ID D86320; SV 1; linear; genomic RNA; STD; VRL; 2426 BP. XX AC D86320; XX DT 26-JUL-1996 (Rel. 48, Created) DT 05-DEC-2006 (Rel. 90, Last updated, Version 6) XX DE Soil-borne wheat mosaic virus genomic RNA (RNA 2) for readthrough protein, DE capsid protein and cystein-rich protein, complete cds. XX KW . XX OS Soil-borne wheat mosaic virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-2426 RA Shirako Y.; RT ; RL Submitted (28-JUN-1996) to the INSDC. RL Yukio Shirako, University of Tokyo, Asian Center for Environmental RL Sciences; 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113, Japan RL (E-mail:shirako@ims.u-tokyo.ac.jp, Tel:81-3-3812-2111, Fax:81-3-5800-5192) XX RN [2] RX PUBMED; 9445077. RA Shirako Y.; RT "Non-AUG translation initiation in a plant RNA virus: a forty-amino-acid RT extension is added to the N terminus of the soil-borne wheat mosaic virus RT capsid protein"; RL J. Virol. 72(2):1677-1682(1998). XX DR MD5; 1c26bb08bf15f005ae04e35cff5d1bdb. DR EuropePMC; PMC124655; 9445077. DR RFAM; RF01080; UPD-PKib. DR RFAM; RF01104; SBWMV2_UPD-PKb. DR RFAM; RF01105; SBWMV2_UPD-PKl. DR RFAM; RF01111; SBWMV2_UPD-PKk. XX FH Key Location/Qualifiers FH FT source 1..2426 FT /organism="Soil-borne wheat mosaic virus" FT /segment="2" FT /strain="Nebraska" FT /isolate="US Lab1" FT /mol_type="genomic RNA" FT /db_xref="taxon:28375" FT CDS 333..1364 FT /codon_start=1 FT /transl_except=(pos:861..863,aa:OTHER) FT /product="39-kDa readthrough protein" FT /note="opal suppression" FT /db_xref="GOA:Q88464" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q88464" FT /protein_id="BAA13064.1" FT /translation="MAVNKSYTGYNKELNAMAATHAYIRLSTLMSQIESWQATRASVLT FT HLGVMLNGVSKLGERSFFSRTKRFGAHTSDGDEIFCDLGGEAVTQILSRLTVALQSARG FT EGAQTRKAKRGAAPGTSQVENEEQGQTDQTLAISNAVAELMIFVRTKDFTMNECYTQDS FT FEAKYNLKWEGSSXLIIRNEPEVVYSELEDKLLSFESSVYHPKAVTVEFEVPVATGTTT FT TDDEIITEDVEMVIVTEVLVDDESDYYWLYFVLLLTSFLITCFILLSRRFIHFLGNRGG FT PGAPLCRRFATRLWSIRLWLLRKATRRYGNLGVVRKTHSQTTMRKYLRDYNFQLEEWET FT AIA" FT CDS 333..863 FT /codon_start=1 FT /product="19-kDa capsid protein" FT /db_xref="GOA:Q88463" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q88463" FT /protein_id="BAA13065.1" FT /translation="MAVNKSYTGYNKELNAMAATHAYIRLSTLMSQIESWQATRASVLT FT HLGVMLNGVSKLGERSFFSRTKRFGAHTSDGDEIFCDLGGEAVTQILSRLTVALQSARG FT EGAQTRKAKRGAAPGTSQVENEEQGQTDQTLAISNAVAELMIFVRTKDFTMNECYTQDS FT FEAKYNLKWEGSS" FT CDS 1498..2022 FT /codon_start=1 FT /product="19-kDa cystein-rich protein" FT /db_xref="InterPro:IPR007609" FT /db_xref="InterPro:IPR016567" FT /db_xref="UniProtKB/TrEMBL:Q88465" FT /protein_id="BAA13066.1" FT /translation="MSTVGFHTCASCVDGPKSIKCVSKYRISVYKTLGLDVVKCRLPAD FT CGVNCGMPAAFVLEQGHPKLTMDGYCGEKHRGYVLSGAWRHAQLRSLNAELDTLEAREE FT SLRAQIKALSAGDHCPAVLAYVPKKLTKLKAEVYDVTGKKQVCITGLVDVMDSALVRLA FT PDSPPKKISSL" XX SQ Sequence 2426 BP; 635 A; 469 C; 594 G; 728 T; 0 