ID DQ000985; SV 1; linear; genomic RNA; STD; VRL; 6412 BP. XX AC DQ000985; XX DT 01-MAY-2006 (Rel. 87, Created) DT 11-JAN-2007 (Rel. 90, Last updated, Version 2) XX DE Pepino mosaic virus isolate Ch2, complete genome. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6412 RX DOI; 10.1007/s11262-006-0003-x. RX PUBMED; 16927118. RA Ling K.-S.; RT "Molecular characterization of two Pepino mosaic virus variants from RT imported tomato seed reveals high levels of sequence identity between RT Chilean and US isolates"; RL Virus Genes 34(1):1-8(2007). XX RN [2] RP 1-6412 RA Ling K.-S.; RT ; RL Submitted (06-APR-2005) to the INSDC. RL U. S. Vegetable Laboratory, USDA, ARS, 2700 Savannah Highway, Charleston, RL SC 29414, USA XX DR MD5; 8cb0b7cdc076d702bf374406576106b6. DR EuropePMC; PMC3132167; 21702943. DR EuropePMC; PMC3356388; 22623984. DR EuropePMC; PMC3639891; 23587202. DR EuropePMC; PMC3676362; 23762294. DR EuropePMC; PMC3957916; 24390328. XX FH Key Location/Qualifiers FH FT source 1..6412 FT /organism="Pepino mosaic virus" FT /host="Lycopersicon esculentum" FT /isolate="Ch2" FT /mol_type="genomic RNA" FT /country="Chile" FT /isolation_source="seed" FT /db_xref="taxon:112229" FT 5'UTR 1..85 FT gene 86..4402 FT /gene="RdRp" FT CDS 86..4402 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /note="replication" FT /db_xref="GOA:Q1L7W5" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q1L7W5" FT /protein_id="AAY51619.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHSIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD FT RCHNLKTLMATVVLPVEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLD FT WLKYSRFVGQDPLTGLRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT IVNYFAYVSELSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVVSTHTEIGQAICKAATIYKERRQLTNLVKQGVVTLADFKEADQQVE FT YTHFDPEFKSTVEPHRSYENAINNLGIEINEDVPESSGTNETLLNNEISLAMSSAEHVQ FT AVQEIESLLSNPEAAPILPPAHVKTWASLASDTSSTKNREIEDIVAKLEIQRNEASCSY FT LQPNKELSKPKAADNNLPWNAWIPLLNAHGFKGDQLQYGPDGNLIQPIQDINNSQPRSD FT YPSSLPCELVETLRKIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCNQSKEWKESFAF FT KMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLHK FT LPMEHIKTFEKAMIQPGFPIVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVYH FT ESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHAL FT QKCKVPILVPSQMKKSAMLDIGHKSMTYAGCQGLTAPKVQILLDNHTQHCSDRVLYTCL FT SRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAP FT VTHFPIANGNNLEKLASALPEKFAREIYDKHHGYSNTIQTENPVVQLFQHQQAKDETLF FT WATIEARLSITTPEANLREFLLKKDVGDILFFNYHNAMCLPADPVDFEEKTWEICAAEV FT KNTYLAKPMANLINAASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQ FT QTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNKFVKDGWNFNRTAQTNDFTAFD FT QSQDGAMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTE FT CSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQVKGD FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQLHDYL FT TLDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH" FT gene 4428..5132 FT /gene="TGB1" FT CDS 4428..5132 FT /codon_start=1 FT /gene="TGB1" FT /product="TGBp1" FT /note="triple gene block 1 protein" FT /db_xref="GOA:Q1L7W4" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q1L7W4" FT /protein_id="AAY51620.