ID D90260; SV 1; linear; genomic RNA; STD; VRL; 2359 BP. XX AC D90260; M28349; XX DT 04-SEP-1992 (Rel. 33, Created) DT 21-JUN-2008 (Rel. 96, Last updated, Version 17) XX DE Human rotavirus II type 1 VP4 gene for capsid protein, complete cds. XX KW . XX OS Human rotavirus II type 1 OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Rotavirus; Rotavirus A. XX RN [1] RX PUBMED; 2474677. RA Taniguchi K., Nishikawa K., Urasawa T., Urasawa S., Midthun K., RA Kapikian A.Z., Gorziglia M.; RT "Complete nucleotide sequence of the gene encoding VP4 of a human rotavirus RT (strain K8) which has unique VP4 neutralization epitopes"; RL J. Virol. 63(9):4101-4106(1989). XX RN [2] RP 1-2359 RA Taniguchi K.; RT "Human rotavirus VP4 gene, complete cds"; RL Unpublished. XX RN [3] RX PUBMED; 7514681. RA Zhou Y., Burns J., Morita Y., Tanaka T., Estes M.; RT "Localization of rotavirus VP4 neutralization epitopes involved in RT antibody-induced conformational changes of virus structure"; RL J. Virol. 68(6):3955-3964(1994). XX RN [4] RX DOI; 10.1006/viro.1994.1203. RX PUBMED; 8178429. RA Taniguchi K., Urasawa T., Urasawa S.; RT "Species specificity and interspecies relatedness in VP4 genotypes RT demonstrated by VP4 sequence analysis of equine, feline, and canine RT rotavirus strains"; RL Virology 200(2):390-400(1994). XX RN [5] RX DOI; 10.1006/viro.1994.1397. RX PUBMED; 8030238. RA Burke B., Bridger J.C., Desselberger U.; RT "Temporal correlation between a single amino acid change in the VP4 of a RT porcine rotavirus and a marked change in pathogenicity"; RL Virology 202(2):754-759(1994). XX RN [6] RX DOI; 10.1006/viro.1994.1482. RX PUBMED; 8053149. RA Dunn S., Burns J., Cross T., Vo P., Ward R., Bremont M., Greenberg H.; RT "Comparison of VP4 and VP7 of five murine rotavirus strains"; RL Virology 203(2):250-259(1994). XX DR MD5; 797d0cb1bea983ecf66ea0cb6d7c984b. DR EuropePMC; PMC1081228; 15750112. DR EuropePMC; PMC114321; 11390607. DR EuropePMC; PMC114861; 11264359. DR EuropePMC; PMC125907; 11867517. DR EuropePMC; PMC1346936; 16415027. DR EuropePMC; PMC136071; 11907248. DR EuropePMC; PMC1829060; 17122003. DR EuropePMC; PMC2939698; 20663474. DR EuropePMC; PMC309001; 14662959. DR EuropePMC; PMC538554; 15613323. DR EuropePMC; PMC96021; 11139206. XX CC These data kindly submitted in computer readable form by: CC Koki Taniguchi CC Department of Hygiene CC Sapporo Medical College CC South 1, West 17 CC Sapporo 060 CC Japan CC The 3'-terminal 200 nt of the viral RNA were determined by using CC denatured double stranded virion RNA. XX FH Key Location/Qualifiers FH FT source 1..2359 FT /organism="Human rotavirus II type 1" FT /strain="K8" FT /mol_type="genomic RNA" FT /db_xref="taxon:36432" FT CDS 10..2337 FT /codon_start=1 FT /gene="VP4" FT /product="capsid protein" FT /db_xref="GOA:Q01641" FT /db_xref="InterPro:IPR013320" FT /db_xref="InterPro:IPR035329" FT /db_xref="InterPro:IPR035330" FT /db_xref="InterPro:IPR038017" FT /db_xref="InterPro:IPR042546" FT /db_xref="PDB:5CAZ" FT /db_xref="PDB:5CB7" FT /db_xref="UniProtKB/Swiss-Prot:Q01641" FT /protein_id="BAA14307.1" FT /translation="MASLIYRQLLSNSYVTNISDEVNEIGTKKTTNVTVNPGPFAQTGY FT APVDWGHGELPDSTLVQPTLDGPYQPTSLNLPVDYWMLIAPTREGKVAEGTNTTDRWFA FT CVLVEPNVQNTQRQYVLDGQNVQLHVSNDSSTSWKFILFIKLTPYGTYTQYSTLSTPHK FT LCAWMKRDNRVYWYQGATPNASESYYLTINNDNSNVSSDAEFYLIPQSQTAMCTQYINN FT GLPPIQNTRNIVPVNITSRQIKDVRAQMNEDIVISKTSLWKEMQYNRDIIIRFKFANSI FT IKSGGLGYKWSEISFKPMNYQYTYTRDEEEVTAHTTCSVNGVNDFNYNGGTLPTDFAIS FT RFEVIKENSYVYVDYWDDSQAFRNMVYVRSLAANLNDVVCSGGSYSFALPVGNHPVMSG FT