ID D90198; SV 1; linear; genomic RNA; STD; VRL; 4423 BP. XX AC D90198; XX DT 15-OCT-1992 (Rel. 33, Created) DT 01-MAR-2008 (Rel. 95, Last updated, Version 9) XX DE Rice dwarf virus gene for RNA-dependent RNA polymerase, complete cds. XX KW . XX OS Rice dwarf virus OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Phytoreovirus. XX RN [1] RP 1-4423 RA Suzuki N., Tanimura M., Watanabe Y., Kusano T., Kitagawa Y., Suda N., RA Kudo H., Uyeda I., Shikata E.; RT ; RL Submitted (30-JUL-1990) to the INSDC. RL Contact:Nobuhiro Suzuki Akita Prefectural College of Agriculture, RL Biotechnology Institute; 2-2 Minami, Ohgatamura, Minamiakita-gun, Akita RL 010-0444, Japan XX RN [2] RX DOI; 10.1016/0042-6822(92)91210-L. RX PUBMED; 1529532. RA Suzuki N., Tanimura M., Watanabe Y., Kusano T., Kitagawa Y., Suda N., RA Kudo H., Uyeda I., Shikata E.; RT "Molecular analysis of rice dwarf phytoreovirus segment S1: interviral RT homology of the putative RNA-dependent RNA polymerase between plant- and RT animal-infecting reoviruses"; RL Virology 190(1):240-247(1992). XX DR MD5; 75df8a097a1ebbd0c3dbb1410cd6327e. XX FH Key Location/Qualifiers FH FT source 1..4423 FT /organism="Rice dwarf virus" FT /segment="1" FT /isolate="A" FT /mol_type="genomic RNA" FT /clone_lib="RD" FT /clone="p1RD" FT /note="synonym: Rice dwarf phytoreovirus" FT /db_xref="taxon:10991" FT misc_feature 1..6 FT /note="consensus sequence in rice dwarf virus" FT misc_feature 33..39 FT /note="consensus eukaryotic initiator context" FT CDS 36..4370 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q02119" FT /db_xref="InterPro:IPR007097" FT /db_xref="InterPro:IPR014383" FT /db_xref="UniProtKB/Swiss-Prot:Q02119" FT /protein_id="BAA14222.1" FT /translation="MDLARSDIIPHLLCLFQEIIQANIQKVSEAYDLELKIMNILTLWR FT NGSDNLISDNDDYMKKGLFFSRSNDPLALQARYAQMYDDLFKLNNYKVPDDVVRKHDTK FT ILDIILKESSVPFWYDISDDEAHESMLPEFRLQDIHEFRLNLKRVAVVPDESEEIQMDE FT SQSDKRRRKKRMEKSRPVWLSGSENDRRIELNDSLKPSQKFETKLSSYLLNRLMNEMNP FT HYCGHPLPALFVTLIMLKAYSLKNKFFSYGIRYMELVCNEIGGPDLNTRTFPVLFGSDG FT SFVGTRVYSHYPIKLRMILNDLTYLLTYSDLHKFQEFELDVNDEVLLHMLHSPNDGRQL FT KKAVTRLNLYYGLKFNPKTTDCGVVNGMDFTHKHPITKTADFTSPVLPMTNSFNKAEIC FT YGHSSKILNRAVFTDTVRGYIREDLKNVADLDLPKLHEHVSKLVDMRVNYTIIYDLMFL FT RVMLNLGGYSRSNQITDFRKTIDEITKMNEDFLSGADPEKNIDILNAWMAPTMEDCGYR FT LTKSILFGKFRKAKYPSDLEAKSNIDYYVTARSAGIGNLRISIETDKRKYKVRTTSKSA FT FVNAMGSGILDVNPVSNEPMMLTDYLLTQTPETRANLEAAIDSGSISDSELMRILGQNS FT IGSRSTTAWRPVRPIYINVLQAHLAQAFIIGPHINATVNQHESQPTSLWFTGDDLGVGF FT ATLYQNGTADIIAPAIEASSTGKALSVLADCSSWDQTFLTATIIPYYNGIKKALLEYQQ FT ADMRNFYMIDSSRTGVPGMKLSEIVDWFNSFQTKRIFNASYLKERHSFVVKYMWSGRLD FT TFFMNSVQNALITRRIAEEVSLKVSNTGLSWFQVAGDDAIMVYDGSSISTTEQVTRVNE FT ITVRNYEESNHIINPQKTVISHISGEYAKIYYYAGMHFRDPSIQLHESEKDSGASDVTE FT SLRGFGQVIYEYNKRAIGTLRVNALYGRLIAGLAYSVNVRRYDASKRTYANMKYYPPPT FT SVIAPAAFKGGLGLSFTGLSLNEVLFIKMHLHEAVSQGLHVISMISFEANEVVSNSLSA FT