ID   DQ006805; SV 1; linear; genomic RNA; STD; VRL; 2414 BP.
XX
AC   DQ006805;
XX
DT   01-MAY-2005 (Rel. 83, Created)
DT   01-MAY-2005 (Rel. 83, Last updated, Version 1)
XX
DE   Cucumber mosaic virus 3a protein and coat protein genes, complete cds.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2414
RA   Davino S., Lombardo A., Bellardi M.G.;
RT   "Cucumber mosaic virus infecting Thevetia nereifolia Juss. ex Steud. and
RT   Nandina domestica Thumb.";
RL   Unpublished.
XX
RN   [2]
RP   1-2414
RA   Davino S., Lombardo A., Bellardi M.G.;
RT   ;
RL   Submitted (13-APR-2005) to the INSDC.
RL   Dipartimento di Scienze e Tecnologie Fitosanitarie, University of Catania,
RL   Via S. Sofia, 100, Catania, Sicily 95123, Italy
XX
DR   MD5; 3f9d8cf6b9846288537507c1ed7b4f2c.
DR   EuropePMC; PMC4188193; 25674612.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2414
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Thevetia nereifolia"
FT                   /isolate="vir56"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /db_xref="taxon:12305"
FT   CDS             121..960
FT                   /codon_start=1
FT                   /product="3a protein"
FT                   /note="movment protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q52H15"
FT                   /protein_id="AAY19284.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASLFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTEAE
FT                   GSLRIYLADPGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIKSSQYVLTDSKINQNARSESEDLNVESPPIAIGSSSASRSEAFRPQVVNGL"
FT   CDS             1260..1916
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q52H14"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q52H14"
FT                   /protein_id="AAY19285.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADATFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 2414 BP; 555 A; 575 C; 581 G; 703 T; 0 other;
     gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtgtcg cgtcgtgtcg agtcgtgctg        60
     tccgcacatt tgagtcgtgc tgtccgcaca ttttctttca gtgtgttaga ttcccgaggc       120
     atggctttcc aaggtaccag taggacttta actcaacagt cctcagcggc tacgtctgac       180
     gatcttcaga agatattatt tagccctgaa gccattaaga aaatggctac tgagtgtgac       240
     ctaggccggc atcattggat gcgcgctgat aacgcaattt cagtccggcc cctcgttccc       300
     gaagtaaccc atggtcgtat tgcttccctc tttaagtctg gatatgatgt cggtgaattg       360
     tgctctaaag gatatatgag cgtccctcaa gtgttgtgtg ctgttactcg aactgtttct       420
     acagaagctg agggatcctt gagaatttac ctggctgatc caggcgataa ggagttatct       480
     cctatagatg gacaatgcgt atcattacat aaccatgatc ttcccgcttt agtgtctttc       540
     caaccgacgt atgattgtcc tatggagact gttgggaatc gtaagcggtg tttcgctgtt       600
     gttatcgaaa gacatggtta cattgggtac accggcacca cagcaagcgt gtgtagtaat       660
     tggcaagcac ggttctcatc taagaacaat aactacactc atatcgctgc tgggaagact       720
     ctagtactgc cattcaacag attagctgag caaacgaaac cgtcagccgt cgctcgcctg       780
     ttgaagtcgc aattgaataa cataaaatct tcgcaatacg ttttaacgga ttcgaaaatt       840
     aatcaaaatg cgcgcagtga gtccgaggat ttgaatgttg agagccctcc catcgcaatc       900
     gggagttctt ccgcgtcccg ctccgaagcc ttcagaccgc aggtggttaa cggtctttag       960
     cgttttcgtt gcgaattaga ttatatgtat tgtgagtctg tacatattac tatatctata      1020
     gtgtcctgtg tgagttgata cagtagacaa ctgtgacgcg atgtcgtgtt gagaagagag      1080
     cacatctggt ttagtaaacc cacatcataa ctttgaggtt caattcctct tgttccctga      1140
     tgggtccctt tacttttcac ggatgcttct ccacgagatt gcgtttcgtc tacttatcgt      1200
     aatagtatat tgtgctgtga ttttctcttt cgtgttgtag atttgagtcg agtcgagtca      1260
     tggacaaatc tgaatcaacc agtgccggtc gtaaccgtcg acgtcgtccg cgtcgcggtt      1320
     cccgctccgc ttcctcctcc gcggatgcta catttagagt cctgtcgcaa cagctttcgc      1380
     gacttaataa gacgttagca gctggtcgtc ctactattaa ccacccaacc tttgtaggga      1440
     gtgagcgttg tagacctggc tacacattca catcgattac cctaaagcca ccaaaaatag      1500
     accgcgggtc ttattatggt aaaaggttgt tacttcctga ttcagtcact gagttcgata      1560
     agaagcttgt ttcgcgcatt caaattcgag ttaatccttt gccgaaattt gattctactg      1620
     tgtgggtgac ggtccgtaaa gttcctgcct cttcggacct atccgttgcc gccatctctg      1680
     ctatgtttgc ggacggagcc tcaccggtac tggtttatca gtacgccgca tccggagttc      1740
     aagctaacaa caaattgttg tatgatcttt cggcgatgcg cgctgatatt ggtgacatga      1800
     gaaagtacgc cgtgctcgtg tattcaaaag acgatgcgct tgagacggat gagctagtac      1860
     tccatgtcga cattgagcac caacgtattc ccacatctgg ggtgctccca gtttgaactc      1920
     gtgttttcca gaaccctccc tccgatttct gtggtgggag ctgagttggt agtgttgcta      1980
     caaactacct gaagtcacta aacgctctgc ggtgaacggg ttgtccatcc agcttacggc      2040
     taaaatggtc agtcgtggag aaatccacgc cagtagactt acaagtctct gaggtgcctg      2100
     gcagaaggtg ctttctgaaa cctccccttc ctctccctcc ggttttctgt ggcgggagct      2160
     gagttggcag tgttgctata aactgtctga agtcactaaa cacattgtgg tgaacgggtt      2220
     gtccatccag cttacggcta aaatggtcag tcgtagagaa atctacgcca gcagacttac      2280
     aagtctctga ggcacctttg aaaccatctc ctaggtttct tcggaaggac ttcggtccgt      2340
     gtacttctag cacaacgtgc tagttttagg gtacgggtgc cccccacttt tgtggggcct      2400
     ccaaaaggag acca                                                        2414
//