ID D88448; SV 2; linear; genomic RNA; STD; VRL; 7241 BP. XX AC D88448; XX DT 08-MAY-2001 (Rel. 67, Created) DT 11-MAR-2011 (Rel. 108, Last updated, Version 3) XX DE Grapevine berry inner necrosis virus genomic RNA, nearly complete genome. XX KW . XX OS Grapevine berry inner necrosis virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus. XX RN [1] RP 1-7241 RA Yoshikawa N.; RT ; RL Submitted (18-OCT-1996) to the INSDC. RL Contact:Nobuyuki Yoshikawa Iwate University, Faculty of Agriculture; Ueda RL 3-18-8, Morioka, Iwate 020-8550, Japan XX RN [2] RX DOI; 10.1007/s007050050165. RX PUBMED; 9267448. RA Yoshikawa N., Iida H., Goto S., Magome H., Takahashi T., Terai Y.; RT "Grapevine berry inner necrosis, a new trichovirus: comparative studies RT with several known trichoviruses"; RL Arch. Virol. 142(7):1351-1363(1997). XX DR MD5; bc428da523901281a875766ba5bf9c1d. XX FH Key Location/Qualifiers FH FT source 1..7241 FT /organism="Grapevine berry inner necrosis virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:81877" FT CDS 103..5706 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA polymerase" FT /db_xref="GOA:Q91QY4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q91QY4" FT /protein_id="BAB47271.2" FT /translation="MTFFYRTPTEELISKFTSDEQARIYSPAQRLIENIEVNVSSLFFN FT YHLSETQKKFFFLNGIDLSPFSFRPHSHPACKTLENYFLFSFLPSFISHSGIKELFLFS FT IKKAKVARLRNLSDNVQLNLLNRLVEVKDKMRYGMDVSPERIAKKNVGLDIFLHDELHH FT WSKAQLISFLEVHRPRNLLATFVFPVEILGGFKSSVSNFLYEFECKNNRLHFYPDGVMQ FT EAYIQTLESSYLFKTNLIKTSRGNYSVSLHRSIGAHHFFQISRYESELLQTHRSFGPYD FT VLDVGSLFKGKVRVPIEGIGLARFKKILIYLLSLKKPDVNSAIAKLRQLSGDDVSLNEM FT WVIRDLADRIANGISKWSSCGIRSIIRDWMVDLCPFKKNFEKYNLIDDFDRHLMQVKPL FT SFTFNCSDEIDYSFEPEEDLPEFIDDFWTGASVKMQKDPLIDQILLGRSSSLNSFEPSS FT FTEAMICIFQLDGDFQDWKSRPKKVILRGQSSIYTVLTDDIFDFPQSLPAPEGFFPGIN FT EEDVAFFPFLSGELEIDDYAIRMSVLNSLKGRFALYRAGAFEPALFANGVSSFSSDFGH FT TAISEVKSNVEVPPKEAEIVCHVSPHIEAASSSVPLSLMSKEVCEYRDTSSSEESGASP FT VDVGSMENLPAHSNCHIAVDPIKIEPEEESSAFKVFSDEPYWSYGSTSLKVDFESAVKN FT SIFKRLKGRIAFFYHTNGLPYYHDRVLYRTNPVESWLSNILESANKHFKIEFNSCLLQI FT YEENGSIPWHFDNEDCYEQSAILTLNFSGTCLFEIQNLTSRKLEDGDFLLMKSGLQSLH FT RRRVSMASKGRISLTLRVQNRSPNFSLGLRFLPEIGCFLRAVSDQVLIDVEDLAIKLEG FT LFSEMLANNGVKVSDVGKYAKKLGINLTLRNGFEVMRFENNGPDVCMSFAMNHYRSISQ FT GEAKKGKGIESLPKELARKTSDEAPFDCNEQIISNLNRIYGNFLNSKVFQLNPNRAQKL FT LKSLLQGSTGIHCSSKLKDGWKIIPNAKTEEFVWKNYIESSDSWKGSMNWNAKINVTGI FT FGFAGSGKSHGLQTLLNEKFANSDEIILISPRLLLLEDWKAKVKGLKALTFESALKGCL FT SNFKWIILDEVTLFPNGYLDLLMLKMSHYNNIKSRHITLVGDPLQANYYSEKDCNLLGN FT VRMIDSVFPDVRYIYQSFRIPQNVANRFGVYDKNSHLPYDNHGTFYCDMSSARKHASSF FT