YYLKDQKDLLRDMKLGKHLEKVKGISFKSSDLAFSGSDFSQGLNLKRESIDKVKLEVSR FT KSIRDLRSSGISVPSTHAYENLPYASLHQSFKSLKVDRDTSKFTNERLLVSLLEYKSDI FT PRVSVTSQYPVYDLINISKVDELNVRSGGPVRFISTPIEGKLLEENIGTRQGVQFKNRG FT YGGSQEVLHFIRSNGLVITEQALIDLIIKSGVLLMINPQRGLIDLFQSLSGDTASSMHL FT ANFFMAEKPHWEDNAISLTIAGSLLENCDSRIENVKNFVSVLATGMQKDLQRMFYYVGF FT VYYAQRLIWSGGHSSKIFVSIDEDKLADFLRGSKPITRRRKAMAGTKREPINLSANFSY FT EISEPDREISEYDPLVLCHPLSMPFFGNWQEKYSVMQSDEQM" FT misc_feature 4420..4423 FT /note="consensus sequence in rice dwarf virus" XX SQ Sequence 4423 BP; 1326 A; 854 C; 986 G; 1257 T; 0 other; ggcaaatgat cggctgtgcc tggacttgat tcgtcatgga tcttgcgagg tcggatatca 60 ttccgcattt gctatgcctc ttccaagaga taatccaagc caacatccaa aaagtatctg 120 aggcgtacga tttggagttg aaaataatga acattttgac gttgtggcga aacggatctg 180 acaatctgat ttcagacaac gatgattaca tgaagaaggg actattcttc agtcggagta 240 atgatccctt agctttacag gctcgttatg cccaaatgta tgatgatctg tttaagctaa 300 acaactataa agtgccagat gatgttgtgc gcaagcatga caccaagatc ttggacataa 360 tattaaaaga gtcttccgtg ccattttggt atgacatatc ggatgacgaa gctcatgaat 420 cgatgctgcc tgaattcaga ctgcaagaca ttcatgagtt cagattgaac ttgaagcgcg 480 tagctgtagt acctgacgag tctgaagaga ttcagatgga tgaaagtcag agtgataagc 540 ggcgtcgcaa gaagaggatg gagaagagtc gccctgtgtg gttgtcggga tcggaaaacg 600 acaggcgcat agagctaaac gactctttga aacctagtca aaaatttgaa actaagttat 660 cgtcttatct attaaataga ttgatgaatg agatgaatcc tcattattgt gggcatccgt 720 taccagcatt atttgttaca ctcataatgc taaaggctta ttcccttaag aacaagttct 780 tttcgtatgg tataagatac atggagctcg tttgtaatga gatcggcggt ccagatctca 840 atacccgaac gttcccagtt ttatttggaa gtgacggttc attcgtgggc acacgagtat 900 actcgcacta tccaataaaa ctacgtatga tactgaatga cttaacttat ctattaacct 960 actcagacct tcataagttc caagagttcg agctagatgt aaacgatgaa gttttacttc 1020 acatgttgca cagcccgaat gatggaaggc aactcaagaa ggcggtgaca aggttaaatc 1080 tctattatgg attgaagttc aacccgaaga ccactgactg cggtgtggtt aatggaatgg 1140 atttcacgca caagcaccca atcactaaga ctgctgattt tacgtctcca gttttaccca 1200 tgactaattc ttttaataag gctgaaatat gttatgggca tagtagtaaa attttgaata 1260 gggctgtgtt tactgacact gtccgtggct atattcgtga agatcttaag aatgtggccg 1320 acttagattt gccaaaatta catgagcatg tttctaaatt ggtagatatg cgtgttaatt 1380 acacaattat ctatgatctc atgtttctac gagtcatgtt gaaccttggt ggctattcga 1440 ggtccaatca aatcactgac tttaggaaga ctattgatga gatcacaaaa atgaatgagg 1500 atttcttatc tggggcggat ccagaaaaga atattgacat attgaatgct tggatggcac 1560 ctacaatgga ggattgtggt tatcgactta ctaagtctat cttgtttggt aaatttagaa 1620 aagccaaata cccatctgat ttggaggcta aatccaatat tgattattac gtaactgcta 1680 gatcggctgg gattggcaac ctacgtatat caatagaaac agataaaaga aagtacaaag 1740 tacggactac gtcaaagtcc gcctttgtta acgccatggg ttctggaata cttgacgtta 1800 atcccgtcag taatgaacct atgatgttaa ccgattactt gttaacgcaa actcccgaaa 1860 cgcgagcaaa cttagaggcg gctatagata gcggatctat atccgactct gagttaatgc 1920 gcatattagg gcagaacagc atcggctcac gttctaccac agcttggaga ccggtacgac 1980 cgatttacat aaatgtgtta