ID D86123; SV 1; linear; genomic RNA; STD; VRL; 4014 BP. XX AC D86123; XX DT 17-MAR-2000 (Rel. 63, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Japanese iris necrotic ring virus genomic RNA, complete genome. XX KW capsid protein (p38); movement protein (p12); movement protein (p8); KW readthrough protein (p85); readthrough protein (p99); replicase (p26). XX OS Japanese iris necrotic ring virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betacarmovirus. XX RN [1] RP 1-4014 RA Takemoto Y.; RT ; RL Submitted (20-JUN-1996) to the INSDC. RL Yutaka Takemoto, The University of Tokyo, Department of Agricultural and RL Environmental Biology; 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113, Japan RL (E-mail:aa57007@mail.ecc.u-tokyo.ac.jp, Tel:03-5841-5054, Fax:03-5841-5090) XX RN [2] RX DOI; 10.1007/s007050050054. RX PUBMED; 10795530. RA Takemoto Y., Kanehira T., Shinohara M., Yamashita S., Hibi T.; RT "The nucleotide sequence and genome organization of Japanese iris necrotic RT ring virus, a new species in the genus Carmovirus"; RL Arch. Virol. 145(3):651-657(2000). XX DR MD5; 844f681379bc4748e90896204fba9400. DR EuropePMC; PMC3113551; 21645857. XX CC Sequence updated (26-May-1999) XX FH Key Location/Qualifiers FH FT source 1..4014 FT /organism="Japanese iris necrotic ring virus" FT /lab_host="Iris ensata" FT /mol_type="genomic RNA" FT /db_xref="taxon:77344" FT CDS 32..2698 FT /codon_start=1 FT /transl_except=(pos:764..766,aa:OTHER) FT /transl_except=(pos:2318..2320,aa:OTHER) FT /product="readthrough protein (p99)" FT /note="ORF3" FT /db_xref="GOA:Q9IRA2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9IRA2" FT /protein_id="BAA92791.1" FT /translation="MLWYEELTMSLLGSRFVPKPLAIVGGLSLCVTVAVRETVQDGISM FT GLSSFGDYCRNKVQAGLNPLDVSHDFKQATPQHPSMDLMLDNPQLCEEPEDCLEVLVAN FT EQVTKKRVNRHARGTFAAHAAMACKLHFGLVPMNTRANLSVATRFITNYCQERHVVPTH FT TRAVVDAAIPLVFTPDSGEIGILVALNHRESQIRRLAAREATIQQTPLAELVTAPWCGA FT SWVRVARVLSGYEDFTTFHFSNXGGLREMGGVETQIVRGAHPSLTVSREKPASKVRRIY FT QITGLDSGINFGVHNNSLNNLRRGLIERVYYVESNGVLQPPLKPKVHQFRKLKYFARRL FT VNIVGPYTPIEREEYPLLYQGRRKAIYQKALESLSERPCTRKDAKLRTFVKAEKINFTS FT KGDPAPRVIQPRDPRYNIEVGKYLKKAEHHIYSAIDRIWGGPTVLKGYTVEQLGTNIAN FT IWSQFQRPCAVGFDAKRFDQHVSVDALRFEHSVYNSIFHSPELARLLSYQLHNVGVAVA FT SDGFARYSVDGCRMSGDINTALGNCLLSCAITHFLCRGIRCRLINNGDDCVLFFESSDL FT TLVNERLTKWSDFGFSVKFEEPVYELERVEFCQMQPIYAGGWVMCRNPYICTSKDTYSI FT TPWHNPKSALKWVASVGECGLSLCGGIPVLQSFYSCMMAQSDERMNIKNDVWFSDSGFA FT RLASNGKRTREHVSTEARISFWKAFGILPETQVSLEGVFHSYENCKAFGAGGINCELWT FT QLLKPQRMNXILQVKNYRLSSERYKMPGAVKRLRGLLRGMLRCLQFALWLVGKLLVGFG FT