GAKIEIVLVASELEKKYFSEQVRCITYGESQGLTFDFGLISLSEESRLCSDNHIYVALT FT RFKKGFGFFQNFRGDLKSYKSNLGSKLLGRYINLSDSLKPFMERMLDINLTFLDDRDNV FT GSGNNIEEKTAGDPWLKGLLDLQQTEEFEECSLQEVISLESTGKVHLPLASLNDEFESI FT RSRESREFKCLNFDWSMQFEDCGVKLKRSLNGNFSENFSAIYPVHQACDELTFLAAVKK FT RLRFSNPAKNLQKFKGATTAGKVLLDRFLKFIPIPKEKFPMLLDEAKREFQEVKLKKSE FT GTIAGNSNRSDPDWSWDKIFLFMKSQQCTKFEKRFVDAKAGQTLACFSHEILCHFSPWC FT RYMEKVFSMFCPKNFYIHQRKDFDKLAEFSRKYCRGGFCIESDYEAFDVSQDHNVLAFE FT VQLMEHMLIPEGIINDYIKMKTELGCKLGNFAIMRFTGEFCTFLFNTFCNMAFTFLRYE FT MQGNEPVCFAGDDMCALADLKESKEFDSFFRSFTLKAKVCRTLNPLFCGWRLTRFGLFK FT EPVLIFERLKIAMEKDKLDLVIESYFLEFCYAYKLGSWLEWVLDEKQADYQQRLSRFFV FT KKKHLLKGKAAELITHCDYLSDGSDEEDRSCFWEDCKRGYSNCESTLKFYLQ" FT CDS 5612..6664 FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="GOA:Q91QY3" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q91QY3" FT /protein_id="BAB47272.1" FT /translation="MALMKKIARVSGKIANGGTPIANLPSSFIYNDVKSLKGSAGILLE FT RNEIVYQVEPSSISDEFRVTTIPIVPMEQLKLLNGSNMNYIHFGALSISIDPLFKRNSG FT VKGKAFVYDSRWNNAEQALLQAFSFDLNSGTASLICSPNYSVQLTDPRLSTCLSTVLVF FT ENLNFREGSFAISVRIGVMYRPYNSYIGDSLELDQTNFKIDGKDVLELGLKDFGLNPDD FT NLDELFKKVPTDSSRIVKSFTENYRRKGFLGTSLKVPMNKFQIGPLNFEESREVKIGKN FT SGSNNRDKEKIDSFKSKSDKYENIAEVDKYLKRDHNFGRHVDQTGIEGSRQGGTDQKVV FT GGQAGPSWAK" FT CDS 6573..7160 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q91QY2" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:Q91QY2" FT /protein_id="BAB47273.1" FT /translation="MSIRQELRDLVRVELIKKLSEDKQALHGLNESNQSTVLDHIFGNI FT AIEGTSEETVYPQSLTKCHEGFDPTMPVIKEYSLSNVVNKIRIYKESHKNEDIKSMTLR FT QICASFAIDAKLGLQKFGRYGVHSNMFKKHPSICEKAPEMAFDFNDGLNFNLLTKQQKK FT VIQNLNQLLFRVESEKQKTNAITSSSEGAFTM" XX SQ Sequence 7241 BP; 2196 A; 1293 C; 1500 G; 2251 T; 1 other; gataagtagt gatcagagat ctatcgatcc cgtgtagtgc ttcaaaacac gtaagatttg 60 aactagcaac tcaaatcgtg attttataat cttttccgta aaatgacgtt cttttacaga 120 accccaacgg aggaactaat ctccaagttt acttcagatg agcaggcaag aatttattcc 180 cctgctcaaa gattaattga aaacatagaa gtcaatgtat cctcactttt ctttaattac 240 catctcagtg aaacccaaaa gaaatttttc tttttaaatg gaatagattt atctcctttc 300 tcttttagac cccatagtca tcctgcttgt aaaactttag aaaattattt cctcttttcc 360 tttctacctt ctttcatttc tcattccggg atcaaagaat tatttctttt ttccatcaaa 420 aaggcaaaag ttgcaagact ccgtaacctc tctgataatg tccaattgaa tctattgaat 480 agattagtgg aggttaagga caaaatgagg tatggaatgg atgtatctcc tgagagaata 540 gcgaagaaaa acgtgggtct tgatattttc cttcatgatg agcttcacca ttggtctaag 600 gctcaattga tttctttctt ggaagttcat cgtccaagaa atcttctggc tacatttgta 660 ttcccagttg aaattcttgg aggtttcaag tcttcagtct cgaattttct atatgagttc 720 gagtgtaaaa ataatcgcct