa tagtcagacc 3660 acacttgatg ttgttggcgt agccacatca ttccttgtga actgtacagt gtccacacta 3720 cccgctacac tcacatatgg atctgctggg ataacatctg tcactgcgaa ttgcacacgg 3780 gccacaaggg ccaacaccgc aacattgcta tagtcgcctc ggggcctctt gaacagacca 3840 gtttatggat actgaatacg aacaagtcaa taaaccatgg aacgagctat acaaggaagc 3900 gacgctaggg aacaagctta cagtgaacgt tgggatggag gatgtggagg taccattact 3960 cccttcaaac ttcctggcga aagtccgagt ctcattgagt ggaggctaca taacagtgag 4020 gagagtgagg ataaagataa tccccttggt ttcaaggaaa gctggagttt cgggaaagtt 4080 gtatttaaga gatatctcag atacgacggg acggaagctt cattgcacag agctcttgga 4140 tcttgggaaa gagatacggt taacgatgca gcatctagat ttctcggttt cggccagatc 4200 ggatgtacct attgtattcg gtttcgagga tcttgtctca ccatttctgg agggtcgcga 4260 actcttcagc gtcccattga gatggcaatt cggactaagc gcacaatgtt acagcttgcc 4320 ccctgcgaag tggaaggtaa tgtatcaaga ggaagacttg aaggcactga agccttcaaa 4380 gaagaaagcg agtaagacag actcttcacg cttggagtga agtttggtgg cagctataca 4440 ccttagacca ctggttacta ctgtcaggtt ggaacccaca ctaattgagc taggccgggc 4500 cccgtcgtag gtttggtcac ctacggaatg gggatatgga aaggatctcg taccctgtga 4560 gtcaaacgaa agttgtgctt gggatatggg tctatgccta gtaggttatg tggtgtgtct 4620 ctgactttaa ttggatgcca gttttcaaca ggagtggcag cgactgaaca acactttgag 4680 cacggttgat ctcatccttc gggggggcta tagagatcac cggaagcact accggacaac 4740 cggaacattg cagaaatgca gccc 4764 //