GAVTLTSAGVTLSTQYTDYVSLNSLQFRFRLAVSEPSFSISRTRMSGIYGLPAVNPNNS FT AEYYEIAGRFSLISLVPTNDDYQTPIANSVTVRQDLERQLGELREEFNSLSQEIAVSQL FT IDLATLPLDMFSMFSGIKSTVEAVKSMTTNVMKRFKTSSLANAISDLTSNMSEAASSVR FT LTSVRSVGTITLPRARVSLQVGDDLRSMQDVSTQVSNVSRNLRLKEFTTQTDTLSFDDI FT SAAVLKTKLDKSTQISQQTMPDIIAESSEKFIPKRSYRIVDEDIRFETGIDGTFYAYKV FT DTFNEIPFDMERFNKLITDSPVLSAIIDFKTLKNLNDNYGITKKQAMELLHSNPKTLKE FT FINNNNPIIRNRIENLISQCRL" FT mat_peptide 10..732 FT mat_peptide 751..2334 FT misc_difference 969..971 FT /replace="tgg" FT /citation=[1] FT misc_difference 1112..1114 FT /replace="aag" FT /citation=[1] FT misc_difference 1116..1117 FT /replace="ta" FT /citation=[1] FT misc_difference 1200..1202 FT /replace="aga" FT /citation=[1] XX SQ Sequence 2359 BP; 844 A; 390 C; 460 G; 665 T; 0 other; ggctataaaa tggcttcttt aatttataga cagttattat caaactcata tgttacaaac 60 atctctgacg aagttaatga aattggaact aaaaaaacaa ctaacgttac tgttaatcca 120 gggccattcg cacaaacggg atatgcgcct gttgactggg gacatggtga attgcctgat 180 tctacattgg tgcagccaac tcttgatggt ccataccaac ccacctcact caacttacca 240 gttgattatt ggatgttaat tgcgcctact agagaaggaa aagttgctga aggtacaaat 300 acgactgaca gatggttcgc ttgtgtacta gttgaaccaa atgtgcaaaa tacacaaaga 360 caatacgtat tagatgggca aaatgtccaa ttgcatgtct caaacgattc aagtacttcg 420 tggaaattta tattattcat taaattgacg ccttatggaa cgtacactca atattcaaca 480 ttatcaacgc cgcataagtt gtgcgcgtgg atgaaaagag ataacagagt gtactggtat 540 caaggagcga caccgaacgc atcagagagc tattacttga ccataaacaa tgataacagc 600 aacgtttcaa gtgacgctga attttattta ataccgcaat cgcagaccgc tatgtgtaca 660 caatatataa acaatggttt accaccaatt cagaatacca ggaatattgt accagtaaat 720 attacatcta gacagattaa agacgtaaga gctcagatga atgaagacat agtaatatca 780 aaaacctcgt tatggaaaga aatgcaatat aatagagata taatcattag atttaaattt 840 gctaattcaa taatcaaatc aggtggacta ggttataagt ggtcggaaat atcatttaag 900 cccatgaact atcaatatac gtatacgaga gatgaagaag aagtaacagc acatacaaca 960 tgttcagtga atggtgtcaa tgattttaat tataatggag gtacgttgcc tactgatttt 1020 gcaatatcga gatttgaggt cataaaggaa aattcttatg tatatgtaga ttattgggat 1080 gattcacaag catttagaaa tatggtatat gtgaggtcgt tagctgcaaa tttgaatgat 1140 gtagtatgca gtggaggttc ttacagtttt gcgttacctg taggcaatca tccggtgatg 1200 agtggtggtg cagtgacctt aacatctgct ggcgtaacac tatcaaccca gtatacagat 1260 tatgtatcat taaattcatt gcaattcaga ttcagattgg cggtgagcga accatcattt 1320 tccatctcgc gaactagaat gagtggcata tatggattac cagctgtaaa tccaaataat 1380 agcgcagaat attatgagat agctggtaga ttctcactca tatcactagt accaacaaat 1440 gatgactatc aaacgccaat cgctaattca gttaccgtaa gacaagattt agagagacaa 1500 ttaggcgagt taagagaaga atttaattcg ttgtcacaag aaatagctgt ttcccaactt 1560 atagatctag caacattacc gcttgatatg ttctcaatgt tctctggaat aaaatcaacg 1620 gtagaggcag taaaatctat gactacgaat gtgatgaaaa gatttaaaac atcaagttta 1680 gcaaacgcca tatctgattt aacaagtaat atgtcggaag cggcatcatc tgtaagattg 1740 acgtcagtga gatcggtggg cactattaca ttgccaagag ctagggtttc attgcaagtg 1800 ggcgatgact tgaggtccat gcaagacgta tcaacacaag tgtcaaatgt gagtagaaat 1860 ttaagattga aagagttcac gacgcaaact gatactttaa gctttgatga catctctgca 1920 gctgtattga agacgaaact agataaatcg acgcaaattt cacaacaaac aatgccagat 1980 attatagctg agtcatctga gaagtttata ccgaagagat cgtatagaat agttgatgag 2040 gatattcgat tcgaaactgg aattgacgga acgttttatg cttacaaagt cgatacattt 2100 aatgaaattc cgtttgatat ggaacgattt aataaattaa taacagattc accagtttta 2160 tcagcaataa tagactttaa gacgttaaag aacttaaacg acaattatgg aataacaaag 2220 aaacaagcca tggaactatt acattcaaat ccaaagacat taaaagagtt tataaataat 2280 aataatccaa taattagaaa tagaatcgaa aacttaatat cgcagtgtag gttgtagctg 2340 tctattttaa gatgtgacc 2359 //