caagcacatt tggcgcaggc cttcatcatc gggcctcaca 2040 taaatgcaac tgtcaatcag catgaatccc aacctacatc cctttggttc actggggatg 2100 atttgggggt tggtttcgct acactgtatc aaaacggaac cgcggatata atcgctccag 2160 ctatcgaagc gtcatctact ggtaaagcgc tcagtgttct cgctgattgc tcatcctggg 2220 atcagacgtt tctaacagcg acgattattc cgtactacaa tggaataaaa aaagctttgc 2280 tagaatatca acaagcggat atgcgcaact tctatatgat agatagtagc agaactggcg 2340 tgccagggat gaaactgtct gaaatagtag attggtttaa cagttttcaa accaagcgga 2400 tattcaatgc ctcctatttg aaagaaaggc attcatttgt ggttaaatat atgtggtcgg 2460 gacgactgga cactttcttt atgaattctg ttcagaatgc attgatcacg aggagaatag 2520 ctgaagaagt atccttgaag gtgtcaaaca ctggtttgtc ctggtttcag gttgctggcg 2580 atgacgcaat catggtatat gatggatcat caatctccac aactgagcaa gtgaccagag 2640 ttaatgaaat cacagttcgt aattatgagg agtcgaatca cataattaat ccgcaaaaaa 2700 cagtgatttc acatatttct ggtgaatatg ctaaaatata ttattatgca ggaatgcatt 2760 ttcgcgatcc ttcaattcag ctgcatgaat ccgaaaagga ttctggagca agtgacgtca 2820 ccgagtctct acgggggttc ggtcaggtca tatatgaata taacaaaaga gcgattggta 2880 ccctacgcgt gaacgcttta tatggcaggc taatagccgg gctagcgtat agtgtaaacg 2940 tccgcaggta tgacgcttca aaaagaacat atgcgaatat gaaatactat ccgccaccaa 3000 cctcagtaat tgctccagcc gcatttaagg gaggattggg attgtcattt actgggttat 3060 cgctgaatga ggtgctattt attaaaatgc atctccacga ggcggtatct cagggtcttc 3120 acgtgatttc aatgatttca tttgaagcca acgaagtcgt ttcgaactct ctgtccgcgt 3180 attatcttaa ggaccagaaa gatttactgc gtgacatgaa gttaggcaag catcttgaaa 3240 aagtcaaagg tatatccttt aagtcctctg atttagcctt ttcgggtagt gatttctcgc 3300 aagggctgaa cctaaagagg gaatctattg ataaagtgaa gctcgaagtg tctcgtaaat 3360 ctatccgtga tttgcgctct tcgggtatta gtgtgccatc aacgcatgca tatgaaaatt 3420 tgccatatgc atcattgcat cagtctttca aaagtctaaa agtggataga gacacttcaa 3480 aatttacgaa tgaacggtta ctggtttcac tcctcgagta taaatcagac attccgagag 3540 taagtgtcac ctcgcagtat ccagtttatg acttgatcaa catctcaaaa gttgatgagt 3600 taaatgtcag atctggtgga ccagtcaggt tcatctctac tccaatagaa ggcaaactat 3660 tggaagaaaa tattggtacc cgtcaagggg ttcagtttaa aaatcgaggg tacggaggat 3720 ctcaggaagt attacacttc ataagatcta acggcttggt gataactgaa caagctctga 3780 ttgacttaat catcaagtca ggagtactgt taatgataaa tccacaacgt gggttgatcg 3840 acctttttca gtctctttct ggagataccg cttcatctat gcatctagcg aacttcttca 3900 tggctgaaaa accgcactgg gaagataacg ccatatctct caccattgcg ggatcgttgc 3960 ttgagaactg cgatagtaga attgagaacg taaagaattt tgttagtgtc cttgctactg 4020 gcatgcaaaa agacctacaa agaatgttct attacgtcgg atttgtctac tatgcacaga 4080 gacttatatg gtctggtggc cactccagta aaatattcgt ctctattgat gaggataagc 4140 tcgctgactt ccttagagga tctaaaccaa tcactcggag gaggaaagcc atggctggaa 4200 ctaagcgtga accgatcaat ttaagcgcta atttcagtta tgaaatatct gaaccggata 4260 gggagattag tgagtacgac ccgctagtct tatgtcatcc cctatcaatg ccattttttg 4320 gtaattggca ggagaaatac tctgtgatgc agagcgacga gcaaatgtga ttgatccgcc 4380 aggctatccg ttgggatagg ttaatcagcc gatcatatat gat 4423 //