CRSARPSPQPTIFTSEPLWDNDLLLVLIISLTFTLIYIFAQQQPVHHHHYSESNHKTQH FT ITIGTESQTRQIPNGAT" FT CDS 32..2320 FT /codon_start=1 FT /transl_except=(pos:764..766,aa:OTHER) FT /product="readthrough protein (p85)" FT /note="ORF2" FT /note="putative replicase" FT /db_xref="GOA:Q9IRA1" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9IRA1" FT /protein_id="BAA92792.1" FT /translation="MLWYEELTMSLLGSRFVPKPLAIVGGLSLCVTVAVRETVQDGISM FT GLSSFGDYCRNKVQAGLNPLDVSHDFKQATPQHPSMDLMLDNPQLCEEPEDCLEVLVAN FT EQVTKKRVNRHARGTFAAHAAMACKLHFGLVPMNTRANLSVATRFITNYCQERHVVPTH FT TRAVVDAAIPLVFTPDSGEIGILVALNHRESQIRRLAAREATIQQTPLAELVTAPWCGA FT SWVRVARVLSGYEDFTTFHFSNXGGLREMGGVETQIVRGAHPSLTVSREKPASKVRRIY FT QITGLDSGINFGVHNNSLNNLRRGLIERVYYVESNGVLQPPLKPKVHQFRKLKYFARRL FT VNIVGPYTPIEREEYPLLYQGRRKAIYQKALESLSERPCTRKDAKLRTFVKAEKINFTS FT KGDPAPRVIQPRDPRYNIEVGKYLKKAEHHIYSAIDRIWGGPTVLKGYTVEQLGTNIAN FT IWSQFQRPCAVGFDAKRFDQHVSVDALRFEHSVYNSIFHSPELARLLSYQLHNVGVAVA FT SDGFARYSVDGCRMSGDINTALGNCLLSCAITHFLCRGIRCRLINNGDDCVLFFESSDL FT TLVNERLTKWSDFGFSVKFEEPVYELERVEFCQMQPIYAGGWVMCRNPYICTSKDTYSI FT TPWHNPKSALKWVASVGECGLSLCGGIPVLQSFYSCMMAQSDERMNIKNDVWFSDSGFA FT RLASNGKRTREHVSTEARISFWKAFGILPETQVSLEGVFHSYENCKAFGAGGINCELWT FT QLLKPQRMN" FT CDS 32..766 FT /codon_start=1 FT /product="replicase (p26)" FT /note="ORF1" FT /note="putative" FT /db_xref="UniProtKB/TrEMBL:Q9IRA0" FT /protein_id="BAA92793.1" FT /translation="MLWYEELTMSLLGSRFVPKPLAIVGGLSLCVTVAVRETVQDGISM FT GLSSFGDYCRNKVQAGLNPLDVSHDFKQATPQHPSMDLMLDNPQLCEEPEDCLEVLVAN FT EQVTKKRVNRHARGTFAAHAAMACKLHFGLVPMNTRANLSVATRFITNYCQERHVVPTH FT TRAVVDAAIPLVFTPDSGEIGILVALNHRESQIRRLAAREATIQQTPLAELVTAPWCGA FT SWVRVARVLSGYEDFTTFHFSN" FT CDS 2284..2514 FT /codon_start=1 FT /product="movement protein (p8)" FT /note="ORF4" FT /note="putative" FT /db_xref="GOA:Q9IR99" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q9IR99" FT /protein_id="BAA92794.1" FT /translation="MDSASETTTYELDPPGEELPTVKREIQNARGSQATKRAVARDAAL FT STVRSVASREVVGGVWVQVGETFTTTNHFHF" FT CDS 2366..2698 FT /codon_start=1 FT /product="movement protein (p12)" FT /note="ORF5" FT /note="putative" FT /db_xref="GOA:Q9IR98" FT /db_xref="InterPro:IPR009575" FT /db_xref="UniProtKB/TrEMBL:Q9IR98" FT /protein_id="BAA92795.1" FT /translation="MPGAVKRLRGLLRGMLRCLQFALWLVGKLLVGFGCRSARPSPQPT FT IFTSEPLWDNDLLLVLIISLTFTLIYIFAQQQPVHHHHYSESNHKTQHITIGTESQTRQ FT IPNGAT" FT CDS 2685..3743 FT /codon_start=1 FT /product="capsid protein (p38)" FT /note="ORF6" FT /db_xref="GOA:Q9IR97" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9IR97" FT /protein_id="BAA92796.1" FT /translation="MALRDEKKVAKLASDGVAWAVKLRSGGGWKTLTTTQKRMARQALG