ID D85783; SV 1; linear; genomic RNA; STD; VRL; 5667 BP. XX AC D85783; XX DT 28-JUN-1996 (Rel. 48, Created) DT 20-FEB-2009 (Rel. 99, Last updated, Version 10) XX DE Barley yellow dwarf virus-PAV genomic RNA, complete genome. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5667 RA Sano Y.; RT ; RL Submitted (05-JUN-1996) to the INSDC. RL Contact:Yoshitaka Sano Graduate School of Science & Technology, Niigata RL University, Course of Biosystem Science; 2-8050 Ikarashi, Niigata, Niigata RL 950-21, Japan XX RN [2] RA Sano Y., Tanno F., Kato Y., Matsubara A., Kojima M.; RT "Complete nucleotide sequence of the Japanese isolate of barley yellow RT dwarf virus-PAV serotype"; RL Nippon Shokubutsu Byori Gakkaiho 62:566-571(1996). XX DR MD5; cadd52f68f893b0d2c62e9b3965f7d10. DR EuropePMC; PMC112095; 10846080. DR EuropePMC; PMC3784903; 24426276. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5667 FT /organism="Barley yellow dwarf virus PAV" FT /lab_host="Hordeum vulgare" FT /strain="BYDV PAV serotype" FT /isolate="BYDV JPN-PAV" FT /mol_type="genomic RNA" FT /dev_stage="seedling" FT /cell_type="sieve element" FT /tissue_type="phloem" FT /db_xref="taxon:2169986" FT misc_feature 1..5667 FT /note="complete genome including six major ORFs." XX SQ Sequence 5667 BP; 1671 A; 1370 C; 1388 G; 1238 T; 0 other; agtgaagatt gaccatctca caaaagctgt tacgtgcttg taacacacta cacactcgtt 60 ttgtgttcga gaagtagttg caacaacggt ccccttattg cctgacaagc tgagggccac 120 ccttctatcc ccgccgccat catgttcttc gaaatactta taggagctag cgctaaggcg 180 gtaaaagact tcatcagtca ttgttattct cgtttgaaat ctatatatta ctcttttaaa 240 cgatggctga tggagatatc tgggcagttt caggcccatg acgcctttgt caacttgtgc 300 ttcgggcaca tggctgacat tgaagacttc gaggcagagc tcgctgaaga gttcgccgag 360 agggaggacg aggtggaaga ggcaaggagc ctcttgaaac tgctggtcgc ccaaaaatct 420 aaaactgggg tgaccgaggc ttggaccgac ttctttacga agtcgagagg tggcgtctac 480 gcgccgcttt cctgcgagcc taccaggcag gagttagaag tcaagagcca aaagctcgaa 540 aaacttctag aagaacagca ccaattcgag gtgcgagcgg ctaagaaata catcagggaa 600 aagggccgcg gcttcatcaa ctgttggaac gacttgcgaa gtcgtctcag gctggtgaag 660 gacgtcaggg acgaggcgaa ggacaacgcc agagctgctg ccaagatcgg agcagaaatg 720 ttcgcacccg ttgacgtgca ggacctctac agtttcacag aggtcaagaa ggtggagacc 780 ggcctcatga aggaggtcgt gaaagagaga aacggcgaag aagagaaaca cctcgagccc 840 atcatggaag aggtgagatc tatcaaggat accgccgaag ccagggacgc cgcctccact 900 tggataacag agacagttaa gctgaagaac tcaacgctta acgcagatga attgtctctg 960 gccaccatcg ctcgctacgt tgaaaacgtg ggggacaaat tcaaactcga cattgctagc 1020 aagacgtatc taaagcaagt cgcatcgatg tctgtaccaa taccaactaa caaggacatc 1080 aaattgaaga tggtgctgca gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg 1140 cttgactctg tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattcc 1200 ccattctcgg gctgcctgag attgcggtca cagacggagc ccgactccgt aaggttagta 1260 gtaatattag ataccttagc caaacccacc taggtcttgt ctataaggca ccaaatgcct 1320 ctctgcacaa cgcgcttgta gcagtggaga gaagagtttt tacagtagga aagggggaca 1380 aagcaatcta ccccccccgc ccggagcatg acattttcac tgatacgatg gattacttcc 1440 agaaatccat tatagaagag gtgggatact gtaaaacata tccagcgcaa ctcctggcta 1500 atagctatag cgcaggaaag agggccatgt accacaaagc cattgcatcc ttgaaaactg 1560 tcccttatca tcagaaggat gccaacgtgc aagctttcct gaagaaggag aaacattgga 1620 tgaccaagga catcgccccc cgattgattt gcccccgcag taagcggtac aatattatcc 1680 taggaactcg tttgaaattc aacgagaaga agatcatgca cgccatcgat agtgtgtttg 1740 gatcccccac tgtgctttct ggttatgaca actttaaaca aggaagaatc atagccaaaa 1800 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc tttgaccaac 1860 atgtgtcaga gcaggcgctt aagtgggaac acgggatata caatggaatc ttcggagaca 1920 gcgaactggc ccttgcactt gaacatcaaa ttaccaacaa catcaagatg tttgttgaag 1980 ataaaatgct taggttcaag gtaagaggcc acagaatgtc cggtgacatt aataccagca 2040 tgggaaataa gctcataatg tgcggcatga tgcacgcata tttcaagaag ctgggtgttg 2100 aagctgaact atgcaacaac ggagacgact gtgtcatcat cactgataga gccaatgaga 2160 agctctttga tggcatgtac gaccatttcc tccagtatgg cttcaacatg gtgaccgaaa 2220 aaccagtcta cgaactggaa caattggagt tttgccagtc aaaaccggtc tctgttaatg 2280 gaaagtatag aatggtcaga aggcccgata gcataggcaa agatagcaca acactgctga 2340 gcatgctcaa tcaatccgac gtcaagagct acatgtcggc tgtcgctcag tgtggtttgg 2400 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat agaagctcgg 2460 ggtacaaaaa agtgagtgag gaatttatta aaaacgtcat atcgtatgga acagatgaga 2520 gactacaagg tagacgtacc tataatgaaa cacctatcac aaaccacagt agaatgtcct 2580 actgggaatc attcggagtt gaccctaaga tacagcaaat cgtcgagagg tactacgacg 2640 gtcttacggt aagtgcccaa ctccagagcg tgaaggtgac gactccacat ctgcaatcaa 2700 tactactttc cataccggaa aaccactcac aaaacgaata ttaattacca aatcttagct 2760 gggtttggga tagggttcat agttagtata ccctgtacat tagctctcgc gtactttatt 2820 tataataaag tttcagacac cactagagag gtggtgaatg aattcagtag gccgtagagg 2880 acctagacgc gtaaatcaaa atggcacaag aaggaggcgc cgtagaacag ttcggccagt 2940 ggttgtggtc caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag 3000 aggaggggca aatcctgtat ttagaccaac aggcgggact gaggtattcg tattctcagt 3060 cgacaacctt aaagccaact cttccggggc aatcaaattc ggccccagtc tatcgcaatg 3120 cccagcgctt tcagacggaa tacttaagtc ctaccaccgt tacaagatca caagtatccg 3180 tgttgagttt aagtcacacg cgtccgcaac cacggccggc gctatcttta ttgaactcga 3240 caccgcgtgc aaacaatcag ccctcgctag ctacattaat tccttcacaa tcagcaagac 3300 cgcctcaaag gtcttcagag ccgaagcgat taacgggaag gaattccagg aatcaacgat 3360 agaccagttt tggatgctct acaaggccaa tggaactacc actgagacgg