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFLEPKLAIFGDPCQC FT TYIERLRIPNYTSFRTHRFGKSTAALLNKLFDLNIESVKVQGDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGFEFSEVTFYCTTLAGAVQENPAKTFISPTRHTSK FT LRIGELNARSDS" FT gene 5113..5484 FT /gene="TGB2" FT CDS 5113..5484 FT /codon_start=1 FT /gene="TGB2" FT /product="TGBp2" FT /note="triple gene block 2 protein" FT /db_xref="GOA:Q1L7W3" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q1L7W3" FT /protein_id="AAY51621.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNQFSFSISRNIHQH FT HCYNTHSATQTGQSVPGHH" FT gene 5336..5584 FT /gene="TGB3" FT CDS 5336..5584 FT /codon_start=1 FT /gene="TGB3" FT /product="TGBp3" FT /note="triple gene block 3 protein" FT /db_xref="GOA:Q1L7W2" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q1L7W2" FT /protein_id="AAY51622.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVIFTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT gene 5630..6343 FT /gene="cp" FT CDS 5630..6343 FT /codon_start=1 FT /gene="cp" FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:Q699Z5" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q699Z5" FT /protein_id="AAY51623.1" FT /translation="MENQPTASNPSDAPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6344..6412 XX SQ Sequence 6412 BP; 2047 A; 1461 C; 1160 G; 1744 T; 0 other; gaaaacaaaa cataacacat aatatcaaaa gtgaccaaac acaacataac cacgtggaaa 60 aacagcgaaa gcactttacc acattatgtc tcgtgttaga aacactttag aaaagatcag 120 ggacccacaa gtacaatcta gcatttgtga agccgcttac caacatgtta gacctgtgct 180 caaggaatcc ctaatcaact gtccttatgc gctcaatgac tatgaagcag acacccttga 240 gaatttaggt gtcacaataa atccccatgc aatccaaaca catactcatg cagcagctaa 300 agttgtggaa aatagaatgc tcgaaattgt tggacaccac ttgcccaagg acgagaaagt 360 taccttcatt ttcctcaaaa gaagcaaact gagatacatg cgaagagctg ctgtacataa 420 agatgttttt gttaatcaca gtatagaacc caaggatttc ttcaggtatg acgaggaatc 480 tacatctact agcttctccg tgaacactag gatcgcttac atctcagatt ctctacattt 540 catggaacca gctgatgtga cccacctctt cgaccgttgc cacaatctta aaacactgat 600 ggcaactgtt gttttacctg ttgaagccat ccacaaacaa acatctttat ttccagcgat 660 atactccatt aactacaatg aagaaggttt tgagtatatc cctggttctc atggtggagg 720 ggcatacttt cataagtatg aaacattaga ctggctcaaa tactctagat tcgttggcca 780 ggacccctta actggactcc gatacaccat aaccattcaa atggtggaga gtttaggagc 840 caaccacctt ttcctcttcc aaagaggaaa ctttgaaacg cctttatata ggacgtttca 900 aaaaaatagc tttgtgacct ttcctaacat cttccatccc caacatgtta atgccacaaa 960 gcccatgcca agatccaggg caattcagct gtatttatat gtcaaatctg tcaataaggt 1020 gacacaaaga gatatctttg cgaaagtaag gcaacttata tctacagctg aacttgaatt 1080 gtatgaccct gatgaactta cacatattgt caattatttc gcatatgtct cagaactaag 1140 ctcaatcaac gactatgaca atatgctcaa atcaagtttt ttcaaaaaac ttgttgcacc 1200 catgcaacat gactggaggt gcatgattga attctttcgg ggaaaaagtg atttcaatca 1260 acttttaact gctcttcaat ggaaagactt ctcttacact