ccatttttat cctgatggtg tcatgcagga agcttacatt 780 cagacccttg aatcttccta tcttttcaaa acaaacttga ttaagacttc caggggcaat 840 tattcagtta gtcttcatcg ttcaataggg gcccatcact ttttccaaat tagcagatac 900 gaatctgaac tcctccaaac gcatcgttca tttggacctt acgatgtttt ggatgtcggt 960 tcccttttta aagggaaggt tcgagttcca atcgaaggca ttggtttggc tagattcaag 1020 aagatattaa tttatctttt atctcttaaa aaaccagatg ttaactctgc aatagccaaa 1080 ctaaggcaac tctctgggga tgatgtttca ttgaatgaga tgtgggtgat ccgagatctg 1140 gctgatcgga ttgccaatgg aatttcaaaa tggtcttcat gtggcatacg ttctataatt 1200 cgtgattgga tggttgacct gtgtcctttc aagaaaaatt ttgaaaaata taatttgatt 1260 gatgattttg atcgtcattt gatgcaggtg aagccattgt ctttcacttt caattgttca 1320 gatgaaattg actattcatt tgaaccagaa gaagatctcc cagagttcat tgatgatttt 1380 tggactggag cctccgttaa aatgcaaaag gatccattga ttgatcaaat tcttttaggg 1440 agatcaagct ctcttaactc atttgaacca agttcattca cagaagctat gatctgcata 1500 tttcagttag atggagattt ccaggattgg aaatcaagac ccaagaaagt cattttacgt 1560 ggtcaaagtt ccatttacac agtcctcaca gatgacattt ttgacttccc gcaatctttg 1620 ccggccccag agggtttttt ccctggaata aatgaagaag atgttgcatt ttttcctttt 1680 ctatctggcg aattggaaat tgatgattat gcaattagaa tgtcagtttt gaattccctc 1740 aaagggagat ttgcattgta cagggctgga gcttttgaac cggctctatt cgccaatggt 1800 gtatcatctt tttcatcaga ctttggccac actgcaatct ctgaggtcaa atcgaacgtc 1860 gaagttccac caaaagaggc tgagattgta tgtcatgtca gcccacacat tgaagctgca 1920 tcttcatctg tgcctttatc attgatgtca aaagaggttt gtgaatatag agatacatca 1980 tcatcagagg aatcaggagc ctctccagtg gatgttggat ccatggaaaa tttacctgct 2040 cattccaact gtcatattgc agttgaccca atcaaaattg aacctgaaga ggaatcaagc 2100 gccttcaaag tgttttcaga tgaaccctat tggtcatatg gctccacatc gctgaaagtg 2160 gattttgagt cagcagttaa aaattccata ttcaaaagac tcaaaggtcg tatagccttt 2220 ttctatcata caaatggact accatattat catgacagag ttctttatag gacaaatcca 2280 gttgagtcat ggttatcgaa tattcttgaa tccgcaaaca aacacttcaa aatcgaattc 2340 aattcgtgtt tgttgcaaat atatgaagaa aatggttcca tcccctggca tttcgataat 2400 gaggattgct atgagcaatc ggccatttta acgctcaatt tctccggaac rtgtttattt 2460 gaaatacaga acctgacttc aaggaaattg gaagatgggg atttcctgct tatgaaaagt 2520 ggtttgcaat cacttcatcg ccgcagagtc agcatggctt ctaagggtcg aatctccttg 2580 actcttcgtg tccaaaatcg ttcgccaaat ttttcattgg gtctcagatt cttaccagaa 2640 attggctgct ttctaagagc agtttcggat caagttctga ttgatgtcga agacttggct 2700 atcaagcttg agggtctatt ttctgaaatg ctggcaaata atggtgtcaa agtctccgat 2760 gttggtaaat atgcaaagaa acttggaatt aacctgacac taaggaatgg ttttgaagtg 2820 atgagatttg aaaacaacgg acctgatgtg tgcatgtcct ttgccatgaa tcattatcgt 2880 tcaatttcac aaggagaggc gaaaaagggc