FT MTQVPIAQTGLRVNRVSQPISVSSRITTGEPRVTNVKRSMTVTFSEMIGVVRSHSSLST FT ESWVLNPSDIATFPQLSVSAAMYEKYRFTNLAFRFAPSCPTTTGGVVVLVHDPDSSDDL FT PSDPTMLYEYSGAMRTSAYSPARLIVPTDGAARFVGDNHTSDPKLINFGKLIVANYGQG FT ASDPDMLGEIFIEYTVVLIDRQPSALSTQTLSAESSTGPKLLSRLVEGTKSPYTLTYSF FT NCGGTFVVSLFYPIGPVSGPVSGSATIIRAYGDAQSQQAQVITVRSPCRGGDFTLGLNS FT PGDIPTAFVTRA" XX SQ Sequence 4014 BP; 990 A; 1008 C; 1061 G; 955 T; 0 other; gggtaaacga gtatatatac aacgtgaacc catgttgtgg tacgaggagt tgacgatgag 60 tctactaggg tcgaggtttg tgcctaagcc tctggcgatc gttggtgggc tgtctctctg 120 tgtgactgtc gctgtgcggg aaactgtgca agatggcatc tccatggggc tcagttcatt 180 tggcgattac tgtaggaaca aggtccaagc cggattaaac ccgctggacg tcagccacga 240 cttcaagcaa gcgacaccgc aacatcctag catggacctc atgctggaca atccccagtt 300 gtgcgaagaa ccggaggatt gccttgaggt cctggtggcg aacgagcaag tgaccaagaa 360 acgggtcaat cgccacgcta ggggaacatt cgccgcccac gccgctatgg cctgtaaact 420 gcacttcggg ttggttccaa tgaacacgcg ggccaacctc agcgtagcaa ccaggttcat 480 caccaactat tgccaggaga ggcacgtcgt gccaacccac acgcgggcag tagtggatgc 540 agccatccct ctcgtattca cccctgactc tggtgagatc ggcattcttg tcgcattaaa 600 ccatcgcgag agtcagatca ggaggttggc agcgcgtgag gcaacaattc agcaaacacc 660 cctggctgaa ttggtaaccg ctccttggtg tggggcgagt tgggtgaggg tggccagagt 720 tctcagtggg tatgaggact ttaccacctt ccatttctcc aactaggggg gtctccgcga 780 gatggggggg gtagaaacac agattgttcg aggcgcccac cccagtctca ccgtctcgcg 840 ggaaaagcca gcctccaagg ttcgcagaat ttaccaaatt actgggttgg atagtggcat 900 caattttggc gtgcacaaca atagtttgaa taacttgcgc cgaggtttaa ttgagcgtgt 960 ctactatgtc gaatccaatg gtgttttgca acctccgttg aagccaaagg tgcaccaatt 1020 ccgcaaactc aagtacttcg cccgtcgttt ggtaaacatt gttggaccgt ataccccgat 1080 cgagagggag gaataccctc tcttgtatca gggcaggcgt aaggcaatct accagaaggc 1140 gttagagtcc ctgagtgagc gaccatgcac aagaaaggac gccaaactcc ggacctttgt 1200 caaagccgag aagataaatt tcacctctaa gggtgaccca gcccccaggg taatccaacc 1260 cagggaccct cgatacaata tcgaggttgg gaagtaccta aagaaggctg aacatcacat 1320 atactccgct attgacagaa tatggggggg tcctactgta ctaaaggggt acacagtgga 1380 gcaactggga accaacattg ccaacatctg gtcccaattc cagagacctt gtgctgtagg 1440 ttttgatgcc aagagattcg atcagcacgt ctctgtagat gccctaagat ttgagcattc 1500 tgtttacaat tcgattttcc acagccctga gttggctaga ctacttagct accaactcca 1560 taacgtgggt gtggccgtgg cctctgatgg atttgccagg tattccgtgg atggatgtag 1620 aatgagcggt gacatcaaca cagcgttggg taattgcctg ctgagttgtg ccatcaccca 1680 cttcctgtgt aggggcataa ggtgtagact catcaacaac ggcgatgact gcgtcctctt 1740 cttcgaaagt tccgatttga ccctcgtcaa tgagcgtttg acgaaatggt ccgacttcgg 1800 gttttctgtc aagtttgagg aaccggtata cgagcttgaa cgtgttgagt