attaaaactg aagagttagt 1320 tgtttctaca cacactgaaa ttggccaggc aatctgtaaa gctgcgacca tatacaaaga 1380 aagaagacaa ttgaccaatt tagtcaaaca aggcgtagta acattagctg atttcaaaga 1440 agcggaccag caagtggagt acactcactt tgatcctgag tttaaatcca ctgttgaacc 1500 ccaccggagc tatgaaaatg ccatcaacaa tcttggcatt gaaattaatg aggatgtacc 1560 tgaaagttcc ggcactaatg aaacattgct taacaatgaa atatctttag caatgtcatc 1620 tgctgaacat gtgcaagccg ttcaagaaat tgagtcttta ctctctaacc ccgaagcggc 1680 gccaatattg ccccctgcgc atgttaaaac atgggctagc cttgcatctg acacttccag 1740 cactaaaaac cgtgaaattg aagatatagt ggctaagctg gaaatacaaa gaaatgaagc 1800 tagttgcagc taccttcaac caaataagga attgtcaaaa cccaaggctg ctgataacaa 1860 tctcccctgg aatgcttgga tcccattgct taatgcacac ggcttcaaag gagatcaatt 1920 acaatacggc ccagatggca acttgataca gcccatccaa gacattaaca attcacagcc 1980 tagatctgac tatccgtctt ctctgccatg tgaacttgtg gaaactttga ggaaaattaa 2040 gcgtgctgtc tatgccatcc caataagcca caggagggct agtgcttaca gttctgacat 2100 caaaaataac agaactggca aacttctctg caaccaaagc aaagaatgga aagaaagctt 2160 tgctttcaaa atgcaacacg aagacatcgt caaatcaggt gttgtcatac atggttgcgg 2220 aggttctggc aaatcccagg cattacaaaa cttcttgaga acattgggtg attcaaatga 2280 ttgctgtact gttgtagtac ccactgttga acttagaaat gactgggtaa acaaactcca 2340 taaattgccc atggagcaca tcaaaacatt tgagaaagca atgattcaac ctggctttcc 2400 aattgttata tttgatgatt acaccaagtt acctcctggc tacattgaag cctacctatt 2460 tcaccatgcc aacactgagc ttttcatact tactggtgat tctaggcaaa gcgtgtatca 2520 tgaatctaac aatgaagcgt acattgcctc attagatgaa gctgttgcat actacgctaa 2580 ttactgcggt ttttacttaa atgctactca tagaaatgtc cgtagtttag ccaataaact 2640 tggtgtttac agtgagaaag aaggacactt gaaaatcact ttcgcttcac atgccttaca 2700 aaagtgcaaa gtgccaattc tagttccttc tcaaatgaaa aagagtgcta tgttagacat 2760 tggacataaa tccatgacct atgctggttg ccaaggttta acagcaccca aagtacaaat 2820 tctccttgat aatcacacgc aacattgctc tgacagagtt ctgtacacct gtttgtctcg 2880 tgcagttgat tccatccact tcatcaatac tggtcccaac aattcagaat tttgggataa 2940 gcttgaagca acaccatatc tcaaagcctt cattgatgtc tatagagatg aaaaaactga 3000 aatgctcaat tctaagcctg ctgatgatag tccaactgag cctgaagcac ctgttacaca 3060 tttcccaata gcaaatggaa ataacttaga gaaattagct tctgctttgc ctgaaaaatt 3120 tgctagggag atttatgaca agcatcatgg ctactccaac acaatccaaa ctgagaaccc 3180 tgtggtccaa cttttccaac atcaacaagc gaaagacgag acactcttct gggctacaat 3240 tgaagctaga ttgtccataa caactcctga agcaaacctc agagaatttt tgcttaagaa 3300 agatgttggg gacattctct tcttcaatta ccacaatgcg atgtgcttgc ctgccgaccc 3360 tgttgacttt gaagaaaaga cctgggagat ttgtgctgct gaagtgaaaa acacttatct 3420 tgccaaaccc atggccaatc ttattaatgc ggcaagtaga caatcacccg actttgactc 3480 caataagatc tcattattcc taaagtctca atgggtgaaa aaagtggaaa aacttggagc 3540 tatcaaatca aaacctggtc agaccatagc tgcttttatg caacaaacag tcatgttgta 3600 tggtactatg gccaggtact taaggaaaat gcggcaaaga ttccagccaa aacacatatt 3660 catcaattgt gaaaccacaa ctgatgatct caataaattt gtcaaagacg gctggaactt 3720 taacagaacc gcccaaacaa atgacttcac tgcttttgac cagtcacaag atggagcaat 3780 gcttcaattt gaagtcatga aagcaaaatt ttttaacatt ccagctgatg tcattgaagg 3840 ctacatcaac atcaagctga