aaagggatag aatctctacc gaaagagttg 2940 gcaagaaaga cttcagatga agcacctttt gactgcaatg agcaaataat cagtaatttg 3000 aatagaattt atggaaactt cctgaattca aaggtgtttc agttaaatcc gaatagagct 3060 cagaagctat tgaagtcact actacagggt tcaactggaa tccattgtag ctccaaattg 3120 aaagatggtt ggaaaataat tccaaatgca aaaactgagg aatttgtctg gaaaaactac 3180 attgaaagct ctgattcctg gaaaggctcc atgaattgga atgcaaaaat caatgtcact 3240 ggaatttttg gctttgcagg ttcaggtaaa tcacatggac ttcaaactct cctgaatgaa 3300 aaatttgcca attctgatga aatcatcctc attagtccga gattgcttct tcttgaagat 3360 tggaaagcga aagttaaagg tctgaaagcc ctgacatttg aatcagccct taaaggttgt 3420 ttgagtaatt tcaaatggat tattctggat gaggtcacac tcttcccgaa tggttatctg 3480 gatctactga tgttgaaaat gtctcactac aataacatca aaagcagaca tatcacattg 3540 gtcggtgatc cacttcaggc aaattactat agtgaaaagg attgtaactt acttgggaat 3600 gtgaggatga ttgatagcgt atttccggat gtgagataca tttatcaatc ctttagaata 3660 ccgcaaaatg ttgcaaatcg cttcggagtt tatgacaaga actcgcattt gccatatgac 3720 aaccatggaa cattctattg tgacatgtca tctgcgagaa aacatgcgtc gagttttgga 3780 gcaaaaattg aaattgttct tgtggcctct gagcttgaaa agaaatactt ctcggagcag 3840 gtgagatgca taacctatgg tgaatctcaa ggtttgacat ttgacttcgg cttaatatcc 3900 ttgtcagagg aatcaagatt gtgttcagat aaccatattt atgtggcttt gacaagattt 3960 aaaaaaggtt tcggcttctt tcaaaatttt cgaggtgatc tcaagtcata caagtcaaat 4020 cttggttcga agttgctggg gaggtatatc aacctgagtg attctctcaa accattcatg 4080 gaaaggatgc ttgatatcaa tctaacattt cttgacgaca gggataatgt gggttctgga 4140 aataacattg aggagaaaac tgctggtgac ccatggctca aaggtctttt ggatctccaa 4200 cagacagagg aatttgaaga atgttctctt caggaggtga tttctttgga atccactgga 4260 aaggttcatt tacctttggc ttcgttaaat gatgaatttg agtcaatccg ctcaagggaa 4320 tcaagagaat tcaaatgcct taacttcgac tggagtatgc aattcgagga ttgtggtgtg 4380 aagttgaaga gaagcctcaa tggaaatttt tcagagaatt ttagtgccat ttacccagtt 4440 catcaagctt gtgatgaact gacatttctg gcagcggtca aaaagcgtct cagattctcg 4500 aatccagcaa aaaatttgca aaaattcaag ggtgcaacta ctgctgggaa ggtactatta 4560 gatagatttc tcaagttcat accgattccc aaggaaaaat tccccatgct acttgatgaa 4620 gctaagagag agtttcagga agttaaattg aagaaatcag aaggaacaat tgcaggtaat 4680 tccaatcgct ctgatcccga ttggagttgg gataaaatct tcctgttcat gaagtctcaa 4740 caatgcacca aattcgagaa aaggtttgtg gacgccaaag ccggtcaaac tttagcctgc 4800 ttttcccatg aaattctgtg tcatttctca ccttggtgca ggtatatgga gaaagtcttt 4860 tcaatgttct gtccgaaaaa tttttacata catcaaagga aagactttga caagctagca 4920 gaattttcaa ggaaatattg taggggaggt ttttgtatag aatcagatta tgaagctttt 4980 gatgtttctc aggatcataa cgttttggca tttgaagttc agttgatgga acatatgttg 5040 attccagaag ggataatcaa tgattacatc aaaatgaaaa