caggacaatt 3420 cattatcacg atgagtgtca gtttgatgac ggccaaatag gtaaactcct caacaccgga 3480 accgaaacct gcaccagaac ccacaccaac cccacagccc acgccagctc cacagcccgc 3540 acccgaaccg actcctgcac cagtccccaa aagattcttt gagtatatcg gcactccaac 3600 cggtacaatc tcaacaagag agaactctga cagtatttct gtcagcaagc tcggtggaca 3660 gtcgatgcag tacatagaga atgagaagtg tgaaacaaag gtcattgact ccttctggag 3720 cactaacaac aacgtgtctg cacaggcagc cttcgtttac ccagtgccag aaggatcata 3780 cagtgtgaac atttcgtgcg aaggctttca atccgttgac cacataggag gcaacgagga 3840 tggctattgg attggtttaa ttgcctactc caattcgtca ggagacaatt ggggggtagg 3900 caactacaaa gggtgtagtt tcaagaactt cttggcaacc aacacttgga gaccaggcca 3960 taaggatctc aagttgaatg attgccagtt cacagatgga caaatagttg agagggatgc 4020 cgtgatgtct ttccacgtgg aagcaacagg tactgatgcc tgtttctatc tcatggctcc 4080 caaaacaatg aaaactgaca aatacaacta tgttgtctca tatggagggt acacaaacaa 4140 acggatggag tttggtacca tatctgtgac atgtgatgaa tccgatgttg aggcagagcg 4200 cataacaagg cacgctgaaa cacccatacg ttccaagcac attcttgtgt ccgaacagta 4260 tgagcaacct ttacccacca taatcgatca aggcttgtgt gatgtgcaaa ctcccgagca 4320 agaacaaaca ctggtggatg aagaagacaa acagactgtt tccacagaac ctgatatagc 4380 actcatggaa tatgaagctg caacagccga aattccggat gctgaagagg atgttttgcc 4440 ctccaaggaa cagctgtctt ctaaaccggt ggacacgtcc ggcaacagaa tacctaagcc 4500 caaggaacct gaagtacttg gaacatacca gggacagaat atttaccctg aagacgtgcc 4560 accaagcgcg cggcaaaagc tacgcgaagc cgcaaatgca ccctccacat tactctacgg 4620 gaaaacttcc aataagagca agaatttctt gactcgtttt gtggaggcga ataggtcccc 4680 tacaactcca gctgccccaa cagtgtcaac tgcatcaaac atgacaaggg agcagcttgc 4740 ggagtacact agaattagga gatcccttgg actcacagca gcgaaggaat acagggcgca 4800 atttcagtga aggcaacacc actagcacaa atcggatcct gggaaacagg cagaactacg 4860 gttcataagc tcgggtaggc tgtcaaccta ccgccgtatc gtattgtgtt tggccgatgg 4920 atgacctcca cgttatcgcc gtttgtattt ttgctctaac tgtgttgaca gggttaggcg 4980 cggcaatcgg ctgttgtgcc ggttgcattc cccctcctcc ctcctcccgc acttctgttt 5040 aagcaaaaat ctctcggtct gtgcgaaaga aactcaaaaa tatcggggag cttcggctca 5100 gtgaggggat taaccacccc cagtaaaggc tggtcttggc ggacttgaat aacccggtat 5160 aagacgaagt ggtaaccgcc cactgatcaa atggtgaaca tgcttctgtg ttatacactg 5220 ccccggagcc taccgggtca acaaggctat tccaccagct caatgaaatg agagtggagt 5280 ggacggagtg ggtgacttcg agatgtacac ccgatcgtca ggattgaaga cgttaaaact 5340 cgacgaccta gtgcaagtcg ttaaactgac tagggtggat acaccacacc cggcctaact 5400 tgtaggcata cccacgatac gaaacgtggg tctcttggag ccactacctg tgatgcaagg 5460 tagggtatga gtcttagcaa gctctgtgcc aggagatgga cataaaccat agcaatcctg 5520 caagtcatct tggcgaacta taggtgaacc gtgccacggg cctgcctacc gaaaggaaaa 5580 gcagtatcca acacagcaat gtgttggggg ttacaccctt cggggtactc tttaacgctg 5640 acactcgaaa gagcagttcg gcaaccc 5667 //