atgctaaaat tttccttgga acactctcaa taatgagact 3900 ttctggtgaa ggtcccacat ttgacgctaa cactgagtgt tcgattgcat acactgccac 3960 aagattccat attgacaata ctgttaagca agtgtatgcc ggtgacgaca tggcgttaga 4020 tggagttgtg agtgaaaaga aatcattcag gaagttgcaa aatctactaa aactcacttc 4080 aaaaacgctg tacccaaaac aggttaaagg ggattacgct gaattttgcg gttggacatt 4140 cacaccaggg ggtataatta aaaatccact taaaatgcat gcctcaatta tgctgcaaga 4200 agccattggc aatctgcaca cagcagccag atcttatgca atcgacatga agcattcata 4260 ccaaatgggt gaccaactgc acgactacct aaccctcgat gaagctgaac aacatttcct 4320 agctgtgaga aagcttcaca aactccatca aggcgaggcc atgcgtcttg gggagaaaag 4380 tccaccaaga tcaacccatt aaggggttaa gttttcccca gtttgaaatg gaaagatcaa 4440 ctttgatcaa tttacttctg ttacacaaat ttgaacacaa gattaacact gaaggaatca 4500 ttgttgtgca cggaattgct ggaactggga aaaccacatt gcttaggact ttattttctg 4560 cataccctag cttagttata ggttcaccta ggccttgtta cttagataaa gctaataaaa 4620 tttcacaggt ttgcctttct tgttttccaa ataccttgtg tgacattgtt gacgagtacc 4680 atctcttaga aagttttctt gaaccaaaac tagccatttt tggtgacccc tgtcagtgca 4740 cttacattga aaggttgaga atacccaact atacatcctt cagaacacac cgatttggca 4800 aatccactgc tgctctacta aacaagttat ttgatcttaa cattgagtca gtcaaagtac 4860 aaggcgacac agtagaatac tttgatcctt tcgcagtgga cccctctgaa cacatttctg 4920 cttcagaaaa agaagttttg gaatttgtag gtgatcaagt tgagactaca agctctgaag 4980 aactagctgg tttcgagttt agtgaagtta ctttctactg taccacactt gctggtgctg 5040 ttcaagaaaa tcctgccaaa accttcattt cacccactag acacacttca aagctcagaa 5100 ttggtgaact aaatgccagg tctgactcct agagctgatc ttactgacac gtacaaaatc 5160 attgctatag cctttctact gtcagcttgc atttacttcc aaaacagtca ttatcaacca 5220 gttgcaggtg ataatttgca cagactaccc ttcggtggtc agtatcaaga cggaactaag 5280 aagatttctt actttccgca gcaacaatct tactttcact caggaaacaa gcttaatgtc 5340 ctcatactta tcttcattct tacactgggt attgtcctca ccaatcaatt tagttttagc 5400 attagccgta atattcacca gcatcattgc tacaacacac attctgcaac ccaaacaggt 5460 caatcagtgc caggtcatca ttgacggtgc agccatagtt ataacaaatt gtccaaacac 5520 acccgaagtt cttaaagcaa tcaacttctc cccttggaac gggttaagtt ttcctcaatt 5580 gtgaaatcat attcattatc tagttaaatt taaacaattt aactcaacta tggaaaacca 5640 acctacagct tctaacccat cagatgcacc accaactgct gctcaagctg gtgcccagag 5700 cccagccgac ttctcaaatc ctaatacagc tccttcccta agtgatttga agaagatcaa 5760 atacgtgtca actgtcactt cagttgccac gcctgctgaa attgaagccc ttggcaagat 5820 ctttactgcc atgggtttag cagccaatga gaccggacct gccatgtggg acctcgctcg 5880 tgcttatgct gatgtgcaaa gttcaaaatc tgcacaactt ataggtgcca caccatccaa 5940 ccctgctttg tctagacgtg cacttgctgc acagtttgat cgtatcaata tcacacccag 6000 acaattctgc atgtattttg caaaaattgt ttggaacata ctgttagaca gcaatgtgcc 6060 acctgccaac tgggcaaaat tgggctatca ggaagatacc aagtttgctg cttttgactt 6120 ctttgatgga gtcacaaacc cagctagtct acagcctgca gatggcctaa ttaggcagcc 6180 caatgaaaaa gagcttgctg ctcactcggt tgctaaatat ggtgcccttg cccgccagaa 6240 aatatccact ggtaactaca tcaccaccct tggtgaagtt acacgtggtc acatgggcgg 6300 cgccaacact atgtacgcaa ttgatgcacc tcctgaactt taaacactcg aaacttaatc 6360 agagtggggt tttctatagt ttattttccc ttagtatcta aatctactaa at 6412 //