ccgaattggg atgcaagctt 5100 gggaattttg ccattatgag attcaccggg gagttctgca cattcctctt taataccttc 5160 tgcaatatgg catttacctt tctgaggtat gaaatgcaag ggaatgaacc agtctgtttt 5220 gccggtgatg acatgtgtgc tttagctgac cttaaggaat caaaggagtt tgactcattc 5280 tttcggtcct tcactctgaa agcgaaagtc tgcagaacct taaatccact tttttgtggt 5340 tggcgcttaa ctcgtttcgg gttattcaaa gaaccggtgt tgatatttga gagactcaaa 5400 attgcaatgg aaaaggataa attggattta gtcattgaat cttatttcct ggaattctgc 5460 tatgcctaca agttaggttc atggcttgag tgggttcttg atgaaaagca agctgactat 5520 caacaaaggt tgtcaaggtt ctttgtaaag aagaagcatc tactcaaagg taaagccgcg 5580 gaattaatta ctcattgtga ttatttgtct gatggctctg atgaagaaga tcgctcgtgt 5640 ttctgggaag attgcaaacg ggggtactcc aattgcgaat ctaccctcaa gttttatcta 5700 caatgatgtc aagagtctga aagggtcagc aggaattttg ttggaaagga atgaaatcgt 5760 ttatcaagtc gaaccttctt ccatttccga tgaattccgt gttacgacca tcccaattgt 5820 tccaatggag caattgaagc tattgaatgg atccaatatg aattacattc attttggagc 5880 tctgtccatt tctatagatc cattattcaa gaggaactct ggtgtgaagg gtaaggcatt 5940 cgtgtatgat tcacgttgga acaatgcgga gcaggctctt ttacaagctt tctcctttga 6000 tttgaattca ggaacagcgt cattgatatg ctcgccaaat tattctgttc aactcacgga 6060 tcctaggctc tccacctgtc tatcaactgt tcttgtcttt gagaatctga atttccggga 6120 gggcagcttt gcgatttcag ttagaatagg tgtgatgtac agaccatata acagttatat 6180 aggcgactca ctggagttgg atcagaccaa tttcaagatt gatggtaaag atgttttaga 6240 gttgggtttg aaggattttg gcttgaatcc ggatgataac ttggatgaac tctttaaaaa 6300 agtccccaca gatagctcca gaattgtaaa gtctttcaca gagaattaca ggcggaaagg 6360 cttccttggg acatctttga aggtgccgat gaataaattt caaattggtc ccttgaactt 6420 tgaggaatct cgtgaggtta aaattggaaa gaattctgga tccaataatc gtgacaaaga 6480 aaagattgat tcatttaagt caaaatccga caaatatgaa aatattgctg aggttgacaa 6540 atatttgaaa agagatcaca actttgggag acatgtcgat cagacaggaa ttgagggatc 6600 tcgtcagggt ggaactgatc aaaaagttgt cggaggacaa gcaggccctt catgggctaa 6660 atgagagcaa tcaatcaacc gttctggatc atatatttgg caacatcgcc attgaaggga 6720 cttctgaaga aactgtttat ccacagtccc taacaaaatg ccatgaaggt tttgatccaa 6780 ctatgccggt aattaaagag tatagcctat ctaatgttgt gaataaaatt agaatttata 6840 aagaatcgca caaaaatgag gacatcaaat caatgactct ccgtcagatt tgtgcctcgt 6900 ttgctattga tgccaaactt ggactacaga agttcggcag atatggcgtg cattcaaata 6960 tgtttaagaa gcatcctagt atttgtgaaa aagctccaga gatggcattc gatttcaatg 7020 atggtttgaa tttcaacctt ctgactaaac agcagaagaa ggttattcag aacctaaatc 7080 aacttctttt tcgcgttgaa agtgaaaaac agaagacgaa tgcaattact tcatcgagcg 7140 agggtgcttt tactatgtaa tgtgtgttta catttaataa taaagtctca tatgagcacg 7200 tagctactta atgtgatcgt aatttgtttt aattaatttt c 7241 //