tttgccaaat 1860 gcaaccaatt tacgcgggag gttgggtcat gtgccgtaac ccttacatat gcacttctaa 1920 ggacacctat agcatcacgc catggcacaa tcccaaaagc gcactcaaat gggtcgcttc 1980 agttggggag tgtggattat cactttgtgg gggcatacca gtgttgcaga gtttttacag 2040 ttgcatgatg gcgcagagtg atgagaggat gaatatcaaa aacgatgtgt ggttttcgga 2100 cagcgggttc gcaagattgg cctccaatgg caagcgcact agagagcatg tgagtaccga 2160 agccaggatt tccttctgga aagcttttgg tatccttcct gagacacagg tgtccctgga 2220 aggggtgttc cactcttatg aaaattgcaa agcatttggt gcggggggta taaactgcga 2280 actatggact cagcttctga aaccacaacg tatgaactag atcctccagg tgaagaatta 2340 ccgactgtca agcgagagat acaaaatgcc aggggcagtc aagcgactaa gagggctgtt 2400 gcgcgggatg ctgcgttgtc tacagttcgc tctgtggcta gtcgggaagt tgttggtggg 2460 gtttgggtgc aggtcggcga gaccttcacc acaaccaacc attttcactt ctgagcccct 2520 ctgggataac gaccttctcc ttgtgctaat aatctcactc accttcactc ttatatatat 2580 atttgctcaa caacaaccag tgcaccatca ccactactct gaaagcaatc ataagacaca 2640 gcacatcaca atcggcaccg aaagtcagac tcgacaaatt cccaatggcg ctacgtgatg 2700 aaaagaaagt tgcgaagcta gcctctgatg gagtagcctg ggctgtcaag ctcagatctg 2760 gtgggggttg gaaaaccctc accactaccc aaaagaggat ggctagacaa gcgctgggaa 2820 tgactcaagt gcccatagcc caaactgggt tgcgggtaaa tcgtgtgtcc cagccaatct 2880 ctgtgtcctc taggatcacg actggtgaac cccgtgtaac caacgttaaa cgcagtatga 2940 ctgtcacttt ttccgagatg attggtgtag taaggtcaca ctccagcttg tccacggagt 3000 cttgggtcct caacccaagt gacattgcta cgttccctca attatccgtt tctgctgcga 3060 tgtacgagaa gtacaggttc accaatctag ccttcagatt tgctccaagt tgccctacga 3120 ccacaggtgg agtagtagta ttagtccacg accctgattc gagcgacgac ctccctagcg 3180 accctaccat gttatatgag tattcaggag ctatgcgaac cagtgcttac agcccagctc 3240 gcctcattgt tccaactgac ggcgcagcca ggtttgtcgg cgacaatcac acaagtgacc 3300 cgaagctgat caacttcggg aagctcattg ttgccaatta tggacaagga gcatctgatc 3360 ctgatatgtt gggggagatc tttatcgagt atactgttgt gcttattgat cggcagccat 3420 ctgcattgag tacacagaca ttatcggctg aatcatcgac aggacctaag ctactctccc 3480 ggttggtcga gggaaccaag agcccctaca cccttacgta cagcttcaac tgtggtggta 3540 cctttgttgt cagtttgttc taccccatcg gaccagtttc cggaccagta tccgggtcag 3600 ctactattat ccgagcctat ggggacgcac agagccaaca ggcacaagtt atcaccgtta 3660 ggtcaccatg cagaggcgga gacttcaccc ttggactgaa tagtccaggt gacataccca 3720 ccgcctttgt cacccgtgct tagaaacgac cattcttggg tttgcagcga gatgccacgt 3780 gccagaggat agtaccactg gctgacccta ccagcgtttg cgagttggta tgcgtggatg 3840 taaattccaa gtcttgtgtc cgacctaggc tccgccggct ggagctcgca tgtggcagtg 3900 cgagcagagg atgtcccgat gcataaaatc ccgtgagggt gggcttgcta gggaggccga 3960 cactgcgtaa tgcaaaacta cccttttccc ctgtgagggg gaagaggggg gccc 4014 //