other; gtatttcttc ttcacatacg acaagtgtta acttgttccg tgagatttta ccattcttcc 60 ctgagtgaga attaaaataa actttggatt gctacttgga tgaaacttgg agtttcactt 120 gtctctcgtt accataggca cgcttaacgc gataaatcct aggtaatcag cggggaggaa 180 actagtcgtc tctttcaagt ggtatcggtg cgctggataa gtttgctaga ctcaaagacc 240 aggtggacct gtcgctgcag aaagcagctg gtaaagtgac tgctgaatct accggaccat 300 tattgccaaa ggttactaca ccattgccag ttatggcggt aaataaaagt tacactggtt 360 acaacaaaga gcttaacgcg atggctgcga ctcacgctta cataagactc agcactttga 420 tgagtcagat tgaaagttgg caggctacga gggcgagtgt acttacgcat ttaggtgtta 480 tgcttaatgg cgtgagtaaa ttaggtgaac gaagtttctt ctctaggact aaacgctttg 540 gagcgcatac ttcagacggt gacgagattt tctgcgatct aggaggagaa gcggttacgc 600 aaatcctttc taggttgaca gttgctcttc aatccgctag aggtgaaggt gctcagacga 660 ggaaggctaa gaggggagct gcacctggca ctagtcaagt agagaatgaa gaacagggtc 720 agaccgatca gactcttgct atttctaatg cagttgctga gttaatgatc tttgtgcgta 780 cgaaagattt tactatgaat gaatgctata ctcaagactc ttttgaggct aagtataact 840 tgaaatggga aggttcgagt tgacttatca ttcgtaacga accagaggta gtctattcgg 900 agctagaaga taagttactg agcttcgaaa gttctgtcta tcatcccaaa gcggttactg 960 tcgagtttga agttcctgtt gctacaggga ctacgactac tgatgatgag atcattactg 1020 aagatgtgga gatggtaata gtcactgagg tgctcgtcga cgacgaatct gattactatt 1080 ggctgtactt cgtactgctg ctcacatctt ttctcataac gtgtttcatt ctcctttcga 1140 ggagattcat tcatttcctt ggcaaccgag ggggtcctgg tgcaccattg tgtagacgct 1200 ttgctacaag actttggtcc attaggttgt ggttgttaag gaaagcgacc aggcgctatg 1260 gcaatttagg cgtcgtgcga aagactcact ctcaaaccac aatgcgtaaa tatttgaggg 1320 attacaactt tcaacttgaa gagtgggaaa cagctattgc ctagggtgag tggtaaaagt 1380 ggtgttggta gtatgaagat gaaaatcgct agtaagccta tggcgtccta acgtgttgtt 1440 tttaatacta cttcaccaat cacacactac tttctgggct acttgtttat ctccattatg 1500 tctactgttg gtttccacac ttgtgcgagt tgcgttgatg gacctaagtc tattaaatgt 1560 gttagtaagt atcgtattag cgtgtacaag actcttggtc ttgatgttgt taagtgtcgt 1620 cttcctgcag attgtggcgt taattgtggt atgcctgcgg cttttgtttt agaacagggt 1680 catcctaagc ttactatgga cggttactgt ggagagaaac acagaggtta tgttctatct 1740 ggtgcgtggc gtcatgccca actccgctct ctcaatgctg aattagatac cttggaggct 1800 agagaagagt ctcttcgagc tcagattaaa gctctcagcg ctggcgatca ttgtcccgct 1860 gttctcgcat acgtccccaa gaaactgact aagttgaaag cggaggttta cgatgttact 1920 ggaaagaagc aggtgtgcat tacgggttta gttgatgtaa tggattctgc gttggtgcgt 1980 ttggcacctg actcaccgcc aaagaagata tcctctttgt gatgttctat gttctcgtct 2040 tgttgttttc ttattgctag tttgtgtcta ctggagtagg taaccaggat aaagaacccg 2100 aacgaaaatc ttgcaaaaat atttattact aatataaata aatgggcaag tctgtcactt 2160 tggctatcag agttatcata ctctataaac tatgacgtgg tcttcacgat agaagatggt 2220 gcttgttatt tcacctaaat cgaaataacg aaagggcgtt ctacagtacg tttaaactgt 2280 aggttccaac ctctagttcc tattgatgta atcgaaaaaa gatcaatggg taattatgat 2340 gaggtgcgac tggtggtcgc ggctgctatc acacagcagc taggaggggt tcaattcccc 2400 ccccatccgg agggttatcc ggccca 2426 //